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4.10:

Protein Kinases and Phosphatases

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Molecular Biology
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JoVE Core Molecular Biology
Protein Kinases and Phosphatases

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Phosphorylation and dephosphorylation are chemical modifications where enzymes add or remove a phosphate group from an amino acid residue on a protein substrate. These chemical changes can regulate the function of the target protein through alterations in conformation or activity. Protein kinases are enzymes that phosphorylate proteins and other substrates. Kinases catalyze the reversible addition of a phosphate from ATP to the hydroxyl side chains of serine, threonine, or tyrosine residues.  Eukaryotic protein kinases belong to an extensive family of enzymes with conserved structures and catalytic sequences.  When kinases transfer a phosphate group to the substrate, it forms a hydrogen-bonded network with the surrounding amino acid residues. This network of hydrogen bonds alters the three-dimensional structure of the target protein, modifying its function. Such changes in function can include activating or deactivating the substrate's enzymatic activity or creating a new surface where other molecules can interact with the substrate. Phosphatases catalyze the hydrolysis of the phosphate, using a water molecule to remove a phosphate group as phosphate ion and leaving a free hydroxyl group on the amino acid residue. This disrupts the hydrogen bonding, restoring the original conformation and function. Phosphorylation is a substrate-specific process determined by several elements, including the unique kinase catalytic sequence, local and distal binding with the substrate, and adaptor proteins that mediate distinct kinase-substrate interactions.     Some phosphatases also have high substrate specificity— they remove phosphate from only one or a few selected proteins. Other phosphatases can act on several different protein substrates and are directed to a particular target by the substrate’s regulatory subunits.  Protein kinases and phosphatases work together to toggle a protein between the phosphorylated and dephosphorylated states. These changes play crucial roles in different signaling and metabolic pathways.  When glucose is elevated in the blood, insulin leads to increased protein phosphatase-1 activity. The enzyme dephosphorylates target substrates leading to an organism storing glucose as glycogen.  As blood glucose levels drop, protein kinase A is activated.  Phosphorylation of target proteins by protein kinase A stimulates glycogen breakdown, releasing glucose into the bloodstream.

4.10:

Protein Kinases and Phosphatases

Proteins undergo chemical modifications that trigger changes in the charge, structure, and conformation of the proteins. Phosphorylation, acetylation, glycosylation, nitrosylation, ubiquitination, lipidation, methylation, and proteolysis are various protein modifications that regulate protein activity. Such modifications are usually enzyme-driven.

Protein kinases

Many proteins in the cell are regulated by phosphorylation, the addition of a phosphate group. A family of enzymes called kinases adds phosphate groups to a protein substrate. Kinases phosphorylate their targets by transferring the terminal phosphate group of ATP (or GTP) to its substrate. Protein kinases belong to an extensive family of enzymes that share a catalytic domain of 290 amino acids. Within a protein, phosphorylation can occur on several different amino acids. Based on their target substrates, protein kinases can be classified as histidine kinases, serine-threonine kinases, and tyrosine kinases.

Phosphatases

Phosphatases reverse kinase activity by removing phosphate groups from their substrates through hydrolysis of phosphoric acid monoesters into a phosphate ion, leaving behind a free hydroxyl group.  Protein phosphatases are structurally and functionally diverse and classified into four major groups depending on their catalytic mechanism, inhibitor sensitivity, and substrate preference. These categories include phosphoprotein phosphatases (PPP), phosphotyrosine phosphatases (PTP), Mg2+/Mn2+-dependent protein phosphatases (PPM), and aspartate-based protein phosphatases.

Activity and role of protein kinases and phosphatases

Protein kinases and phosphatases act as molecular switches. Some of these enzymes help maintain cellular homeostasis by sensing an optimum ATP:ADP ratio within cells. A reduced ATP:ADP reflects compromised energy status, triggering protein kinase activity. Protein kinases catalyze the phosphorylation of proteins, stimulating ATP-producing pathways. Conversely, protein phosphatases sense high ATP:ADP levels and catalyze the dephosphorylation of target proteins. Together these enzymes modulate critical pathways and processes in the cell, often in response to external stimuli.

Suggested Reading

  1. Barford, David, Amit K. Das, and Marie-Pierre Egloff. "The structure and mechanism of protein phosphatases: insights into catalysis and regulation." Annual review of biophysics and biomolecular structure 27, no. 1 (1998): 133-164.
  2. Nestler, Eric J., and Paul Greengard. "Protein phosphorylation in the brain." Nature 305, no. 5935 (1983): 583-588.
  3. Ardito, Fatima, Michele Giuliani, Donatella Perrone, Giuseppe Troiano, and Lorenzo Lo Muzio. "The crucial role of protein phosphorylation in cell signaling and its use as targeted therapy." International journal of molecular medicine 40, no. 2 (2017): 271-280.