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16.5:

Polimorfismos de nucleótido único - SNPs (por sus siglas en inglés)

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Molecular Biology
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JoVE Core Molecular Biology
Single Nucleotide Polymorphisms-SNPs

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When multiple human genomes are compared, there are variations observed in the sequences. Variations due to the substitution of one nucleotide are called single nucleotide polymorphisms, or SNPs. Variations due to the insertion or deletion of a sequence of nucleotides less than one kilobase in length are called an indel. If an insertion or deletion of nucleotides is copied a variable number of times in the same genome, it's called a copy number variation or CNV. Often, CNVs involve large stretches of DNA greater than one kilobase in length. A haplotype is a set of genes inherited from a single parent. A genome can be divided into haplotype blocks that contain clusters of polymorphisms. Since few crossovers occur between homologous chromosomes during each meiosis, haplotype blocks have been inherited in a linked group across generations.

16.5:

Polimorfismos de nucleótido único - SNPs (por sus siglas en inglés)

A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast, the substitution of a purine with a pyrimidine (A or G/C or T) or vice versa is called a transversion. In SNPs, transitions are more prominent than transversions. 

Different methods are used to study the genetic variations present in the genome, also known as genotyping. Unlike SNPs, single tandem repeats (STRs) involve di-, tri-, or tetranucleotide repeats. Scientists often use SNPs genotyping over STRs as SNPs are more abundant and stable, and some SNPs directly affect the phenotype.

Most of the time, SNPs are found in introns, which do not code for any protein. Such SNPs can be used as biological markers to locate genes associated with a particular disease. If the SNP is present within a gene or in a regulatory sequence near the gene, it may affect its function and cause disease.

Suggested Reading

  1. Chanock, Stephen. "Candidate genes and single nucleotide polymorphisms (SNPs) in the study of human disease." Disease markers 17, no. 2 (2001): 89-98.https://downloads.hindawi.com/journals/dm/2001/858760.pdf
  2. Gao, Rongsui, Wenhong Zu, Yang Liu, Junhua Li, Zeyao Li, Yanling Wen, Haiyan Wang et al. "Quasispecies of SARS-CoV-2 revealed by single nucleotide polymorphisms (SNPs) analysis." Virulence 12, no. 1 (2021): 1209-1226. https://www.tandfonline.com/doi/full/10.1080/21505594.2021.1911477