Target Prediction Program

A Target Prediction Program is a computational tool that identifies genes, genomic regions, or molecular targets likely to be affected by a biological signal, making it useful for organizing and interpreting genetic data. In genetics research, these programs analyze features such as sequence complementarity, evolutionary conservation, expression patterns, and predicted molecular interactions to rank candidate targets and estimate confidence. Researchers use target prediction to generate testable hypotheses, prioritize genes for functional experiments, and investigate regulatory networks involved in development, disease, and cellular responses. By narrowing large candidate lists, these tools help connect computational analysis with laboratory validation and improve the efficiency of genetic research.

Target Prediction Program - Related Videos

Research

JoVE Journal - Medicine

Protein Target Prediction and Validation of Small Molecule Compound

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2024

The experiment used here shows a method of molecular docking combined with cellular thermal shift assay to predict and validate the interaction between small molecules and protein targets.

Programmed Electrical Stimulation in Mice

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Cited by 48 •

2010

Programmed electrical stimulation provides the ability to determine conduction properties of the heart, and the possibility to induce and terminate cardiac arrhythmias using various pacing protocols. Using a transvenous catheter, intracardiac electrogram recordings can be obtained in mice following programmed electrical stimulation protocols to identify arrhythmogenic substrates.

RNA Secondary Structure Prediction Using High-throughput SHAPE

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Cited by 16 •

2013

High-throughput selective 2' hydroxyl acylation analyzed by primer extension (SHAPE) utilizes a novel chemical probing technology, reverse transcription, capillary electrophoresis and secondary structure prediction software to determine the structures of RNAs from several hundred to several thousand nucleotides at single nucleotide resolution.

Research

JoVE Journal - Biology
Free Sample

A Protocol for Computer-Based Protein Structure and Function Prediction

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Cited by 79 •

2011

Guidelines for computer based structural and functional characterization of protein using the I-TASSER pipeline is described. Starting from query protein sequence, 3D models are generated using multiple threading alignments and iterative structural assembly simulations. Functional inferences are thereafter drawn based on matches to proteins with known structure and functions.

Education

JoVE Core - Chemistry

Predicting Molecular Geometry

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2020

VSEPR Theory for Determination of Electron Pair Geometries The following procedure uses VSEPR theory to determine the electron pair geometries and the molecular structures: Write the Lewis structure of the molecule or polyatomic ion. Count the number of electron groups (lone pairs and bonds) around the central atom. A single, double, or triple bond counts as one region of electron density. Identify the electron-pair geometry based on the number of electron groups: linear, trigonal planar,...

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