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Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
JoVE Journal
Biochemistry
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JoVE Journal Biochemistry
Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web

DOI:
10.3791/55640-v

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09:51 min

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July 16, 2017

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, , ,
1Department of Computational Medicine and Bioinformatics,University of Michigan Medical School, 2Department of Biomedicine,University of Bergen

Chapters

  • 00:05Title
  • 00:40Structure Search and Selection (SEARCH)
  • 01:46Multiple Sequence Alignment Analysis (ALIGN)
  • 02:51Structure Fitting and Analysis (FIT)
  • 03:52Principle Component Analysis (PCA)
  • 05:24Ensemble Normal Mode Analysis (eNMA)
  • 06:52Results: Bio3D-web Analysis of Adenylate Kinase
  • 08:01Conclusion

Summary

Automatic Translation

Automatic Translation

A protocol for the online investigation of protein sequence-structure-dynamics relationships using Bio3D-web is presented.

Tags

Protein Sequence-structure-dynamicsBio3D-webProtein AnalysisInteractive AnalysisSequence AlignmentStructure SuperimpositionResidue Conservation

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