check_url/65779?article_type=b

In Vivo RNA: RNA Interactions Using the SCRAP Bioinformatics Pipeline

December 01, 2023
check_url/65779?article_type=b

A Computational Pipeline for Analyzing Chimeric Noncoding RNA-Target RNA Interactions in High-Throughput Sequencing Data (Video) | JoVE

01:38 min
•
check_url/65779?article_type=b

Installing and Running SCRAP for Small Noncoding RNA-mRNA Interaction Analysis (Video) | JoVE

03:47 min
•
check_url/65779?article_type=b

Peak Calling and Annotation in SCRAP for Small Noncoding RNA: Target RNA Interaction Studies (Video) | JoVE

02:13 min
•
, , ,
1Department of Biological Chemistry,Johns Hopkins University School of Medicine, 2Solomon H. Snyder Department of Neuroscience,Johns Hopkins University School of Medicine

Summary

Automatic Translation

Here, we present a protocol demonstrating the installation and use of a bioinformatics pipeline to analyze chimeric RNA sequencing data used in the study of in vivo RNA:RNA interactions.

Article