JoVE
JoVE
Faculty Resource Center
Research
Behavior
Biochemistry
Biology
Bioengineering
Cancer Research
Chemistry
Developmental Biology
Engineering
Environment
Genetics
Immunology and Infection
Medicine
Neuroscience
JoVE Journal
JoVE Encyclopedia of Experiments
Education
Biology
Chemistry
Clinical
Engineering
Environmental Sciences
Pharmacology
Physics
Psychology
Statistics
JoVE Core
JoVE Science Education
JoVE Lab Manual
JoVE Quiz
JoVE Business
Videos Mapped to your Course
Authors
Librarians
High Schools
About
Sign-In
Sign In
Contact Us
Research
JoVE Journal
JoVE Encyclopedia of Experiments
Education
JoVE Core
JoVE Science Education
JoVE Lab Manual
High Schools
EN
EN - English
CN - 中文
DE - Deutsch
ES - Español
KR - 한국어
IT - Italiano
FR - Français
PT - Português
EN
EN - English
CN - 中文
DE - Deutsch
ES - Español
KR - 한국어
IT - Italiano
FR - Français
PT - Português
Close
Research
Behavior
Biochemistry
Bioengineering
Biology
Cancer Research
Chemistry
Developmental Biology
Engineering
Environment
Genetics
Immunology and Infection
Medicine
Neuroscience
Products
JoVE Journal
JoVE Encyclopedia of Experiments
Education
Biology
Chemistry
Clinical
Engineering
Environmental Sciences
Pharmacology
Physics
Psychology
Statistics
Products
JoVE Core
JoVE Science Education
JoVE Lab Manual
JoVE Quiz
JoVE Business
Videos Mapped to Your Course
Teacher Resources
Get in Touch
Instant Trial
Log In
EN
EN - English
CN - 中文
DE - Deutsch
ES - Español
KR - 한국어
IT - Italiano
FR - Français
PT - Português
Journal
/
Biology
/
In Vivo RNA: RNA Interactions Using the SCRAP Bioinformatics Pipeline
/
Installing and Running SCRAP for Small Noncoding RNA-mRNA Interaction Analysis (Video) | JoVE
JoVE Journal
Biology
A subscription to JoVE is required to view this content.
Sign in or start your free trial.
JoVE Journal
Biology
Installing and Running SCRAP for Small Noncoding RNA-mRNA Interaction Analysis
Installing and Running SCRAP for Small Noncoding RNA-mRNA Interaction Analysis (Video) | JoVE
In Vivo RNA: RNA Interactions Using the SCRAP Bioinformatics Pipeline
DOI:
10.3791/200889-v
•
03:47 min
•
December 01, 2023
•
Sreenivas Eadara
,
Xinbei Li
,
Emily A. Eiss
,
Mollie K. Meffert
2
1
Department of Biological Chemistry
,
Johns Hopkins University School of Medicine
,
2
Solomon H. Snyder Department of Neuroscience
,
Johns Hopkins University School of Medicine
Tags
Keywords: SCRAP
Noncoding RNA-mRNA Interaction Analysis
Miniconda
Git
Home Brew Package Manager
Mamba
Conda Environment
FASTA
Annotation
MiRBase
UCSC Genome Browser
NCBI Genome Data Hub
Adapter File
Paired-end
Single-end
Pre-mRNAs
TRNAs
RNA Cleaning
Reference Directory
MiRBase Abbreviation
Reference Genome
Embed
ADD TO PLAYLIST
Usage Statistics
Related Videos
check_url/200889?article_type=v
A Computational Pipeline for Analyzing Chimeric Noncoding RNA-Target RNA Interactions in High-Throughput Sequencing Data (Video) | JoVE
check_url/200889?article_type=v
Installing and Running SCRAP for Small Noncoding RNA-mRNA Interaction Analysis (Video) | JoVE
check_url/200889?article_type=v
Peak Calling and Annotation in SCRAP for Small Noncoding RNA: Target RNA Interaction Studies (Video) | JoVE
Read Article
