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Kernisolatie van vers bevroren hersentumoren voor single-nucleus RNA-seq en ATAC-seq

Article DOI: 10.3791/61542-v • 06:22 min • August 25th, 2020
August 25th, 2020 •
1, 2, 1, 1,3, 4, 2, 1
1Neurology Clinic and National Center for Tumor Diseases, University Hospital Heidelberg, 2Bioinformatics and Omics Data Analytics, German Cancer Research Center (DKFZ), 3Clinical Cooperation Unit Neurooncology, German Cancer Research Center (DKFZ), 4Division of Experimental Neurosurgery, Department of Neurosurgery, University of Heidelberg, INF 400, Heidelberg, Germany

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Intratumorale heterogeniteit is een inherent kenmerk van tumoren, waaronder gliomen. We ontwikkelden een eenvoudig en efficiënt protocol dat een combinatie van buffers en gradiëntcentrifugatie gebruikt om enkele kernen te isoleren uit vers bevroren glioomweefsels voor single nucleus RNA en ATAC-sequencingstudies.

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Kankeronderzoek Kernisolatie snRNA-seq snATAC-seq 10x Genomics Glioma
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