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10.13:

Master Transcription Regulators

JoVE Core
Molecular Biology
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JoVE Core Molecular Biology
Master Transcription Regulators

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Many complex cellular processes are controlled by a few key transcription factors, known as master transcription regulators. These master regulators promote or inhibit the transcription of groups of genes, such as those required for cell differentiation.  These important proteins can function either directly or indirectly to regulate gene expression. Master transcription regulators can bind directly to cis-regulatory sequences to control the transcription of multiple genes involved in related cellular responses.  MyoD is a master transcriptional regulator required for muscle cell differentiation. It binds to cis-regulatory sequences of hundreds of genes involved in muscle development, including the myosin heavy chain, a motor protein found in muscle, and desmin, a muscle-specific intermediate filament. Master transcription regulators can also act indirectly by binding to cis-regulatory sequences that control the production of other transcription factors.  MyoD binds to regulatory sequences that induce the expression of other transcription factors, such as myocyte-specific enhancer factor 2, that regulates additional genes needed for the development and repair of muscle tissue. Master regulators often work together to promote cell differentiation. The master regulators Oct4 and Sox2 work together to regulate the expression of Zfp206. This transcription factor must be highly expressed in the embryonic stem cells of mice and humans to trigger cell differentiation.  Similarly, together, PPARγ and C/EBPα trigger adipocyte, or fat cell development by binding to cis-regulatory sites for adipocyte-specific proteins. Additionally, PPARγ and C/EBPα each bind to a transcription regulatory site for the other creating a positive feedback loop to increase transcription during differentiation further. 

10.13:

Master Transcription Regulators

Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a  complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory sequences of additional transcriptional regulators and induce their production. The expression of a particular phenotype in an organism is often under the control of one or two master transcription regulators. The significance of these regulators in the functioning of organisms and the expression of diseased phenotypes make them ideal targets for drug development research.

MEF2C is a master transcriptional regulator that is predominantly responsible for the development of breast cancer. It belongs to the Mef2 family of transcription activators responsible for cell differentiation and development. There are several characteristic features of MEF2C that demonstrate its function as a master transcription regulator.  It consists of two DNA binding domains – Mef2 and MADS-box. The Mef2 domain is known for its high-affinity DNA binding and dimerization function. MEF2C also has binding sites for TEAD1, a co-regulator that is responsible for enhancing transcription; MAPK7, a transcription factor that regulates cell proliferation and differentiation; EP300, a transcription factor involved in regulation of cell growth and division; and several histone deacetylases, such as HDAC4, HDAC7, and HDAC9.

Experimental analysis has shown that MEF2C can directly regulate many genes responsible for the oncogenic phenotype.  It can also indirectly regulate the phenotype by activating other transcription factors: 1896 genes and 2156 regulatory interactions at the second-order and 5852 genes and 18801 interactions at the third-order.

Suggested Reading

  1. Hernández-Lemus, E., Baca-López, K., & Tovar, H. (2015). What makes a transcriptional master regulator? A systems biology approach. Frontiers in Pharmacology, 9, 697.
  2. Chan, S. S., & Kyba, M. (2013). What is a Master Regulator?. Journal of stem cell research & therapy, 3, 114.
  3. Hernández-Lemus, E., Baca-López, K., Lemus, R., & García-Herrera, R. (2015). The role of master regulators in gene regulatory networks. arXiv preprint arXiv:1511.09367.