Micro-computed Tomography

Micro-computed tomography (micro-CT) is a non-destructive three-dimensional imaging technique that reveals the internal structure of small biological specimens at micrometer-scale resolution. During scanning, a sample rotates through an X-ray beam while detectors measure changes in attenuation; computational reconstruction then converts these projections into cross-sectional images and a volumetric dataset. In biology, micro-CT supports quantitative analysis of bones, teeth, organs, embryos, and preserved tissues without sectioning, allowing researchers to assess morphology, density, porosity, and spatial relationships. Its ability to capture fine anatomical detail makes it valuable for developmental studies, comparative biology, biomechanics, and monitoring structural changes in disease or treatment models.

Micro-computed Tomography - Related Videos

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JoVE EoE - Neuroimaging

Visualization of a Cerebral Thrombus in a Mouse Using Micro-Computed Tomography Imaging

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2025

Source: Kim, D., et. al. Combined Near-infrared Fluorescent Imaging and Micro-computed Tomography for Directly Visualizing Cerebral Thromboemboli. J. Vis. Exp. (2016)This video demonstrates visualization of cerebral thrombus in mice using micro-computed tomography (micro-CT) imaging. A cerebral thrombus mouse model is injected with fibrin-targeted gold nanoparticles acting as a contrasting agent. The mouse is placed on the bed of a micro-CT machine, and images are acquired from multiple angles.

Combined Near-infrared Fluorescent Imaging and Micro-computed Tomography for Directly Visualizing Cerebral Thromboemboli

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Cited by 8 •

2016

This protocol describes the application of combined near-infrared fluorescent (NIRF) imaging and micro-computed tomography (microCT) for visualizing cerebral thromboemboli. This technique allows the quantification of thrombus burden and evolution. The NIRF imaging technique visualizes fluorescently labeled thrombus in excised brain, while the microCT technique visualizes thrombus inside living animals using gold-nanoparticles.

Osmotic Drug Delivery to Ischemic Hindlimbs and Perfusion of Vasculature with Microfil for Micro-Computed Tomography Imaging

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Cited by 9 •

2013

We show here the in vivo insertion of an osmotic pump for constant local drug delivery and the creation of hindlimb ischemia in a mouse model. Moreover, the hindlimb vasculature is perfused with Microfil, a silicone radiopaque agent, to prepare for micro-computed tomography (micro-CT) imaging.

Assessment of Bone Fracture Healing Using Micro-Computed Tomography

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Cited by 8 •

2022

Micro-computed tomography (µCT) is a non-destructive imaging tool that is instrumental in assessing bone structure in preclinical studies, however there is a lack of consensus on µCT procedures for analyzing the bone healing callus. This study provides a step-by-step µCT protocol that allows the monitoring of fracture healing.

Retrograde Perfusion and Filling of Mouse Coronary Vasculature as Preparation for Micro Computed Tomography Imaging

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Cited by 25 •

2012

Visualization of the coronary vessels is critical to advancing our understanding of cardiovascular diseases. Here we describe a method for perfusing murine coronary vasculature with a radiopaque silicone rubber (Microfil), in preparation for micro-Computed Tomography (μCT) imaging.

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