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Biology
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In Vivo RNA: RNA Interactions Using the SCRAP Bioinformatics Pipeline
/
低分子ノンコーディングRNAのSCRAPにおけるピークコールとアノテーション:ターゲットRNA相互作用研究
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JoVE Journal
Biology
Peak Calling and Annotation in SCRAP for Small Noncoding RNA: Target RNA Interaction Studies
Please note that all translations are automatically generated.
Click here for the English version.
低分子ノンコーディングRNAのSCRAPにおけるピークコールとアノテーション:ターゲットRNA相互作用研究
In Vivo RNA: RNA Interactions Using the SCRAP Bioinformatics Pipeline
DOI:
10.3791/200890-v
•
02:13 min
•
December 01, 2023
•
Sreenivas Eadara
,
Xinbei Li
,
Emily A. Eiss
,
Mollie K. Meffert
2
1
Department of Biological Chemistry
,
Johns Hopkins University School of Medicine
,
2
Solomon H. Snyder Department of Neuroscience
,
Johns Hopkins University School of Medicine
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Peak_calling_directory=/path/to/sample/folders Adapter_file=/path/to/adapter.fasta Min_reads=10 Min_samples=2 Require_same_family=True Reference_dir=/path/to/reference/directory Mirbase_abbr=hsa Genome_abbr=hg38 Peak_file=/path/to/resulting/peaks.bed Bam_file=/path/to/merged.bam Sorted_bam=/path/to/sorted.bam Indexed_bam=/path/to/sorted.bam.bai
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