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JoVE Journal
Biochemistry
Understanding the Changes in Mitochondrial Morphology through Dynamic and Three-dimensional Fluor...
Understanding the Changes in Mitochondrial Morphology through Dynamic and Three-dimensional Fluor...
JoVE Journal
Biochemistry
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JoVE Journal Biochemistry
Understanding the Changes in Mitochondrial Morphology through Dynamic and Three-dimensional Fluorescence Micrographs

Understanding the Changes in Mitochondrial Morphology through Dynamic and Three-dimensional Fluorescence Micrographs

Full Text
1,095 Views
08:15 min
August 15, 2025

DOI: 10.3791/68478-v

Sholto de Wet1,2, Rensu Theart3, Ben Loos1, G. Angus McQuibban2

1Department of Physiology,Stellenbosch University, 2Department of Biochemistry,University of Toronto, 3Department of Electrical and Electronic Engineering,Stellenbosch University

Here we describe the mitochondrial event localizer (MEL), an ImageJ plugin useful in the quantification of the 3-dimensional changes in mitochondrial fission and fusion activity over time. We also describe an image processing pipeline useful for the cleanup of micrographs prior to analysis in ImageJ.

The aim of our research is to observe changes in mitochondrial networks and investigate how these mitochondrial networks change in response to cellular conditions. We use open source tools like Fiji and Python, combining existing libraries with custom macros and scripts to automate the mitochondrial morphology analysis from complex fluorescence microscopy data. Achieving reliable quantitative data and metrics that describe the dynamics of mitochondrial fission and fusion with their localization in 3D remains a challenge.

Standardization for such data generation is not commonly available. Therefore, limited knowledge exists on cell specific fission and fusion frequency and intracellular localization. We added life detection of mitochondrial fission and fusion to the available research metrics.

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