Dmitry M. Kolpashchikov

Publications

• DNA Nanostructures As Catalysts: Double Crossover Tile-Assisted 5' to 5' and 3' to 3' Chemical Ligation of Oligonucleotides
  Bioconjugate Chemistry. Jan, 2024  |   Pubmed ID: 38135674
• Cleaving Folded RNA with DNAzyme Agents
  Chembiochem : a European Journal of Chemical Biology. Jan, 2024  |   Pubmed ID: 37870555
• DNAzyme Nanomachine with Fluorogenic Substrate Delivery Function: Advancing Sensitivity in Nucleic Acid Detection
  Analytical Chemistry. Dec, 2023  |   Pubmed ID: 38079240
• Detection of Multiplex NASBA RNA Products Using Colorimetric Split G Quadruplex Probes
  Methods in Molecular Biology (Clifton, N.J.). 2023  |   Pubmed ID: 37572289
• Visual Detection of Stem-Loop Primer Amplification (SPA) Products Without Denaturation Using Peroxidase-like DNA Machines (PxDM)
  International Journal of Molecular Sciences. Apr, 2023  |   Pubmed ID: 37175522
• DNA Nanomachine (DNM) Biplex Assay for Differentiating Species
  International Journal of Molecular Sciences. Feb, 2023  |   Pubmed ID: 36901903
• OWL2: a Molecular Beacon-based Nanostructure for Highly Selective Detection of Single-nucleotide Variations in Folded Nucleic Acids
  Nanoscale. Mar, 2023  |   Pubmed ID: 36880268
• A Self-assembling Split Aptamer Multiplex Assay for SARS-COVID19 and Miniaturization of a Malachite Green DNA-based Aptamer
  Sensors and Actuators Reports. Nov, 2022  |   Pubmed ID: 36373144
• Specificity of Oligonucleotide Gene Therapy (OGT) Agents
  Theranostics. 2022  |   Pubmed ID: 36276652
• Toward a Home Test for COVID-19 Diagnosis: DNA Machine for Amplification-Free SARS-CoV-2 Detection in Clinical Samples
  ChemMedChem. Oct, 2022  |   Pubmed ID: 36031581
• Binary Antisense Oligonucleotide Agent for Cancer Marker-Dependent Degradation of Targeted RNA
  Nucleic Acid Therapeutics. Oct, 2022  |   Pubmed ID: 35852843
• DNA Nanomachine for Visual Detection of Structured RNA and Double Stranded DNA
  Chemical Communications (Cambridge, England). Apr, 2022  |   Pubmed ID: 35415727
• Split Light Up Aptamers As a Probing Tool for Nucleic Acids
  Methods (San Diego, Calif.). Jan, 2022  |   Pubmed ID: 33992774
• RNA-Cleaving DNA Thresholder Controlled by Concentrations of MiRNA Cancer Marker
  Chembiochem : a European Journal of Chemical Biology. May, 2021  |   Pubmed ID: 33433948
• Manufacturing Reusable NAND Logic Gates and Their Initial Circuits for DNA Nanoprocessors
  Chemistry (Weinheim an Der Bergstrasse, Germany). Feb, 2021  |   Pubmed ID: 33002244
• Binary (Split) Light-up Aptameric Sensors
  Angewandte Chemie (International Ed. in English). Mar, 2021  |   Pubmed ID: 32208549
• Cut and Paste for Cancer Treatment: A DNA Nanodevice That Cuts Out an RNA Marker Sequence to Activate a Therapeutic Function
  Angewandte Chemie (International Ed. in English). Nov, 2020  |   Pubmed ID: 32687686
• Click Chemistry-Based Two-Component System for Efficient Inhibition of Human Immunodeficiency Virus (HIV) Reverse Transcriptase (RT)
  ACS Omega. Mar, 2020  |   Pubmed ID: 32149246
• Bifunctional RNA-Targeting Deoxyribozyme Nanodevice As a Potential Theranostic Agent
  Chemistry (Weinheim an Der Bergstrasse, Germany). Mar, 2020  |   Pubmed ID: 31943434
• Deoxyribozyme-Based DNA Machines for Cancer Therapy
  Chembiochem : a European Journal of Chemical Biology. Mar, 2020  |   Pubmed ID: 31553102
• Evolution of Hybridization Probes to DNA Machines and Robots
  Accounts of Chemical Research. Jul, 2019  |   Pubmed ID: 31243970
• Towards DNA Nanomachines for Cancer Treatment: Achieving Selective and Efficient Cleavage of Folded RNA
  Angewandte Chemie (International Ed. in English). Mar, 2019  |   Pubmed ID: 30693619
• Split Dapoxyl Aptamer for Sequence-Selective Analysis of Nucleic Acid Sequence Based Amplification Amplicons
  Analytical Chemistry. Feb, 2019  |   Pubmed ID: 30680988
• A DNA Minimachine for Selective and Sensitive Detection of DNA
  The Analyst. Jan, 2019  |   Pubmed ID: 30600819
• Towards Sustainable Diagnostics: Replacing Unstable HO by Photoactive TiO in Testing Systems for Visible and Tangible Diagnostics for Use by Blind People
  RSC Advances. Nov, 2018  |   Pubmed ID: 35558580
• The Owl Sensor: a 'fragile' DNA Nanostructure for the Analysis of Single Nucleotide Variations
  Nanoscale. May, 2018  |   Pubmed ID: 29781024
• FaptaSyme: A Strategy for Converting a Monomer/Oligomer-Nonselective Aptameric Sensor into an Oligomer-Selective One
  Chembiochem : a European Journal of Chemical Biology. Apr, 2018  |   Pubmed ID: 29700982
• A Universal and Label-free Impedimetric Biosensing Platform for Discrimination of Single Nucleotide Substitutions in Long Nucleic Acid Strands
  Biosensors & Bioelectronics. Jun, 2018  |   Pubmed ID: 29524915
• Nanoreactors Based on DNAzyme-functionalized Magnetic Nanoparticles Activated by Magnetic Field
  Nanoscale. Jan, 2018  |   Pubmed ID: 29297526
• DNA Computing Systems Activated by Electrochemically-triggered DNA Release from a Polymer-brush-modified Electrode Array
  Electroanalysis. Feb, 2017  |   Pubmed ID: 29379265
• Divide and Control: Comparison of Split and Switch Hybridization Sensors
  ChemistrySelect. Jul, 2017  |   Pubmed ID: 29372178
• A Single Electrochemical Probe Used for Analysis of Multiple Nucleic Acid Sequences
  Electroanalysis. Mar, 2017  |   Pubmed ID: 29371782
• Liquid-to-gel Transition for Visual and Tactile Detection of Biological Analytes
  Chemical Communications (Cambridge, England). Nov, 2017  |   Pubmed ID: 29082399
• A Mutation-resistant Deoxyribozyme OR Gate for Highly Selective Detection of Viral Nucleic Acids
  Chemical Communications (Cambridge, England). Sep, 2017  |   Pubmed ID: 28900642
• Magnetic Field-Activated Sensing of MRNA in Living Cells
  Journal of the American Chemical Society. Sep, 2017  |   Pubmed ID: 28817270
• A Universal Split Spinach Aptamer (USSA) for Nucleic Acid Analysis and DNA Computation
  Chemical Communications (Cambridge, England). May, 2017  |   Pubmed ID: 28425510
• Multiplex Detection of Extensively Drug Resistant Tuberculosis Using Binary Deoxyribozyme Sensors
  Biosensors & Bioelectronics. Aug, 2017  |   Pubmed ID: 28284077
• Self-Assembling Molecular Logic Gates Based on DNA Crossover Tiles
  Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. Jul, 2017  |   Pubmed ID: 28234410
• DNA Nanotechnology for Nucleic Acid Analysis: Multifunctional Molecular DNA Machine for RNA Detection
  Chemical Communications (Cambridge, England). Dec, 2016  |   Pubmed ID: 27886299
• Nonequilibrium Hybridization Enables Discrimination of a Point Mutation Within 5-40 °C
  Journal of the American Chemical Society. Oct, 2016  |   Pubmed ID: 27681667
• DNA Antenna Tile-Associated Deoxyribozyme Sensor with Improved Sensitivity
  Chembiochem : a European Journal of Chemical Biology. Nov, 2016  |   Pubmed ID: 27620365
• Towards a DNA Nanoprocessor: Reusable Tile-Integrated DNA Circuits
  Angewandte Chemie (International Ed. in English). Aug, 2016  |   Pubmed ID: 27430161
• Split Spinach Aptamer for Highly Selective Recognition of DNA and RNA at Ambient Temperatures
  Chembiochem : a European Journal of Chemical Biology. Sep, 2016  |   Pubmed ID: 27305425
• Bioelectronic Interface Connecting Reversible Logic Gates Based on Enzyme and DNA Reactions
  Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. Jul, 2016  |   Pubmed ID: 27145731
• Expedited Quantification of Mutant Ribosomal RNA by Binary Deoxyribozyme (BiDz) Sensors
  RNA (New York, N.Y.). Oct, 2015  |   Pubmed ID: 26289345
• Bridging the Two Worlds: A Universal Interface Between Enzymatic and DNA Computing Systems
  Angewandte Chemie (International Ed. in English). May, 2015  |   Pubmed ID: 25864379
• Divide and Control: Split Design of Multi-input DNA Logic Gates
  Chemical Communications (Cambridge, England). Jan, 2015  |   Pubmed ID: 25513764
• Nuclease-containing Media for Resettable Operation of DNA Logic Gates
  Chemical Communications (Cambridge, England). Jan, 2015  |   Pubmed ID: 25493931
• Enzyme-assisted Target Recycling (EATR) for Nucleic Acid Detection
  Chemical Society Reviews. Sep, 2014  |   Pubmed ID: 24901032
• A Differential Fluorescent Receptor for Nucleic Acid Analysis
  Chembiochem : a European Journal of Chemical Biology. Jan, 2014  |   Pubmed ID: 24339354
• Deoxyribozyme Cascade for Visual Detection of Bacterial RNA
  Chembiochem : a European Journal of Chemical Biology. Nov, 2013  |   Pubmed ID: 24106198
• Folding of 16S RRNA in a Signal-producing Structure for the Detection of Bacteria
  Angewandte Chemie (International Ed. in English). Sep, 2013  |   Pubmed ID: 24038733
• SNP Analysis Using a Molecular Beacon-based Operating Cooperatively (OC) Sensor
  Methods in Molecular Biology (Clifton, N.J.). 2013  |   Pubmed ID: 24026687
• Detection of SNP-containing Human DNA Sequences Using a Split Sensor with a Universal Molecular Beacon Reporter
  Methods in Molecular Biology (Clifton, N.J.). 2013  |   Pubmed ID: 24026686
• Operating Cooperatively (OC) Sensor for Highly Specific Recognition of Nucleic Acids
  PloS One. 2013  |   Pubmed ID: 23441157
• Two-component Covalent Inhibitor
  Bioorganic & Medicinal Chemistry. Apr, 2013  |   Pubmed ID: 23411398
• Detection of Bacterial 16S RRNA Using a Molecular Beacon-based X Sensor
  Biosensors & Bioelectronics. Mar, 2013  |   Pubmed ID: 23021850
• An Elegant Biosensor Molecular Beacon Probe: Challenges and Recent Solutions
  Scientifica. 2012  |   Pubmed ID: 24278758
• Molecular Logic Gates for DNA Analysis: Detection of Rifampin Resistance in M. Tuberculosis DNA
  Angewandte Chemie (International Ed. in English). Sep, 2012  |   Pubmed ID: 22888076
• Connectable DNA Logic Gates: OR and XOR Logics
  Chemistry, an Asian Journal. Mar, 2012  |   Pubmed ID: 22213731
• DNA Nanotechnology for Nucleic Acid Analysis: DX Motif-based Sensor
  Chembiochem : a European Journal of Chemical Biology. Nov, 2011  |   Pubmed ID: 22006680
• Molecular-beacon-based Tricomponent Probe for SNP Analysis in Folded Nucleic Acids
  Chemistry (Weinheim an Der Bergstrasse, Germany). Nov, 2011  |   Pubmed ID: 21956816
• Enzyme-assisted Binary Probe for Sensitive Detection of RNA and DNA
  Chemical Communications (Cambridge, England). Dec, 2010  |   Pubmed ID: 20967321
• Real-time SNP Analysis in Secondary-structure-folded Nucleic Acids
  Angewandte Chemie (International Ed. in English). Nov, 2010  |   Pubmed ID: 20963740
• A Single Molecular Beacon Probe is Sufficient for the Analysis of Multiple Nucleic Acid Sequences
  Chembiochem : a European Journal of Chemical Biology. Aug, 2010  |   Pubmed ID: 20665615
• Binary Probes for Nucleic Acid Analysis
  Chemical Reviews. Aug, 2010  |   Pubmed ID: 20583806
• Molecular Logic Gates Connected Through DNA Four-way Junctions
  Angewandte Chemie (International Ed. in English). Jun, 2010  |   Pubmed ID: 20458718
• RNA-cleaving Deoxyribozyme Sensor for Nucleic Acid Analysis: the Limit of Detection
  Chembiochem : a European Journal of Chemical Biology. Apr, 2010  |   Pubmed ID: 20301161
• Nucleic Acid Detection Using MNAzymes
  Chemistry & Biology. Feb, 2010  |   Pubmed ID: 20189100
• Triple-stem DNA Probe: a New Conformationally Constrained Probe for SNP Typing
  Chembiochem : a European Journal of Chemical Biology. Jun, 2009  |   Pubmed ID: 19444831