Shundi Shi Department of Chemical Engineering Columbia University Biography Publications Institution JoVE Articles Shundi Shi has not added a biography. If you are Shundi Shi and would like to personalize this page please email our Author Liaison for assistance. Publications Direct Sequencing of TRNA by 2D-HELS-AA MS Seq Reveals Its Different Isoforms and Dynamic Base Modifications ACS Chemical Biology. Jun, 2020 | Pubmed ID: 32364699 A General LC-MS-based RNA Sequencing Method for Direct Analysis of Multiple-base Modifications in RNA Mixtures Nucleic Acids Research. 11, 2019 | Pubmed ID: 31504795 Design and Characterization of a Nanopore-coupled Polymerase for Single-molecule DNA Sequencing by Synthesis on an Electrode Array Proceedings of the National Academy of Sciences of the United States of America. 11, 2016 | Pubmed ID: 27729524 Real-time Single-molecule Electronic DNA Sequencing by Synthesis Using Polymer-tagged Nucleotides on a Nanopore Array Proceedings of the National Academy of Sciences of the United States of America. May, 2016 | Pubmed ID: 27091962 DNA Sequencing by Synthesis Using 3'-azidomethyl Nucleotide Reversible Terminators and Surface-enhanced Raman Spectroscopic Detection RSC Advances. Jan, 2014 | Pubmed ID: 25396047 Mitochondrial Single Nucleotide Polymorphism Genotyping by Matrix-assisted Laser Desorption/ionization Time-of-flight Mass Spectrometry Using Cleavable Biotinylated Dideoxynucleotides Analytical Biochemistry. Aug, 2012 | Pubmed ID: 22579594 Design and Synthesis of Cleavable Biotinylated Dideoxynucleotides for DNA Sequencing by Matrix-assisted Laser Desorption/ionization Time-of-flight Mass Spectrometry Analytical Biochemistry. Aug, 2012 | Pubmed ID: 22543091 Four-color DNA Sequencing with 3'-O-modified Nucleotide Reversible Terminators and Chemically Cleavable Fluorescent Dideoxynucleotides Proceedings of the National Academy of Sciences of the United States of America. Jul, 2008 | Pubmed ID: 18591653 3'-O-modified Nucleotides As Reversible Terminators for Pyrosequencing Proceedings of the National Academy of Sciences of the United States of America. Oct, 2007 | Pubmed ID: 17923668 Four-color DNA Sequencing by Synthesis Using Cleavable Fluorescent Nucleotide Reversible Terminators Proceedings of the National Academy of Sciences of the United States of America. Dec, 2006 | Pubmed ID: 17170132 Four-color DNA Sequencing by Synthesis on a Chip Using Photocleavable Fluorescent Nucleotides Proceedings of the National Academy of Sciences of the United States of America. Apr, 2005 | Pubmed ID: 15829588 The Genomic Sequence of the Accidental Pathogen Legionella Pneumophila Science (New York, N.Y.). Sep, 2004 | Pubmed ID: 15448271 Comparative Sequence Analysis of the Icm/dot Genes in Legionella Plasmid. Mar, 2004 | Pubmed ID: 15003709 Multiplex Genotyping of the Human Beta2-adrenergic Receptor Gene Using Solid-phase Capturable Dideoxynucleotides and Mass Spectrometry Analytical Biochemistry. May, 2003 | Pubmed ID: 12711347 2D-HELS MS Seq: A General LC-MS-Based Method for Direct and de novo Sequencing of RNA Mixtures with Different Nucleotide Modifications Ning Zhang1,2, Shundi Shi2, Barney Yoo3, Xiaohong Yuan1, Wenjia Li4, Shenglong Zhang1 1Department of Biological and Chemical Sciences, New York Institute of Technology, 2Department of Chemical Engineering, Columbia University, 3Department of Chemistry, Hunter College, City University of New York, 4Department of Computer Science, New York Institute of Technology JoVE 61281 Genetics
2D-HELS MS Seq: A General LC-MS-Based Method for Direct and de novo Sequencing of RNA Mixtures with Different Nucleotide Modifications Ning Zhang1,2, Shundi Shi2, Barney Yoo3, Xiaohong Yuan1, Wenjia Li4, Shenglong Zhang1 1Department of Biological and Chemical Sciences, New York Institute of Technology, 2Department of Chemical Engineering, Columbia University, 3Department of Chemistry, Hunter College, City University of New York, 4Department of Computer Science, New York Institute of Technology JoVE 61281 Genetics
