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Interactome: Domainome 图书馆建设、噬菌体展示和下一代测序的验证与选择协议
Interactome: Domainome 图书馆建设、噬菌体展示和下一代测序的验证与选择协议
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JoVE Journal Biology
Interactome-Seq: A Protocol for Domainome Library Construction, Validation and Selection by Phage Display and Next Generation Sequencing

Interactome: Domainome 图书馆建设、噬菌体展示和下一代测序的验证与选择协议

Full Text
9,512 Views
12:04 min
October 3, 2018

DOI: 10.3791/56981-v

Maria Felicia Soluri1, Simone Puccio2, Giada Caredda2, Giorgio Grillo3, Vito Flavio Licciulli3, Arianna Consiglio3, Paolo Edomi4, Claudio Santoro1, Daniele Sblattero4, Clelia Peano5,6

1Department of Health Sciences,Università del Piemonte Orientale & IRCAD, Novara, Italy, 2Institute of Biomedical Technologies,National Research Council, Segrate, Milan, Italy, 3Institute of Biomedical Technologies,National Research Council, Bari, Italy, 4Department of Life Sciences,University of Trieste, Italy, 5Institute of Genetic and Biomedical Research,National Research Council, Rozzano, Milan, Italy, 6Humanitas Clinical and Research Center, Rozzano, Milan, Italy

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Please note that some of the translations on this page are AI generated. Click here for the English version.

Overview

This article presents a method for constructing a 'domainome' library from any DNA source, utilizing a combination of phage display, a folding reporter, and next-generation sequencing. This approach enables the characterization and selection of proteins against specific targets, facilitating various protein-based research applications.

Key Study Components

Area of Science

  • Protein research
  • Phage display technology
  • Next-generation sequencing

Background

  • Understanding protein domains and their functions is crucial in biology.
  • Current methods for protein characterization can be biased or limited in scope.
  • High-throughput techniques are needed for comprehensive analysis.
  • Domainome libraries can enhance functional studies of proteins.

Purpose of Study

  • To develop an unbiased method for constructing domainome libraries.
  • To enable the selection of proteins against various targets.
  • To provide a robust analysis framework for protein interactions.

Methods Used

  • Phage display for protein selection.
  • Next-generation sequencing for detailed analysis.
  • Web tools for data characterization and analysis.
  • Integration of multiple technologies for comprehensive research.

Main Results

  • The method allows for high-throughput and unbiased protein characterization.
  • Successful construction of domainome libraries from diverse DNA sources.
  • Enhanced sensitivity in analyzing protein interactions.
  • Web tools provide precise characterization of domainomes and interactomes.

Conclusions

  • This approach significantly advances protein-based research methodologies.
  • It opens new avenues for studying protein interactions and functions.
  • The integration of technologies offers a powerful tool for researchers.

Frequently Asked Questions

What is a domainome library?
A domainome library is a collection of protein domains constructed from DNA sources, allowing for the study of various protein interactions and functions.
How does phage display work?
Phage display is a technique that allows for the selection of proteins by displaying them on the surface of bacteriophages, enabling interaction studies with various targets.
What are the advantages of using next-generation sequencing?
Next-generation sequencing provides high-throughput capabilities and detailed insights into the genetic makeup of proteins, enhancing the analysis of protein interactions.
Can this method be applied to any DNA source?
Yes, the method is designed to be versatile and can be applied to various DNA sources for constructing domainome libraries.
What types of studies can benefit from this approach?
This approach can benefit functional studies, protein interaction network analysis, and characterization of structural properties of proteins.

所描述的协议允许构造、特征和选择 (针对选择的目标) 的 "domainome" 图书馆由任何 DNA 来源。这是通过一个结合不同技术的研究管道实现的: 噬菌体展示, 折叠记者和下一代测序, 以及一个用于数据分析的 web 工具。

该方法有助于回答基于蛋白质的研究中的关键问题,如新蛋白质或蛋白质域的注释、已知蛋白质的结构和功能特性的表征、不同条件下蛋白质相互作用网络的定义或抗原抗体特征。该技术的主要优点是,它是完全不偏不倚的,高吞吐量和模块化的任何类型的研究范围从单个基因到全基因组。域库的构建对于函数研究非常有用。

它可以转移到噬菌体显示环境中,并用于针对不同的靶点(如结合蛋白或纯化抗体)进行选择。与 NGS 的耦合可实现极其敏感和强大的分析。同时,专门开发的 Web 工具对整个域和交互组进行精确描述。

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