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DOI: 10.3791/56981-v
Maria Felicia Soluri1, Simone Puccio2, Giada Caredda2, Giorgio Grillo3, Vito Flavio Licciulli3, Arianna Consiglio3, Paolo Edomi4, Claudio Santoro1, Daniele Sblattero4, Clelia Peano5,6
1Department of Health Sciences,Università del Piemonte Orientale & IRCAD, Novara, Italy, 2Institute of Biomedical Technologies,National Research Council, Segrate, Milan, Italy, 3Institute of Biomedical Technologies,National Research Council, Bari, Italy, 4Department of Life Sciences,University of Trieste, Italy, 5Institute of Genetic and Biomedical Research,National Research Council, Rozzano, Milan, Italy, 6Humanitas Clinical and Research Center, Rozzano, Milan, Italy
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This article presents a method for constructing a 'domainome' library from any DNA source, utilizing a combination of phage display, a folding reporter, and next-generation sequencing. This approach enables the characterization and selection of proteins against specific targets, facilitating various protein-based research applications.
所描述的协议允许构造、特征和选择 (针对选择的目标) 的 "domainome" 图书馆由任何 DNA 来源。这是通过一个结合不同技术的研究管道实现的: 噬菌体展示, 折叠记者和下一代测序, 以及一个用于数据分析的 web 工具。
该方法有助于回答基于蛋白质的研究中的关键问题,如新蛋白质或蛋白质域的注释、已知蛋白质的结构和功能特性的表征、不同条件下蛋白质相互作用网络的定义或抗原抗体特征。该技术的主要优点是,它是完全不偏不倚的,高吞吐量和模块化的任何类型的研究范围从单个基因到全基因组。域库的构建对于函数研究非常有用。
它可以转移到噬菌体显示环境中,并用于针对不同的靶点(如结合蛋白或纯化抗体)进行选择。与 NGS 的耦合可实现极其敏感和强大的分析。同时,专门开发的 Web 工具对整个域和交互组进行精确描述。
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