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JoVE Journal
Cancer Research
Sequencing Small Non-coding RNA from Formalin-fixed Tissues and Serum-derived Exosomes from Castr...
Sequencing Small Non-coding RNA from Formalin-fixed Tissues and Serum-derived Exosomes from Castr...
JoVE Journal
Cancer Research
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JoVE Journal Cancer Research
Sequencing Small Non-coding RNA from Formalin-fixed Tissues and Serum-derived Exosomes from Castration-resistant Prostate Cancer Patients

Sequencing Small Non-coding RNA from Formalin-fixed Tissues and Serum-derived Exosomes from Castration-resistant Prostate Cancer Patients

Full Text
7,232 Views
12:13 min
November 19, 2019

DOI: 10.3791/60549-v

Divya Bhagirath1, Rajvir Dahiya2, Shahana Majid2, Z. Laura Tabatabai3, Sharanjot Saini1

1Department of Biochemistry and Molecular Biology,Augusta University, 2Department of Urology,Veterans Affairs Medical Center and University of California, San Francisco, 3Department of Pathology,Veterans Affairs Medical Center and University of California, San Francisco

Therapy resistance often develops in patients with advanced prostate cancer, and in some cases, cancer progresses to a lethal subtype called neuroendocrine prostate cancer. Assessing the small non-coding RNA-mediated molecular changes that facilitate this transition would allow better disease stratification and identification of causal mechanisms that lead to development of neuroendocrine prostate cancer.

With the use of this protocol researchers can identify novel exome or extracellular vesicle based and tissue based micro cellular for advanced prostate cancer. Isolating RNA from both F-F-B tissues and extracellular vesicles is often challenging as most of it is either de created or is in limited quantity This particle will elaborate on different methods to optimize the R-N-A inputs and C-D-N-A libraries to gene most specific free and high quality data for next generation sequencing. Next gen sequencing offers the most comprehensive platform for understanding molecule alteration in tumor that underlie tumor progression this particle is optimized with prostate cancer clinical sample, and can provide novel insights into the underlying biology of advanced aggressive prostate cancer.

Optimizing the C-D-N-A libraries from low input material is a crucial step for a successful sequencing run it is therefore very important to generate high quality C-D-N-A libraries to get accurate results. After performing micro dissection of tissues as previously done proceed to isolating serum derived E-V's Thaw rows of patient serum samples at four degrees celsius. Transfer 110 micro liters of thawed serum sample to a tube and spin at two thousand times G for thirty minutes.

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