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JoVE Journal
Chemistry
Host Cell Protein Analysis using Enrichment Beads Coupled with Limited Digestion
Host Cell Protein Analysis using Enrichment Beads Coupled with Limited Digestion
JoVE Journal
Chemistry
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JoVE Journal Chemistry
Host Cell Protein Analysis using Enrichment Beads Coupled with Limited Digestion

Host Cell Protein Analysis using Enrichment Beads Coupled with Limited Digestion

Full Text
2,905 Views
09:45 min
January 19, 2024

DOI: 10.3791/65544-v

Sisi Zhang1, Hui Xiao1, Ning Li1

1Analytical Chemistry,Regeneron Pharmaceuticals Inc.

Overview

This article presents a sensitive method for enriching and detecting low-abundance host cell proteins (HCPs) from drug products using proteome enrichment beads. The approach is exemplified with a monoclonal antibody drug substance, providing a reference for evaluating various analytical methods.

Key Study Components

Area of Science

  • Biotechnology
  • Pharmaceutical Analysis
  • Proteomics

Background

  • Host cell proteins (HCPs) can interfere with drug product efficacy and safety.
  • Detecting low-abundance HCPs is crucial for quality control in biopharmaceuticals.
  • Traditional methods often struggle with the dynamic range between antibodies and HCPs.
  • Improving detection limits is essential for accurate HCP analysis.

Purpose of Study

  • To develop a method for enriching and detecting HCPs in drug products.
  • To identify challenges in HCP analysis and propose solutions.
  • To evaluate the performance of the method using a well-characterized monoclonal antibody.

Methods Used

  • Protein enrichment beads for HCP isolation.
  • Liquid chromatography coupled with mass spectrometry (LC-MS).
  • Targeted methods including immunoprecipitation and molecular weight cutoff.
  • Multiple reaction monitoring for enhanced sensitivity.

Main Results

  • The method successfully enriched HCPs from the drug product.
  • Improved detection limits were achieved compared to traditional methods.
  • The approach effectively reduced the dynamic range issues in LC-MS analysis.
  • Demonstrated applicability with a monoclonal antibody reference material.

Conclusions

  • The developed method enhances the detection of low-abundance HCPs.
  • It addresses significant challenges in HCP analysis for biopharmaceuticals.
  • This protocol can serve as a benchmark for future studies in HCP detection.

Frequently Asked Questions

What are host cell proteins?
Host cell proteins (HCPs) are proteins derived from the cells used to produce biopharmaceuticals, which can affect drug safety and efficacy.
Why is detecting HCPs important?
Detecting HCPs is crucial for ensuring the quality and safety of biopharmaceutical products.
What challenges exist in HCP analysis?
The main challenge is the dynamic range between the abundant therapeutic antibodies and the low-abundance HCPs.
How does the new method improve HCP detection?
The method enhances sensitivity and reduces the dynamic range issues by using protein enrichment beads and targeted detection techniques.
What techniques are used in this study?
Techniques include protein enrichment, liquid chromatography, and mass spectrometry.
Can this method be applied to other drug products?
Yes, the method can be adapted for various biopharmaceuticals beyond monoclonal antibodies.

A protocol is presented for enriching host cell proteins (HCPs) from drug products (DP) and detecting peptides using proteome enrichment beads. The method is demonstrated using an in-house manufactured monoclonal antibody (mAb) drug substance (DS), which is a well-characterized reference material for evaluating and comparing different methods in terms of performance.

We have developed a highly sensitive method to detect those low-abundance host cell proteins from the drug product using the protein enrichment beads. This approach help us to find the root cause and the risk associated with the drug product. There are multiple ways to improve the detection limit of HCP analysis.

And targeted methods including, but not limited to Protein A depletion, the limited digestion, the molecular weight cutoff, the immunoprecipitation, the targeted way to detect the host cell protein, including liquid chromatography, multiple reaction monitoring, and the nano liquid chromatography parallel reaction monitoring. The major challenge associated with HCP analysis is the significant dynamic range between antibody drug and host cell proteins. So most the methods aim to reduce amount of antibody and the enriched HCP before LC-MS analysis to decrease the dynamic range between antibody peptides and HCP peptides.

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