Waiting
Login processing...

Trial ends in Request Full Access Tell Your Colleague About Jove

Bioengineering

Reconstitution of the Bacterial Glutamate Receptor Channel by Encapsulation of a Cell-Free Expression System

Published: March 8, 2024 doi: 10.3791/66595
* These authors contributed equally

Summary

This protocol describes the inverted emulsion method used to encapsulate a cell-free expression (CFE) system within a giant unilamellar vesicle (GUV) for the investigation of the synthesis and incorporation of a model membrane protein into the lipid bilayer.

Abstract

Cell-free expression (CFE) systems are powerful tools in synthetic biology that allow biomimicry of cellular functions like biosensing and energy regeneration in synthetic cells. Reconstruction of a wide range of cellular processes, however, requires successful reconstitution of membrane proteins into the membrane of synthetic cells. While the expression of soluble proteins is usually successful in common CFE systems, the reconstitution of membrane proteins in lipid bilayers of synthetic cells has proven to be challenging. Here, a method for reconstitution of a model membrane protein, bacterial glutamate receptor (GluR0), in giant unilamellar vesicles (GUVs) as model synthetic cells based on encapsulation and incubation of the CFE reaction inside synthetic cells is demonstrated. Utilizing this platform, the effect of substituting the N-terminal signal peptide of GluR0 with proteorhodopsin signal peptide on successful cotranslational translocation of GluR0 into membranes of hybrid GUVs is demonstrated. This method provides a robust procedure that will allow cell-free reconstitution of various membrane proteins in synthetic cells.

Introduction

Bottom-up synthetic biology has gained increasing interest over the past decade as an emerging field with numerous potential applications in bioengineering, drug delivery, and regenerative medicine1,2. The development of synthetic cells as a cornerstone of bottom-up synthetic biology, in particular, has attracted a wide range of scientific communities due to the promising applications of synthetic cells as well as their cell-like physical and biochemical properties that facilitate in vitro biophysical studies3,4,5,6. Synthetic cells are often engineered in cell-sized giant unilamellar vesicles (GUVs) in which different biological processes are recreated. Reconstitution of cell cytoskeleton7,8, light-dependent energy regeneration9, cellular communication10,11, and biosensing12 are examples of efforts made to reconstruct cell-like behaviors in synthetic cells.

While some cellular processes rely on soluble proteins, many characteristics of natural cells, such as sensing and communication, often utilize membrane proteins, including ion channels, receptors, and transporters. A major challenge in synthetic cell development is the reconstitution of membrane proteins. Although traditional methods of membrane protein reconstitution in lipid bilayers rely on detergent-mediated purification, such methods are laborious, ineffective for proteins that are toxic to the expression host, or are often not suited for membrane protein reconstitution in GUVs13.

An alternative method for protein expression is cell-free expression (CFE) systems. CFE systems have been a powerful tool in synthetic biology that allows in vitro expression of various proteins using either cell lysate or purified transcription-translation machinery14. CFE systems can also be encapsulated in GUVs, thus allowing compartmentalized protein synthesis reactions that can be programmed for various applications, such as the creation of light-harvesting synthetic cells9 or mechanosensitive biosensors15,16. Analogous to recombinant protein expression methods, membrane protein expression is challenging in CFE systems17. Aggregation, misfolding, and lack of post-translational modification in CFE systems are major bottlenecks that hinder successful membrane protein synthesis using CFE systems. The difficulty of bottom-up membrane protein reconstitution using CFE systems is due in part to the absence of a complex membrane protein biogenesis pathway that relies on signal peptides, signal recognition particles, translocons, and chaperoning molecules. However, recently, multiple studies have suggested that the presence of membranous structures such as microsomes or liposomes during translation promotes successful membrane protein expression18,19,20,21. Additionally, Eaglesfield et al. and Steinküher et al. have found that the inclusion of specific hydrophobic domains known as signal peptides in the N-terminus of the membrane protein can significantly improve its expression22,23. Altogether, these studies suggest that the challenge of membrane protein reconstitution in synthetic cells can be overcome if the protein translation occurs in the presence of the GUV membrane and if proper N-terminal signal peptide is utilized.

Here, a protocol for encapsulation of the protein synthesis using recombinant elements (PURE) CFE reactions for membrane protein reconstitution in GUVs is presented. Bacterial glutamate receptor24 (GluR0) is selected as the model membrane protein, and the effect of its N-terminal signal peptide on its membrane reconstitution is studied. The effect of proteorhodopsin signal peptide, which was shown to improve membrane protein reconstitution efficiency by Eaglesfield et al.22, is investigated by constructing a mutated variant of GluR0 denoted as PRSP-GluR0 and its expression and membrane localization with wild-type GluR0 (referred to as WT-GluR0 hereafter) that harbors its native signal peptide is compared. This protocol is based on the inverted emulsion method25 with modifications that make it robust for CFE encapsulation. In the presented method, the CFE reactions are first emulsified using a lipid-in-oil solution that generates micron-sized droplets that contain the CFE system and are stabilized by the lipid monolayer. The emulsion droplets are then layered on top of an oil-water interface that is saturated with another lipid monolayer. The emulsion droplets are then forced to travel across the oil-water interface via centrifugal force. Through this process, the droplets obtain another monolayer, thus generating a bilayer lipid vesicle. The GUVs containing the CFE reaction are then incubated, during which the membrane protein is expressed and incorporated into the GUV membrane. Although this protocol is specified for cell-free expression of GluR0, it can be used for cell-free synthesis of other membrane proteins or different synthetic cell applications such as cytoskeleton reconstitution or membrane fusion studies26.

Subscription Required. Please recommend JoVE to your librarian.

Protocol

The reagents and equipment utilized for this study are provided in the Table of Materials.

1. Bulk CFE reactions in the presence of small unilamellar vesicles (SUVs)

  1. SUV preparation
    NOTE: This step needs to be performed in a fume hood following the safety instructions for working with chloroform.
    1. Prepare 5 mM 1-palmitoyl-2-oleoyl-glycero-3-phosphocholine (POPC) SUVs in a glass vial by transferring 76 µL of 25 mg/mL POPC stock solution dissolved in chloroform.
    2. While gently rotating the glass vial, blow a gentle stream of argon into the vial to form a film of dried lipids at the bottom. Next, transfer the glass vial to a desiccator with its cap loosely screwed to evaporate excess chloroform.
    3. Keep the glass vial in the desiccator for 1 h. Then, add 0.5 mL ultra-pure deionized water to dissolve the lipid film and vortex for approximately 2 min.
    4. Set up a mini-extrusion apparatus by soaking two filter supports in deionized water and placing them on each of the internal membrane supports. Then, soak a 100 nm polycarbonate filter and place it in between the two internal membrane supports held together by the extruder outer casing and the retainer nut. Place this setup in the extruder stand.
    5. Flush two 1 mL gas-tight syringes 3 times with ultra-pure deionized water.
    6. Load the sample of lipid-water mix into one of the 1 mL gas-tight syringes and place it in one end of the mini extruder using the swing arm clips to hold the syringe in place. Insert the second syringe into the other end of the mini-extruder and make sure it is fully depressed.
      NOTE: When loading the syringe with the lipid-water mix, ensure there is no air in the syringe before passing it through the mini-extruder.
    7. Gently pass the lipid-water mix from the original syringe to the empty syringe through the mini-extruder apparatus. Repeat this step 11 times to form SUVs. Transfer the SUVs to a 1.5 mL microcentrifuge tube.
      NOTE: The SUV solution can be stored at 4 °C for up to 2 weeks.
  2. CFE reaction assembly
    1. Assemble the CFE reaction by following the cell-free expression protocol provided by the manufacturer with slight modifications detailed in the following.
    2. Mix 10 µL of Solution 1 (containing amino acids, NTPs, tRNAs and substrates for enzymes, and necessary buffer), 1 µL of Solution 2 (proteins in 20% glycerol), 2 µL of Solution 3 (ribosome (20 µM)), appropriate amount of the DNA encoding for soluble sfGFP-sfCherry(1-10)27 (referred to as soluble sfGFP hereafter), WT-GluR0-sfGFP, or PRSP-GluR0-sfGFP (10-60 ng/1000 base pairs), 1 µL murine RNAse inhibitor, and 4 µL of 5 mM SUV solution for membrane proteins or 4 µL water for soluble proteins.
    3. Bring the reaction's final volume to 20 µL by adding ultra-pure deionized water.
      NOTE: When assembling the CFE system, all components must be kept on ice. All materials are temperature-sensitive and can degrade if they reach room temperature.
  3. CFE reaction incubation and monitoring
    1. Transfer the CFE solution to a 96-well conical V-bottom plate. To prevent evaporation during the course of the reaction, cover the plate using a sealing film.
    2. Incubate the plate at 37 °C in a plate reader for 4-5 h while monitoring the CFE reaction by measuring the GFP signal with a gain of 100 at 488 nm/528 nm excitation/emission wavelengths every 2 min.

2. CFE reactions encapsulated in GUVs

  1. Preparation of GUV outer buffer solution
    1. In a 1.5 mL microcentrifuge tube, mix 1.5 µL of 1 M spermidine, 37.5 µL of 100 mM ATP, 25 µL of 100 mM GTP, 12.5 µL of 100 mM CTP, 12.5 µL of 100 mM UTP, 25 µL of 1 M creatine phosphate, 18 µL of 1 M magnesium acetate, 93.33 µL of 3 M potassium glutamate, 50 µL of 1 M HEPES KOH (pH 7.4), 1.15 µL of 332 mM folinic acid, 100 µL of 2 M glucose, and 50 µL from stock solution of 6 mM mixture of each of the 20 amino acids (prepared by following the protocol described by Sun et al.28).
    2. Bring the solution's final volume to 1 mL by adding ultra-purified deionized water.
      NOTE: All components must be kept on ice. Add the amino acid mixture at the end to avoid amino acid depletion28. The solution can be aliquoted in 330 µL aliquots and stored at -20 °C until use.
  2. Preparation of the lipid-in-oil mixture
    NOTE: this step needs to be performed in a fume hood following the safety instructions for working with chloroform.
    1. In a fume hood, mix 17.3 µL of 25 mg/mL POPC stock solution and 1.08 µL of 50 mg/mL poly(butadiene)-b-poly(ethylene oxide) (PEO-b-PBD) copolymer in a 15 mL glass vial.
      NOTE: The final lipid-in-oil solution contains 0.5 mM lipid with 95% and 5% POPC and PEO-b-PBD, respectively. PEO-b-PBD was used to enhance membrane stability during protein expression but was kept at a low molar ratio to reduce the copolymer's tendency to aggregate into micelles separate from lipid molecules29,30.
    2. Carefully blow a gentle stream of argon gas into the glass vial while rotating the vial to evaporate the chloroform.
    3. Pipette 1.2 mL of light mineral oil into the 15 mL glass vial containing the dried lipids.
    4. Mix the lipids and oil by vortexing at maximum speed for 10-20 s. The dissolved lipid-copolymer mix will look cloudy.
    5. To ensure that all possible lipid aggregates in the oil are fully dissolved and dispersed throughout the oil, place the glass vial in an oven at around 50 °C for 20 min before vortexing for an additional 10-20 s at maximum speed.
  3. CFE reaction assembly and encapsulation (Figure 1 summarizes the following steps).
    1. Prepare 300 µL of the GUV outer solution in a 1.5 mL microcentrifuge tube by mixing 270 µL of CFE outer buffer solution prepared in step 2.1, 15 µL of 5 M NaCl, and 15 µL of 4.5 M KCl.
      NOTE: At this step, add 0.45 µL of 1 M 1,4-dithiothreitol (DTT) to the GUV outer solution. The purpose of adding NaCl and KCl is to adjust the outer solution's osmolality to match it with the inner CFE solution. The exact volume of NaCl and KCl depends on the desired osmolality adjustment. One can add either NaCl or KCl or both to adjust the osmolality.
    2. Gently pipette 300 µL of lipid-in-oil mixture on top of the GUV outer solution.
      NOTE: When adding the lipid-oil mix, it is important that the oil does not mix with the aqueous outer solution. After the addition, there should be a visible interface between the lipid-in-oil mixture and the GUV outer solution.
    3. Incubate the oil-water interface at room temperature for 2 h to allow the lipid monolayer to form and stabilize at the interface.
    4. Meanwhile, follow section 1.2.1 to assemble a CFE reaction containing the plasmid DNA encoding the membrane protein variants or soluble GFP. Replace the 4 µL of 5 mM SUV solution or water with 4 µL of 1 M sucrose. This reaction will be the GUV inner solution.
      NOTE: An osmometer was used to measure the osmolality of the inner and outer solutions. The osmolality of the outer solution was then adjusted accordingly by the addition of NaCl or water. The osmolality of the CFE reaction is typically around 1600 mOsm/Kg. Adding sucrose to the reaction increases the inner solution density, thus allowing the vesicles to travel across the oil-water interface during the centrifugation step. An alternative to sucrose is the Opti-Prep density gradient solution.
    5. Add 600 µL of lipid-oil mixture to the microcentrifuge tube containing the CFE reaction and pipette up and down vigorously for ~1 min to emulsify the reaction in lipid-in-oil solution and form the lipid monolayer around synthetic cells.
      NOTE: The final solution should not have any bubbles and should look opaque.
    6. Gently pipette the inner solution emulsion on top of the oil layer in the 1.5 mL microcentrifuge tube where the oil-water interface was set up.
      NOTE: Be careful not to disturb or destabilize the interface.
    7. Centrifuge for 10 min at 2,000 x g at 4 °C.
      NOTE: The centrifugation speed was optimized for this protocol. Adir et al.31 reported a different centrifugation speed.
    8. Once the centrifugation is over, carefully remove the excess oil and outer solution from the microcentrifuge tube using a pipettor. Remove the outer solution until the remaining volume is around 100 µL.
      NOTE: A pellet of GUVs is usually visible at the bottom of the microcentrifuge tube. However, a lack of a visible pellet does not necessarily mean no GUV yield. Instead of using a pipettor, the excess oil on top of the outer solution can be removed by aspiration. It is critical to ensure the lipid-in-oil solution is completely removed. Oil contamination in GUV solution can cause low-quality images.
    9. Resuspend the GUV pellet in the remaining 100 µL solution by gently pipetting up and down. Next, transfer the GUV solution to a clean 96 well clear flat bottom plate to incubate.

3. Encapsulated CFE reaction incubation and imaging

  1. Cover the plate using a sealing film to prevent evaporation. Incubate the plate at 37 °C for 5-6 h. One can use a plate reader and follow step 1.3.2 to prepare the plate reader for the incubation step.
  2. Once the incubation is over, place the 96 well plate on the imaging stage of an inverted microscope equipped with an EMCCD camera (or a sCMOS camera), DAQ-MX controlled laser (or an integrated laser combiner system), and a CSU-X1 spinning disk confocal (or a laser scanning confocal). Focus on any ROI containing GUVs and capture images at an excitation wavelength of 488 nm using a Plan-Apochromat 60 x/1.4 NA objective.
  3. Save images of GUVs in .tiff format.
  4. Open the images in an image processing software (e.g., ImageJ or Fiji). Open the Brightness/Contrast setting panel. Adjust the brightness and contrast to appropriate settings that make fluorescent proteins visible.
  5. If the goal is to compare the signal intensity of different expressed proteins, first stack individual images of GUVs containing different proteins using Images to Stack panel located under Image > Stacks submenu. Then, adjust the brightness and contrast of all images using the Brightness/Contrast panel.

Subscription Required. Please recommend JoVE to your librarian.

Representative Results

Prior to encapsulation of the CFE reactions, two variants of GluR0-sfGFP harboring native and proteorhodopsin signal peptides (signal peptide sequences are presented in Supplementary Table 1), and the soluble sfGFP were individually expressed in bulk reactions, and their expression was monitored by detecting the sfGFP signal using a plate reader (Figure 2A). Membrane proteins were expressed in the absence or presence of 100 nm SUVs. Additionally, using a calibration curve that correlates sfGFP signal to its concentration (Supplementary Figure 1), concentrations of synthesized proteins were estimated (Supplementary Table 2). Clearly, soluble sfGFP had the highest expression among all three proteins, which suggests that the expression of membrane proteins imposes a burden on the CFE system, thus slowing down the reaction and lowering its yield. In addition, on average, reactions expressing membrane proteins in the presence of SUVs showed higher sfGFP signal compared to reactions lacking SUVs. This observation aligns with the findings of Steinküher et al., who showed that the expression of membrane proteins reduces the capacity of the CFE systems to produce proteins23. Nevertheless, given the successful demonstration of protein expression in bulk CFE reaction, one can reason that encapsulated CFE will also synthesize proteins inside GUVs.

Next, individual CFE reactions were encapsulated in GUVs using the inverted emulsion method to express variants of GluR0, namely WT-GluR0, PRSP-GluR0, and soluble sfGFP. While WT-GluR0, harboring GluR0 native signal peptide, demonstrated excellent expression and membrane localization (Figure 2B, left panel), its counterpart, PRSP-GluR0, which has proteorhodopsin N-terminal signal peptide, did not show similar strong membrane localization. PRSP-GluR0 was found to be more prone to aggregation and punctate formation (Figure 2B, middle panel). As expected, soluble sfGFP was expressed in GUVs and stayed in the GUV lumen (Figure 2B, right panel; see Supplementary Figure 2 for images of cohorts of GUVs).

Figure 1
Figure 1: Experimental steps of inverted emulsion. (1) Step 2.3.1 through step 2.3.3 of the protocol are visualized to demonstrate the assembly of the lipid monolayer at the interface of the lipid-oil mix and outer buffer solution. (2) Visualization of step 2.3.5 of the protocol is shown here to represent the formation of the lipid monolayer around emulsified droplets encapsulating the inner CFE solution. (3) Step 2.3.6 of the protocol shows the addition of the monolayer GUVs to the microcentrifuge tube with the lipid monolayer at the interface of a lipid-oil mix and outer buffer solution. (4) Step 2.3.7 is depicted here, in which centrifugation leads to the formation of a GUV pellet in the outer solution. (5) Step 2.3.8 is shown here, indicating the process of removing the excess lipid-in-oil mixture and outer solution. (6) Finally, step 2.3.9 is depicted here, where the GUV pellet is resuspended in the outer solution, and the GUVs are ready for incubation, followed by imaging. Please click here to view a larger version of this figure.

Figure 2
Figure 2: Protein expression in bulk CFE reactions and in GUVs encapsulating CFE reactions. (A) Fluorescence readouts of individual bulk CFE reactions expressing WT-GluR0-sfGFP, PRSP-GluR0-sfGFP, and soluble sfGFP. The soluble sfGFP graph represents the signal from a 2.5 µL reaction (standard reaction volume is 20 µL) to avoid oversaturation of the plate reader measurements. Data is presented as mean ± S.D, n = 3. (B) Left: A representative confocal image of a GUV encapsulating CFE reaction expressing WT-GluR0-sfGFP. Middle: A representative confocal image of GUVs encapsulating CFE reaction expressing PRSP-GluR0-sfGFP. Right: A representative confocal image of a GUV encapsulating CFE reaction expressing soluble sfGFP. Scale bars: 10 µm. Please click here to view a larger version of this figure.

Supplementary Figure 1: The sfGFP signal calibration curve and its corresponding linear regression analysis. Please click here to download this File.

Supplementary Figure 2: Representative confocal image of cohorts of GUVs expressing (left) WT-GluR0-sfGFP, (middle) PRSP-GluR0-sfGFP, and (right) soluble sfGFP. Scale bar: 10 µm. Please click here to download this File.

Supplementary Table 1: The amino acid sequence of wild-type and proteorhodopsin signal peptides. Please click here to download this File.

Supplementary Table 2: The concentration of synthesized proteins in bulk CFE reactions. Please click here to download this File.

Subscription Required. Please recommend JoVE to your librarian.

Discussion

Virtually any cellular process that depends on the transfer of molecules or information across the cell membrane, like cell signaling or cell excitation, requires membrane proteins. Thus, the reconstitution of membrane proteins has become the main bottleneck in realizing various synthetic cell designs for different applications. Traditional detergent-mediated reconstitution of membrane proteins in biological membranes requires GUV generation methods such as gentle swelling or electroformation. Swelling approaches usually produce small-sized vesicles, and electroformation yield significantly drops when complicated solutions, which is often the case when generating synthetic cells, are encapsulated32. Additionally, detergents solubilize the membrane protein, and their removal during the reconstitution process can cause protein misfolding33,34. On the other hand, the approach presented here relies on the cotranslational incorporation of the membrane protein into the lipid bilayer, which resembles more the natural protein biogenesis pathway in cells22.

From a technical point of view, the presented protocol is advantageous to other common encapsulation methods, such as electroformation and continuous droplet interface crossing encapsulation7,8,35,36 (cDICE), for easier implementation as the only laboratory equipment required for GUV generation is a centrifuge. As opposed to electroformation, the inverted emulsion method allows the encapsulation of different combinations of molecules with various concentrations. Additionally, compared to the original inverted emulsion technique25, this approach generates more stable GUVs that are suitable for encapsulation of CFE lysates or PURE systems. The higher GUV stability is owed to the presence of diblock copolymer in the composition of GUV membrane37 as well as the long incubation of the oil-water interface that allows the interface to be saturated with lipid molecules. Lastly, as opposed to microfluidics approaches, the protocol presented here does not require small channels and tubing. Therefore, the CFE reaction can be encapsulated as soon as it is assembled, and the shorter time of GUV assembly due to lack of flow and possible clogging prevents premature start of the CFE reaction. While the demonstration of membrane protein expression in this protocol is exclusive to PUREfrex reactions, one can extend this method to synthesize proteins using different available CFE systems, such as lysate-based bacterial or mammalian CFE systems.

The presented approach here has limitations that are caused by the oil-dependent nature of the GUV formation process and the intent to have stable GUVs. This approach is typically longer compared to other methods, such as cDICE or microfluidics, due to the long incubation time of the oil-water interface that is required for interface stabilization and high GUV yield. Additionally, lipid composition is primarily limited to POPC with small doses of other lipids or block copolymers, while other methods, such as electroformation, are more suited for the incorporation of lipids with different physical and chemical properties. While the GUV membrane composition in this method is a mixture of POPC and PBD-PEO to maximize CFE yield, possible variations in GUV membrane composition can be tested. However, further optimization of the parameters might be required for other membrane proteins. Since the droplet emulsification occurs through manual pipetting, the GUVs generated via this method are polydisperse and quite heterogeneous in size. Further, the fact that lipids are dissolved in the organic phase may occasionally cause a layer of oil between the two leaflets of the GUV membrane or contaminate the imaging chamber with oil that can be detrimental to image quality. A possible workaround for the challenge of residual oil is to replace mineral oil with a volatile organic solvent, such as diethyl ether, as shown by Tsumoto et al.38, to rely on solvent evaporation along with centrifugation during GUV formation.

While there is no demonstration of channel function in this work, inspired by previous assays used for probing reconstituted mechano- or light-sensitive channel functionality, a fluorescence microscopy-based assay is outlined. The opening of the GluR0 channel is reported to increase the membrane conductivity for K+ ions24. Because CFE reactions already contain a high concentration of K+, typical potassium indicators will not be suitable for assessing channel functionality. However, because potassium influx changes the membrane potential, sensitive membrane potential indicators such as DiBAC4(3)22 or BeRST 139 could report GluR0 activity in the presence of glutamate.

Successful reconstitution of membrane proteins in synthetic cells opens up numerous possibilities for creating synthetic cells with unprecedented abilities that more closely mimic natural cells. A current major disadvantage of synthetic cells is their inability to reproduce and recycle energy. However, with light- and chemical-dependent energy regeneration schemes that rely heavily on membrane proteins, one can envisage long-lasting synthetic cells40. Utilizing CFE systems allows the reconstitution of multiple membrane proteins that can collectively perform certain tasks. For instance, reconstitution of a ligand-gated ion channel similar to GluR0 described here, along with different voltage-gated ion channels, can lead to the construction of an excitable neuron-like synthetic cell.

Subscription Required. Please recommend JoVE to your librarian.

Disclosures

The authors declare no conflicts of interest.

Acknowledgments

APL acknowledges support from the National Science Foundation (EF1935265), the National Institutes of Health (R01-EB030031 and R21-AR080363), and the Army Research Office (80523-BB)

Materials

Name Company Catalog Number Comments
100 nm polycarbonate filter STERLITECH 1270193
96 Well Clear Bottom Plate ThermoFisher Scientific 165305
BioTek Synergy H1M Hybrid Multi-Mode Reader Agilent 11-120-533
Creatine phosphate Millipore Sigma 10621714001
CSU-X1 Confocal Scanner Unit Yokogawa CSU-X1 
Density gradient medium (Optiprep) Millipore Sigma D1556 Optional to switch with sucrose in inner solution
Filter supports Avanti 610014
Fisherbrand microtubes (1.5 mL) Fisher Scientific 05-408-129 
Folinic acid calcium salt hydrate Millipore Sigma F7878
Glucose Millipore Sigma 158968
HEPES Millipore Sigma H3375
iXon X3 camera  Andor DU-897E-CS0 
L-Glutamic acid potassium salt monohydrate Millipore Sigma G1501
Light mineral oil Millipore Sigma M5904
Magnesium acetate tetrahydrate  Millipore Sigma M5661
Mini-extruder kit (including syringe holder and extruder stand) Avanti 610020
Olympus IX81 Inverted Microscope  Olympus IX21
Olympus PlanApo N 60x Oil Microscope Objective  Olympus 1-U2B933 
PEO-b-PBD Polymer Source P41745-BdEO
pET28b-PRSP-GluR0-sfGFP plasmid DNA Homemade N/A
pET28b-sfGFP-sfCherry(1-10) plasmid DNA Homemade N/A
pET28b-WT-GluR0-sfGFP plasmid DNA Homemade N/A
POPC lipid in chloroform  Avanti 850457C
Potassium chloride Millipore Sigma P9541
PUREfrex 2.0 Cosmo Bio USA GFK-PF201
Ribonucleotide Solution Set New England BioLabs N0450
RNase Inhibitor, Murine New England BioLabs M0314S
RTS Amino Acid Sampler Biotechrabbit BR1401801
Sodium chloride Millipore Sigma S9888
Spermidine Millipore Sigma S2626
Sucrose Millipore Sigma S0389
VAPRO Vapor Pressure Osmometer Model 5600 ELITechGroup VAPRO 5600

DOWNLOAD MATERIALS LIST

References

  1. Liu, A. P., Fletcher, D. A. Biology under construction: In vitro reconstitution of cellular function. Nat Rev Mol Cell Biol. 10 (9), 644-650 (2009).
  2. Lin, A. J., Sihorwala, A. Z., Belardi, B. Engineering tissue-scale properties with synthetic cells: Forging one from many. ACS Synth Biol. 12 (7), 1889-1907 (2023).
  3. Powers, J., Jang, Y. Advancing biomimetic functions of synthetic cells through compartmentalized cell-free protein synthesis. Biomacromolecules. 24 (12), 5539-5550 (2023).
  4. Jiang, W., et al. Artificial cells: Past, present and future. ACS Nano. 16 (10), 15705-15733 (2022).
  5. Groaz, A., et al. Engineering spatiotemporal organization and dynamics in synthetic cells. WIREs Nanomed Nanobiotech. 13 (3), 1685 (2021).
  6. Sharma, B., Moghimianavval, H., Hwang, S. W., Liu, A. P. Synthetic cell as a platform for understanding membrane-membrane interactions. Membranes. 11 (12), 912 (2021).
  7. Bashirzadeh, Y., et al. Actin crosslinker competition and sorting drive emergent GUV size-dependent actin network architecture. Commun Biol. 4 (1), 1-11 (2021).
  8. Bashirzadeh, Y., Moghimianavval, H., Liu, A. P. Encapsulated actomyosin patterns drive cell-like membrane shape changes. iScience. 25 (5), 104236 (2021).
  9. Berhanu, S., Ueda, T., Kuruma, Y. Artificial photosynthetic cell producing energy for protein synthesis. Nat Commun. 10 (1), 1325 (2019).
  10. Ji, Y., Chakraborty, T., Wegner, S. V. Self-regulated and bidirectional communication in synthetic cell communities. ACS Nano. 17 (10), 8992-9002 (2023).
  11. Moghimianavval, H., Loi, K. J., Hwang, S. W., Bashirzadeh, Y., Liu, A. P. Light-based juxtacrine signaling between synthetic cells. bioRxiv. , (2024).
  12. Boyd, M. A., Thavarajah, W., Lucks, J. B., Kamat, N. P. Robust and tunable performance of a cell-free biosensor encapsulated in lipid vesicles. Science Advances. 9 (1), 6605 (2023).
  13. Schneider, B., et al. Membrane Protein expression in cell-free systems. Methods Mol Biol. 601, 165-186 (2010).
  14. Noireaux, V., Liu, A. P. The new age of cell-free biology. Annu Rev Biomed Eng. 22 (1), 51-77 (2020).
  15. Majumder, S., et al. Cell-sized mechanosensitive and biosensing compartment programmed with DNA. Chem. Commun. 53 (53), 7349-7352 (2017).
  16. Poddar, A., et al. Membrane stretching activates calcium permeability of a putative channel Pkd2 during fission yeast cytokinesis. MBoC. 33 (14), (2022).
  17. Sachse, R., Dondapati, S. K., Fenz, S. F., Schmidt, T., Kubick, S. Membrane protein synthesis in cell-free systems: From bio-mimetic systems to bio-membranes. FEBS Letters. 588 (17), 2774-2781 (2014).
  18. Dondapati, S. K., et al. Functional reconstitution of membrane proteins derived from eukaryotic cell-free systems. Front Pharmacol. 10, 917 (2019).
  19. Majumder, S., et al. In vitro synthesis and reconstitution using mammalian cell-free lysates enables the systematic study of the regulation of LINC complex assembly. Biochemistry. 61 (14), 1495-1507 (2022).
  20. Niwa, T., et al. Comprehensive study of liposome-assisted synthesis of membrane proteins using a reconstituted cell-free translation system. Sci Rep. 5 (1), 18025 (2015).
  21. Moghimianavval, H., Hsu, Y. Y., Groaz, A., Liu, A. P. In vitro reconstitution platforms of mammalian cell-free expressed membrane proteinsmembrane proteins. Methods Mol Biol. 2433, 105-120 (2022).
  22. Eaglesfield, R., Madsen, M. A., Sanyal, S., Reboud, J., Amtmann, A. Cotranslational recruitment of ribosomes in protocells recreates a translocon-independent mechanism of proteorhodopsin biogenesis. iScience. 24 (5), 102429 (2021).
  23. Steinküher, J., et al. Improving cell-free expression of membrane proteins by tuning ribosome cotranslational membrane association and nascent chain aggregation. bioRxiv. , (2023).
  24. Chen, G. Q., Cui, C., Mayer, M. L., Gouaux, E. Functional characterization of a potassium-selective prokaryotic glutamate receptor. Nature. 402 (6763), 817-821 (1999).
  25. Pautot, S., Frisken, B. J., Weitz, D. A. Production of unilamellar vesicles using an inverted emulsion. Langmuir. 19 (7), 2870-2879 (2003).
  26. Hsu, Y. Y., et al. Calcium-triggered DNA-mediated membrane fusion in synthetic cells. Chemical Communications. 59 (57), 8806-8809 (2023).
  27. Moghimianavval, H., et al. Engineering functional membrane-membrane interfaces by interspy. Small. 19 (13), 2202104 (2023).
  28. Sun, Z. Z., et al. Protocols for implementing an Escherichia coli based TX-TL cell-free expression system for synthetic biology. J Vis Exp. (79), e50762 (2013).
  29. Jacobs, M. L., Boyd, M. A., Kamat, N. P. Diblock copolymers enhance folding of a mechanosensitive membrane protein during cell-free expression. PNAS. 116 (10), 4031-4036 (2019).
  30. Kostarelos, K., Tadros, T. F., Luckham, P. F. Physical conjugation of (tri-) block copolymers to liposomes toward the construction of sterically stabilized vesicle systems. Langmuir. 15 (2), 369-376 (1999).
  31. Adir, O., et al. Preparing protein producing synthetic cells using cell free bacterial extracts, liposomes and emulsion transfer. J Vis Exp. (158), e60829 (2020).
  32. van de Cauter, L., van Buren, L., Koenderink, G. H., Ganzinger, K. A. Exploring giant unilamellar vesicle production for artificial cells - current challenges and future directions. Small Methods. 7 (12), 2300416 (2023).
  33. Seddon, A. M., Curnow, P., Booth, P. J. Membrane proteins, lipids and detergents: Not just a soap opera. Biochim Biophys Acta Biomembr. 1666 (1), 105-117 (2004).
  34. Guo, Y. Detergent-free systems for structural studies of membrane proteins. Biochem Soc Trans. 49 (3), 1361-1374 (2021).
  35. Bashirzadeh, Y., Wubshet, N., Litschel, T., Schwille, P., Liu, A. P. Rapid encapsulation of reconstituted cytoskeleton inside giant unilamellar vesicles. J Vis Exp. (177), e63332 (2021).
  36. Hwang, S. W., et al. Hybrid vesicles enable mechano-responsive hydrogel degradation. Angew Chemie Int Ed. 62 (41), e202308509 (2023).
  37. Rideau, E., Dimova, R., Schwille, P., Wurm, F. R., Landfester, K. Liposomes and polymersomes: a comparative review towards cell mimicking. Chem Soc Rev. 47 (23), 8572-8610 (2018).
  38. Tsumoto, K., Hayashi, Y., Tabata, J., Tomita, M. A reverse-phase method revisited: Rapid high-yield preparation of giant unilamellar vesicles (GUVs) using emulsification followed by centrifugation. Colloids Surf A: Physicochem Eng Asp. 546, 74-82 (2018).
  39. Huang, Y. L., Walker, A. S., Miller, E. W. A photostable silicon rhodamine platform for optical voltage sensing. J Am Chem Soc. 137 (33), 10767-10776 (2015).
  40. Bailoni, E., et al. Minimal out-of-equilibrium metabolism for synthetic cells: A membrane perspective. ACS Synth Biol. 12 (4), 922-946 (2023).
This article has been published
Video Coming Soon
PDF DOI DOWNLOAD MATERIALS LIST

Cite this Article

Loi, K. J., Moghimianavval, H., Liu, More

Loi, K. J., Moghimianavval, H., Liu, A. P. Reconstitution of the Bacterial Glutamate Receptor Channel by Encapsulation of a Cell-Free Expression System. J. Vis. Exp. (205), e66595, doi:10.3791/66595 (2024).

Less
Copy Citation Download Citation Reprints and Permissions
View Video

Get cutting-edge science videos from JoVE sent straight to your inbox every month.

Waiting X
Simple Hit Counter