Aindrila Mukhopadhyay Physical Biosciences Division Lawrence Berkeley National Laboratory Biography Publications Institution JoVE Articles Aindrila Mukhopadhyay has not added a biography. If you are Aindrila Mukhopadhyay and would like to personalize this page please email our Author Liaison for assistance. Publications Development of a Native Escherichia Coli Induction System for Ionic Liquid Tolerance PloS One. 2014 | Pubmed ID: 24983352 Exploring the Role of CheA3 in Desulfovibrio Vulgaris Hildenborough Motility Frontiers in Microbiology. 2014 | Pubmed ID: 24639670 Engineering Dynamic Pathway Regulation Using Stress-response Promoters Nature Biotechnology. Nov, 2013 | Pubmed ID: 24142050 New Family of Tungstate-responsive Transcriptional Regulators in Sulfate-reducing Bacteria Journal of Bacteriology. Oct, 2013 | Pubmed ID: 23913324 Dynamic Cyanobacterial Response to Hydration and Dehydration in a Desert Biological Soil Crust The ISME Journal. Nov, 2013 | Pubmed ID: 23739051 Characterization of NaCl Tolerance in Desulfovibrio Vulgaris Hildenborough Through Experimental Evolution The ISME Journal. Sep, 2013 | Pubmed ID: 23575373 Enhancing Fatty Acid Production by the Expression of the Regulatory Transcription Factor FadR Metabolic Engineering. Nov, 2012 | Pubmed ID: 23026122 Functional Responses of Methanogenic Archaea to Syntrophic Growth The ISME Journal. Nov, 2012 | Pubmed ID: 22739494 A Thermophilic Ionic Liquid-tolerant Cellulase Cocktail for the Production of Cellulosic Biofuels PloS One. 2012 | Pubmed ID: 22649505 Transcriptomic and Proteomic Analyses of Desulfovibrio Vulgaris Biofilms: Carbon and Energy Flow Contribute to the Distinct Biofilm Growth State BMC Genomics. 2012 | Pubmed ID: 22507456 Biosynthesis and Incorporation of Side-chain-truncated Lignin Monomers to Reduce Lignin Polymerization and Enhance Saccharification Plant Biotechnology Journal. Jun, 2012 | Pubmed ID: 22458713 Isolation and Proteomic Characterization of the Arabidopsis Golgi Defines Functional and Novel Components Involved in Plant Cell Wall Biosynthesis Plant Physiology. May, 2012 | Pubmed ID: 22430844 Arabidopsis Deficient in Cutin Ferulate Encodes a Transferase Required for Feruloylation of ω-hydroxy Fatty Acids in Cutin Polyester Plant Physiology. Feb, 2012 | Pubmed ID: 22158675 Modular Engineering of L-tyrosine Production in Escherichia Coli Applied and Environmental Microbiology. Jan, 2012 | Pubmed ID: 22020510 Systematic Mapping of Two Component Response Regulators to Gene Targets in a Model Sulfate Reducing Bacterium Genome Biology. 2011 | Pubmed ID: 21992415 Identification and Microbial Production of a Terpene-based Advanced Biofuel Nature Communications. 2011 | Pubmed ID: 21952217 How Sulphate-reducing Microorganisms Cope with Stress: Lessons from Systems Biology Nature Reviews. Microbiology. Jun, 2011 | Pubmed ID: 21572460 Engineering Microbial Biofuel Tolerance and Export Using Efflux Pumps Molecular Systems Biology. May, 2011 | Pubmed ID: 21556065 The Interconversion of UDP-arabinopyranose and UDP-arabinofuranose is Indispensable for Plant Development in Arabidopsis The Plant Cell. Apr, 2011 | Pubmed ID: 21478444 Targeted Proteomics for Metabolic Pathway Optimization: Application to Terpene Production Metabolic Engineering. Mar, 2011 | Pubmed ID: 21215324 Analysis of the Arabidopsis Cytosolic Proteome Highlights Subcellular Partitioning of Central Plant Metabolism Journal of Proteome Research. Apr, 2011 | Pubmed ID: 21166475 A Model for Improving Microbial Biofuel Production Using a Synthetic Feedback Loop Systems and Synthetic Biology. Jun, 2010 | Pubmed ID: 20805930 Hydrogen Peroxide-induced Oxidative Stress Responses in Desulfovibrio Vulgaris Hildenborough Environmental Microbiology. Oct, 2010 | Pubmed ID: 20482586 4.0-A Resolution Cryo-EM Structure of the Mammalian Chaperonin TRiC/CCT Reveals Its Unique Subunit Arrangement Proceedings of the National Academy of Sciences of the United States of America. Mar, 2010 | Pubmed ID: 20194787 Functional Genomic Study of Exogenous N-butanol Stress in Escherichia Coli Applied and Environmental Microbiology. Mar, 2010 | Pubmed ID: 20118358 Global Transcriptional, Physiological, and Metabolite Analyses of the Responses of Desulfovibrio Vulgaris Hildenborough to Salt Adaptation Applied and Environmental Microbiology. Mar, 2010 | Pubmed ID: 20038696 Study of Stationary Phase Metabolism Via Isotopomer Analysis of Amino Acids from an Isolated Protein Biotechnology Progress. Jan-Feb, 2010 | Pubmed ID: 19899123 A Rapid and Inexpensive Labeling Method for Microarray Gene Expression Analysis BMC Biotechnology. 2009 | Pubmed ID: 19939278 Expression Profiling of Hypothetical Genes in Desulfovibrio Vulgaris Leads to Improved Functional Annotation Nucleic Acids Research. May, 2009 | Pubmed ID: 19293273 Overcoming the Anaerobic Hurdle in Phenotypic Microarrays: Generation and Visualization of Growth Curve Data for Desulfovibrio Vulgaris Hildenborough Journal of Microbiological Methods. Feb, 2009 | Pubmed ID: 18996155 Importance of Systems Biology in Engineering Microbes for Biofuel Production Current Opinion in Biotechnology. Jun, 2008 | Pubmed ID: 18515068 Biofuel Alternatives to Ethanol: Pumping the Microbial Well Trends in Biotechnology. Jul, 2008 | Pubmed ID: 18471913 Post-translational Modifications of Desulfovibrio Vulgaris Hildenborough Sulfate Reduction Pathway Proteins Journal of Proteome Research. Jun, 2008 | Pubmed ID: 18416566 Isotopomer Distributions in Amino Acids from a Highly Expressed Protein As a Proxy for Those from Total Protein Analytical Chemistry. Feb, 2008 | Pubmed ID: 18179240 Cell-wide Responses to Low-oxygen Exposure in Desulfovibrio Vulgaris Hildenborough Journal of Bacteriology. Aug, 2007 | Pubmed ID: 17545284 Pathway Confirmation and Flux Analysis of Central Metabolic Pathways in Desulfovibrio Vulgaris Hildenborough Using Gas Chromatography-mass Spectrometry and Fourier Transform-ion Cyclotron Resonance Mass Spectrometry Journal of Bacteriology. Feb, 2007 | Pubmed ID: 17114264 Constitutive Activation of Two-component Response Regulators: Characterization of VirG Activation in Agrobacterium Tumefaciens Journal of Bacteriology. Jul, 2006 | Pubmed ID: 16816192 Study of Nitrate Stress in Desulfovibrio Vulgaris Hildenborough Using ITRAQ Proteomics Briefings in Functional Genomics & Proteomics. Jun, 2006 | Pubmed ID: 16772278 Salt Stress in Desulfovibrio Vulgaris Hildenborough: an Integrated Genomics Approach Journal of Bacteriology. Jun, 2006 | Pubmed ID: 16707698 Integrating Input from Multiple Signals: the VirA/VirG Two-component System of Agrobacterium Tumefaciens Chembiochem : a European Journal of Chemical Biology. Nov, 2004 | Pubmed ID: 15515087 שיטת צ'יפ (DAP-שבב) מטוהרת-DNA-זיקה לקביעת מטרות גן לחיידקית שתי מערכות רגולטוריות רכיב Lara Rajeev1, Eric G. Luning1, Aindrila Mukhopadhyay1 1Physical Biosciences Division, Lawrence Berkeley National Laboratory JoVE 51715 Biology
שיטת צ'יפ (DAP-שבב) מטוהרת-DNA-זיקה לקביעת מטרות גן לחיידקית שתי מערכות רגולטוריות רכיב Lara Rajeev1, Eric G. Luning1, Aindrila Mukhopadhyay1 1Physical Biosciences Division, Lawrence Berkeley National Laboratory JoVE 51715 Biology