Andrew K. Benson

Publications

• Captive Common Marmosets (Callithrix Jacchus) Are Colonized Throughout Their Lives by a Community of Species with Species-Specific Genomic Content That Can Support Adaptation to Distinct Metabolic Niches
  MBio. 08, 2021  |   Pubmed ID: 34340536
• ProkEvo: an Automated, Reproducible, and Scalable Framework for High-throughput Bacterial Population Genomics Analyses
  PeerJ. 2021  |   Pubmed ID: 34055480
• Fecal Short-Chain Fatty Acid Concentrations Increase in Newly Paired Male Marmosets (Callithrix Jacchus)
  MSphere. 09, 2020  |   Pubmed ID: 32938699
• Stearidonic-Enriched Soybean Oil Modulates Obesity, Glucose Metabolism, and Fatty Acid Profiles Independently of Akkermansia Muciniphila
  Molecular Nutrition & Food Research. 09, 2020  |   Pubmed ID: 32656952
• Sex Bias in Gut Microbiome Transmission in Newly Paired Marmosets (Callithrix Jacchus)
  MSystems. Mar, 2020  |   Pubmed ID: 32209720
• Microbial Community of Saline, Alkaline Lakes in the Nebraska Sandhills Based on 16S RRNA Gene Amplicon Sequence Data
  Microbiology Resource Announcements. Mar, 2019  |   Pubmed ID: 30938697
• Commensal Strains Can Promote Intestinal Inflammation Via Differential Interleukin-6 Production
  Frontiers in Immunology. 2018  |   Pubmed ID: 30356663
• Experimental Evaluation of the Importance of Colonization History in Early-life Gut Microbiota Assembly
  ELife. 09, 2018  |   Pubmed ID: 30226190
• A Gut Pathobiont Synergizes with the Microbiota to Instigate Inflammatory Disease Marked by Immunoreactivity Against Other Symbionts but Not Itself
  Scientific Reports. 12, 2017  |   Pubmed ID: 29255158
• A Real-time PCR Assay for Accurate Quantification of the Individual Members of the Altered Schaedler Flora Microbiota in Gnotobiotic Mice
  Journal of Microbiological Methods. 04, 2017  |   Pubmed ID: 28189782
• Molecular Characterization of the Intestinal Microbiota in Patients with and Without Abdominal Bloating
  American Journal of Physiology. Gastrointestinal and Liver Physiology. Mar, 2016  |   Pubmed ID: 26702134
• Alignment Behaviors of Short Peptides Provide a Roadmap for Functional Profiling of Metagenomic Data
  BMC Genomics. Dec, 2015  |   Pubmed ID: 26691573
• Host Genetic Architecture and the Landscape of Microbiome Composition: Humans Weigh In
  Genome Biology. Sep, 2015  |   Pubmed ID: 26395444
• Microbial Successions Are Associated with Changes in Chemical Profiles of a Model Refrigerated Fresh Pork Sausage During an 80-day Shelf Life Study
  Applied and Environmental Microbiology. Sep, 2014  |   Pubmed ID: 24928886
• Molecular Evolution of Glycoside Hydrolase Genes in the Western Corn Rootworm (Diabrotica Virgifera Virgifera)
  PloS One. 2014  |   Pubmed ID: 24718603
• Drosophila Melanogaster Selection for Survival After Infection with Bacillus Cereus Spores: Evolutionary Genetic and Phenotypic Investigations of Respiration and Movement
  International Journal of Evolutionary Biology. 2013  |   Pubmed ID: 23634317
• Drosophila Melanogaster Selection for Survival of Bacillus Cereus Infection: Life History Trait Indirect Responses
  International Journal of Evolutionary Biology. 2012  |   Pubmed ID: 23094195
• A Grammar-based Distance Metric Enables Fast and Accurate Clustering of Large Sets of 16S Sequences
  BMC Bioinformatics. Dec, 2010  |   Pubmed ID: 21167044
• Individuality in Gut Microbiota Composition is a Complex Polygenic Trait Shaped by Multiple Environmental and Host Genetic Factors
  Proceedings of the National Academy of Sciences of the United States of America. Nov, 2010  |   Pubmed ID: 20937875
• Catabolite Repression and Virulence Gene Expression in Listeria Monocytogenes
  Current Microbiology. Aug, 2004  |   Pubmed ID: 15297913