Damien M. O'Halloran

Publications

• Database of Glutamate-gated Chloride (GluCl) Subunits Across 125 Nematode Species: Patterns of Gene Accretion and Sequence Diversification
  G3 (Bethesda, Md.). 02, 2022  |   Pubmed ID: 35100348
• Pan-phylum Genome-wide Identification of Sodium Calcium Exchangers Reveal Heterogeneous Expansions and Possible Roles in Nematode Parasitism
  Gene. Feb, 2022  |   Pubmed ID: 34756961
• CRISPR-PN2: a Flexible and Genome-aware Platform for Diverse CRISPR Experiments in Parasitic Nematodes
  BioTechniques. 09, 2021  |   Pubmed ID: 34420406
• The Diversity of ABC Transporter Genes Across the Phylum Nematoda
  Parasitology International. Aug, 2021  |   Pubmed ID: 33901678
• Chemogenomic Approach to Identifying Nematode Chemoreceptor Drug Targets in the Entomopathogenic Nematode Heterorhabditis Bacteriophora
  Computational Biology and Chemistry. Jun, 2021  |   Pubmed ID: 33667976
• Secreted Virulence Factors from Heterorhabditis Bacteriophora Highlight Its Utility As a Model Parasite Among Clade V Nematodes
  International Journal for Parasitology. 04, 2021  |   Pubmed ID: 33421438
• NemChR-DB: a Database of Parasitic Nematode Chemosensory G-protein Coupled Receptors
  International Journal for Parasitology. 04, 2021  |   Pubmed ID: 33275943
• A Putative UDP-glycosyltransferase from Heterorhabditis Bacteriophora Suppresses Antimicrobial Peptide Gene Expression and Factors Related to Ecdysone Signaling
  Scientific Reports. 07, 2020  |   Pubmed ID: 32704134
• Transcriptomic Analysis of Hookworm Ancylostoma Ceylanicum Life Cycle Stages Reveals Changes in G-protein Coupled Receptor Diversity Associated with the Onset of Parasitism
  International Journal for Parasitology. 07, 2020  |   Pubmed ID: 32592811
• Simulation Model of CA1 Pyramidal Neurons Reveal Opposing Roles for the Na+/Ca2+ Exchange Current and Ca2+-activated K+ Current During Spike-timing Dependent Synaptic Plasticity
  PloS One. 2020  |   Pubmed ID: 32150746
• Module for SWC Neuron Morphology File Validation and Correction Enabled for High Throughput Batch Processing
  PloS One. 2020  |   Pubmed ID: 31971963
• An Inducible Model of Human Amylin Overexpression Reveals Diverse Transcriptional Changes
  Neuroscience Letters. 06, 2019  |   Pubmed ID: 30974231
• Isolation and Characterization of a Naturally Occurring Multidrug-resistant Strain of the Canine Hookworm, Ancylostoma Caninum
  International Journal for Parasitology. 04, 2019  |   Pubmed ID: 30771359
• Genome Aware CRISPR GRNA Target Prediction for Parasitic Nematodes
  Molecular and Biochemical Parasitology. 01, 2019  |   Pubmed ID: 30529475
• NCX-DB: a Unified Resource for Integrative Analysis of the Sodium Calcium Exchanger Super-family
  BMC Neuroscience. 04, 2018  |   Pubmed ID: 29649983
• Refined Ab Initio Gene Predictions of Heterorhabditis Bacteriophora Using RNA-seq
  International Journal for Parasitology. 07, 2018  |   Pubmed ID: 29530648
• FastQ_brew: Module for Analysis, Preprocessing, and Reformatting of FASTQ Sequence Data
  BMC Research Notes. Jul, 2017  |   Pubmed ID: 28701181
• Phylo-node: A Molecular Phylogenetic Toolkit Using Node.js
  PloS One. 2017  |   Pubmed ID: 28410421
• STITCHER 2.0: Primer Design for Overlapping PCR Applications
  Scientific Reports. 03, 2017  |   Pubmed ID: 28358011
• Contribution of the Cyclic Nucleotide Gated Channel Subunit, CNG-3, to Olfactory Plasticity in Caenorhabditis Elegans
  Scientific Reports. 03, 2017  |   Pubmed ID: 28279024
• The NCLX-type Na/Ca Exchanger NCX-9 Is Required for Patterning of Neural Circuits in
  The Journal of Biological Chemistry. Mar, 2017  |   Pubmed ID: 28196860
• Identification of Candidate Infection Genes from the Model Entomopathogenic Nematode Heterorhabditis Bacteriophora
  BMC Genomics. 01, 2017  |   Pubmed ID: 28049427
• A Guide to Using STITCHER for Overlapping Assembly PCR Applications
  Methods in Molecular Biology (Clifton, N.J.). 2017  |   Pubmed ID: 27671928
• The Cyclic Nucleotide Gated Channel Subunit CNG-1 Instructs Behavioral Outputs in Caenorhabditis Elegans by Coincidence Detection of Nutritional Status and Olfactory Input
  Neuroscience Letters. Oct, 2016  |   Pubmed ID: 27561605
• NemaCount: Quantification of Nematode Chemotaxis Behavior in a Browser
  Invertebrate Neuroscience : IN. Jun, 2016  |   Pubmed ID: 27209025
• PrimerMapper: High Throughput Primer Design and Graphical Assembly for PCR and SNP Detection
  Scientific Reports. Feb, 2016  |   Pubmed ID: 26853558
• Nematode Sodium Calcium Exchangers: A Surprising Lack of Transport
  Bioinformatics and Biology Insights. 2016  |   Pubmed ID: 26848260
• STITCHER: A Web Resource for High-throughput Design of Primers for Overlapping PCR Applications
  BioTechniques. Jun, 2015  |   Pubmed ID: 26054769
• PrimerView: High-throughput Primer Design and Visualization
  Source Code for Biology and Medicine. 2015  |   Pubmed ID: 26052342
• Analysis of the Na+/Ca2+ Exchanger Gene Family Within the Phylum Nematoda
  PloS One. 2014  |   Pubmed ID: 25397810
• Recent Structural and Functional Insights into the Family of Sodium Calcium Exchangers
  Genesis (New York, N.Y. : 2000). Dec, 2013  |   Pubmed ID: 24376088
• Nuclear PKG Localization is Regulated by G₀ Alpha and is Necessary in the AWB Neurons to Mediate Avoidance in Caenorhabditis Elegans
  Neuroscience Letters. Oct, 2013  |   Pubmed ID: 23954825
• Insight into the Family of Na+/Ca2+ Exchangers of Caenorhabditis Elegans
  Genetics. Oct, 2013  |   Pubmed ID: 23893482
• Investigating the Relationship Between Topology and Evolution in a Dynamic Nematode Odor Genetic Network
  International Journal of Evolutionary Biology. 2012  |   Pubmed ID: 23056995
• Changes in CGMP Levels Affect the Localization of EGL-4 in AWC in Caenorhabditis Elegans
  PloS One. 2012  |   Pubmed ID: 22319638