Dong Xu Center for Computational Medicine and Bioinformatics University of Michigan Biography Publications Institution JoVE Articles Dong Xu has not added a biography. If you are Dong Xu and would like to personalize this page please email our Author Liaison for assistance. Publications An Epidemiological Survey of Children's Iodine Nutrition and Goitre Status in Regions with Mildly Excessive Iodine in Drinking Water in Hebei Province, China Public Health Nutrition. Feb, 2012 | Pubmed ID: 22314228 Evolutionary Dynamics of Protein Domain Architecture in Plants BMC Evolutionary Biology. Jan, 2012 | Pubmed ID: 22252370 The Successful Treatment of Flat Warts with Auricular Acupuncture International Journal of Dermatology. Feb, 2012 | Pubmed ID: 22250633 Protein Databases on the Internet Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [et Al.]. Jan, 2012 | Pubmed ID: 22237858 Cloning and Expression Analysis of Two Different LhcSR Genes Involved in Stress Adaptation in an Antarctic Microalga, Chlamydomonas Sp. ICE-L Extremophiles : Life Under Extreme Conditions. Jan, 2012 | Pubmed ID: 22212653 The Validity of a Reference Gene is Highly Dependent on the Experimental Conditions in Green Alga Ulva Linza Current Genetics. Feb, 2012 | Pubmed ID: 22205301 Correlation Between Posttranslational Modification and Intrinsic Disorder in Protein Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2012 | Pubmed ID: 22174266 Prediction of Protein Tertiary Structures Using MUFOLD Methods in Molecular Biology (Clifton, N.J.). 2012 | Pubmed ID: 22130979 Comparative Proteomic Analysis Revealed Metabolic Changes and the Translational Regulation of Cry Protein Synthesis in Bacillus Thuringiensis Journal of Proteomics. Feb, 2012 | Pubmed ID: 22119885 Preparation and Characteristics of Bio-oil from the Marine Brown Alga Sargassum Patens C. Agardh Bioresource Technology. Jan, 2012 | Pubmed ID: 22119311 Genomic and Genetic Evidence for the Loss of Umami Taste in Bats Genome Biology and Evolution. Jan, 2012 | Pubmed ID: 22117084 Initialization Independent Clustering with Actively Self-training Method IEEE Transactions on Systems, Man, and Cybernetics. Part B, Cybernetics : a Publication of the IEEE Systems, Man, and Cybernetics Society. Feb, 2012 | Pubmed ID: 22086542 Histogram Contextualization IEEE Transactions on Image Processing : a Publication of the IEEE Signal Processing Society. Feb, 2012 | Pubmed ID: 21824847 Human Gait Recognition Using Patch Distribution Feature and Locality-constrained Group Sparse Representation IEEE Transactions on Image Processing : a Publication of the IEEE Signal Processing Society. Jan, 2012 | Pubmed ID: 21724511 Use Experience Evaluation of Google Search for Obtaining Medical Knowledge: a Case Study International Journal of Data Mining and Bioinformatics. 2011 | Pubmed ID: 22295748 Visual Event Recognition in Videos by Learning from Web Data IEEE Transactions on Pattern Analysis and Machine Intelligence. Dec, 2011 | Pubmed ID: 22201057 Right Ventricular and Left Atrial and Left Ventricular Myxomas: Report of a Case Surgery Today. Dec, 2011 | Pubmed ID: 22200753 Pro-oncogenic Potential of NM23-H2 in Hepatocellular Carcinoma Experimental & Molecular Medicine. Dec, 2011 | Pubmed ID: 22192927 [Impact of Prior Cerebral Infarction on In-hospital Mortality in Patients with Acute Myocardial Infarction] Zhonghua Nei Ke Za Zhi [Chinese Journal of Internal Medicine]. Sep, 2011 | Pubmed ID: 22176961 [Clinical and Coronary Angiographic Features of Patients with Systemic Vasculitis and Coronary Artery Disease] Zhonghua Xin Xue Guan Bing Za Zhi. Aug, 2011 | Pubmed ID: 22169420 Detection of Sudden Pedestrian Crossings for Driving Assistance Systems IEEE Transactions on Systems, Man, and Cybernetics. Part B, Cybernetics : a Publication of the IEEE Systems, Man, and Cybernetics Society. Nov, 2011 | Pubmed ID: 22147306 Inhibition of Snowshoe Hare Succinate Dehydrogenase Activity As a Mechanism of Deterrence for Papyriferic Acid in Birch Journal of Chemical Ecology. Dec, 2011 | Pubmed ID: 22116690 Improving the Physical Realism and Structural Accuracy of Protein Models by a Two-step Atomic-level Energy Minimization Biophysical Journal. Nov, 2011 | Pubmed ID: 22098752 Automated Protein Structure Modeling in CASP9 by I-TASSER Pipeline Combined with QUARK-based Ab Initio Folding and FG-MD-based Structure Refinement Proteins. 2011 | Pubmed ID: 22069036 Phosphorus Removal by Laboratory-scale Unvegetated Vertical-flow Constructed Wetland Systems Using Anthracite, Steel Slag and Related Blends As Substrate Water Science and Technology : a Journal of the International Association on Water Pollution Research. 2011 | Pubmed ID: 22049770 Sliding Window and Regression Based Cup Detection in Digital Fundus Images for Glaucoma Diagnosis Medical Image Computing and Computer-assisted Intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 2011 | Pubmed ID: 22003677 The Management of Undesirable Cyanobacteria Blooms in Channel Catfish Ponds Using a Constructed Wetland: Contribution to the Control of Off-flavor Occurrences Water Research. Dec, 2011 | Pubmed ID: 22000715 MUFOLD-WQA: A New Selective Consensus Method for Quality Assessment in Protein Structure Prediction Proteins. 2011 | Pubmed ID: 21997748 A Multilayer Evaluation Approach for Protein Structure Prediction and Model Quality Assessment Proteins. 2011 | Pubmed ID: 21997706 In-situ Cadmium Phytoremediation Using Solanum Nigrum L.: the Bio-accumulation Characteristics Trail International Journal of Phytoremediation. Nov-Dec, 2011 | Pubmed ID: 21972568 Spectral Embedded Clustering: a Framework for In-sample and Out-of-sample Spectral Clustering IEEE Transactions on Neural Networks / a Publication of the IEEE Neural Networks Council. Nov, 2011 | Pubmed ID: 21965198 Hole Doping and Surface Functionalization of Single-walled Carbon Nanotube Chemiresistive Sensors for Ultrasensitive and Highly Selective Organophosphor Vapor Detection Nanotechnology. Oct, 2011 | Pubmed ID: 21934197 [Investigation and Countermeasures Analysis of Catering Waste in Southern City in China] Huan Jing Ke Xue= Huanjing Kexue / [bian Ji, Zhongguo Ke Xue Yuan Huan Jing Ke Xue Wei Yuan Hui "Huan Jing Ke Xue" Bian Ji Wei Yuan Hui.]. Jul, 2011 | Pubmed ID: 21922847 Evaluation of the Potential Role of the Macroalga Laminaria Japonica for Alleviating Coastal Eutrophication Bioresource Technology. Nov, 2011 | Pubmed ID: 21890351 A Multimedia Retrieval Framework Based on Semi-Supervised Ranking and Relevance Feedback IEEE Transactions on Pattern Analysis and Machine Intelligence. Aug, 2011 | Pubmed ID: 21844624 Gender Differences in Foot Shape: a Study of Chinese Young Adults Sports Biomechanics / International Society of Biomechanics in Sports. Jun, 2011 | Pubmed ID: 21834393 A Dual-targeted Soybean Protein is Involved in Bradyrhizobium Japonicum Infection of Soybean Root Hair and Cortical Cells Molecular Plant-microbe Interactions : MPMI. Sep, 2011 | Pubmed ID: 21815830 Prediction of Drought-resistant Genes in Arabidopsis Thaliana Using SVM-RFE PloS One. 2011 | Pubmed ID: 21789178 A Sampling-based Method for Ranking Protein Structural Models by Integrating Multiple Scores and Features Current Protein & Peptide Science. Sep, 2011 | Pubmed ID: 21787308 Targeted Bisulfite Sequencing by Solution Hybrid Selection and Massively Parallel Sequencing Nucleic Acids Research. Oct, 2011 | Pubmed ID: 21785137 Hexafluorobisphenol A Covalently Functionalized Single-walled Carbon Nanotubes for Detection of Dimethyl Methylphosphonate Vapor Journal of Nanoscience and Nanotechnology. Jun, 2011 | Pubmed ID: 21770116 Improving Efficiency of Adriamycin Crossing Blood Brain Barrier by Combination of Thermosensitive Liposomes and Hyperthermia Biological & Pharmaceutical Bulletin. 2011 | Pubmed ID: 21720013 Comparison of Daily Anti-hypertensive Effects of Amlodipine and Nifedipine Coat-core Using Ambulatory Blood Pressure Monitoring - Utility of "hypobaric Curve" and "hypobaric Area" Clinical and Experimental Hypertension (New York, N.Y. : 1993). 2011 | Pubmed ID: 21699449 Improving Web Image Search by Bag-based Reranking IEEE Transactions on Image Processing : a Publication of the IEEE Signal Processing Society. Nov, 2011 | Pubmed ID: 21659029 Domain Transfer Multiple Kernel Learning IEEE Transactions on Pattern Analysis and Machine Intelligence. May, 2011 | Pubmed ID: 21646679 [Removal Nitrogen of Integrated Vertical-flow Constructed Wetland Under Aeration Condition] Huan Jing Ke Xue= Huanjing Kexue / [bian Ji, Zhongguo Ke Xue Yuan Huan Jing Ke Xue Wei Yuan Hui "Huan Jing Ke Xue" Bian Ji Wei Yuan Hui.]. Mar, 2011 | Pubmed ID: 21634169 Targeting Oncogenic MiR-335 Inhibits Growth and Invasion of Malignant Astrocytoma Cells Molecular Cancer. 2011 | Pubmed ID: 21592405 Low-dose Rituximab Therapy for Refractory Thrombocytopenia in Patients with Systemic Lupus Erythematosus--a Prospective Pilot Study Rheumatology (Oxford, England). Sep, 2011 | Pubmed ID: 21571767 Improving a Consensus Approach for Protein Structure Selection by Removing Redundancy IEEE/ACM Transactions on Computational Biology and Bioinformatics / IEEE, ACM. Nov-Dec, 2011 | Pubmed ID: 21519117 Use of Coronary Anatomy and Late Enhancement Information Both Derived from Contrast-enhanced Whole-heart Coronary MRA at 3 T for the Assessment of Ischemic Left Ventricular Dysfunction Clinical Imaging. May-Jun, 2011 | Pubmed ID: 21513861 A Protein Domain Co-occurrence Network Approach for Predicting Protein Function and Inferring Species Phylogeny PloS One. 2011 | Pubmed ID: 21455299 Homolog-specific PCR Primer Design for Profiling Splice Variants Nucleic Acids Research. May, 2011 | Pubmed ID: 21415011 CT- and Computer-based Features of Small Hamartomas Clinical Imaging. Mar-Apr, 2011 | Pubmed ID: 21377049 Triptolide-induced Cell Cycle Arrest and Apoptosis in Human Renal Cell Carcinoma Cells Oncology Reports. Apr, 2011 | Pubmed ID: 21271220 Modulus of Elasticity of Human Periodontal Ligament by Optical Measurement and Numerical Simulation The Angle Orthodontist. Mar, 2011 | Pubmed ID: 21208074 The Effects of Boehmeria Nivea (L.) Gaud. on Embryonic Development: in Vivo and in Vitro Studies Journal of Ethnopharmacology. Mar, 2011 | Pubmed ID: 21195153 Long-term Treatment with Entecavir Induces Reversal of Advanced Fibrosis or Cirrhosis in Patients with Chronic Hepatitis B Clinical Gastroenterology and Hepatology : the Official Clinical Practice Journal of the American Gastroenterological Association. Mar, 2011 | Pubmed ID: 21145419 Contrast-enhanced Whole-heart Coronary MRA at 3.0T for the Evaluation of Cardiac Venous Anatomy The International Journal of Cardiovascular Imaging. Oct, 2011 | Pubmed ID: 21120611 Semisupervised Dimensionality Reduction and Classification Through Virtual Label Regression IEEE Transactions on Systems, Man, and Cybernetics. Part B, Cybernetics : a Publication of the IEEE Systems, Man, and Cybernetics Society. Jun, 2011 | Pubmed ID: 21118781 Textual Query of Personal Photos Facilitated by Large-scale Web Data IEEE Transactions on Pattern Analysis and Machine Intelligence. May, 2011 | Pubmed ID: 20714015 Widespread Losses of Vomeronasal Signal Transduction in Bats Molecular Biology and Evolution. Jan, 2011 | Pubmed ID: 20693241 [Comparison of RDNA Internal Transcribed Spacer Sequences in Asparagus] Zhong Yao Cai = Zhongyaocai = Journal of Chinese Medicinal Materials. Oct, 2010 | Pubmed ID: 21355188 [Spectrum Analysis Methods of Protein Adsorption and Design of Biomedical Materials] Guang Pu Xue Yu Guang Pu Fen Xi = Guang Pu. Dec, 2010 | Pubmed ID: 21322223 [Application of Acupuncture-assisted Anesthesia in Prostate Biopsy Via the Perineum] Zhongguo Zhen Jiu = Chinese Acupuncture & Moxibustion. Dec, 2010 | Pubmed ID: 21290841 The Musite Open-source Framework for Phosphorylation-site Prediction BMC Bioinformatics. 2010 | Pubmed ID: 21210988 [Characterization and Comparison of the Doppler Compensation Acoustic Wave in Hipposideros Armiger] Dong Wu Xue Yan Jiu = Zoological Research / "Dong Wu Xue Yan Jiu" Bian Ji Wei Yuan Hui Bian Ji. Dec, 2010 | Pubmed ID: 21174358 Effector Prediction in Host-pathogen Interaction Based on a Markov Model of a Ubiquitous EPIYA Motif BMC Genomics. 2010 | Pubmed ID: 21143776 2K09 and Thereafter : the Coming Era of Integrative Bioinformatics, Systems Biology and Intelligent Computing for Functional Genomics and Personalized Medicine Research BMC Genomics. 2010 | Pubmed ID: 21143775 [An Open-label, Multicentric Clinical Trial to Evaluate the Efficacy and Impact on Bone Metabolism of Recombinant Human Tumor Necrosis Factor-α Receptor II IgG Fc Fusion Protein with Methotrexate in Active Rheumatoid Arthritis: 24-week Clinical and Radiographic Results from ReABLE Study] Zhonghua Yi Xue Za Zhi. Sep, 2010 | Pubmed ID: 21092476 [The Clinical Effect and Disquisition of Anterior Cervical Approach Surgery with Posterior Longitudinal Ligament Hook Pliers and Posterior Longitudinal Ligament Nip Pliers] Zhonghua Yi Xue Za Zhi. Sep, 2010 | Pubmed ID: 21092469 Whole Genome Co-expression Analysis of Soybean Cytochrome P450 Genes Identifies Nodulation-specific P450 Monooxygenases BMC Plant Biology. 2010 | Pubmed ID: 21062474 Genome-wide DNA Methylation Maps in Follicular Lymphoma Cells Determined by Methylation-enriched Bisulfite Sequencing PloS One. 2010 | Pubmed ID: 20927367 Root Hair Systems Biology Trends in Plant Science. Nov, 2010 | Pubmed ID: 20851035 Comparative Studies of the Pyrolytic and Kinetic Characteristics of Maize Straw and the Seaweed Ulva Pertusa PloS One. 2010 | Pubmed ID: 20844751 Identification of Transcription Factor's Targets Using Tissue-specific Transcriptomic Data in Arabidopsis Thaliana BMC Systems Biology. 2010 | Pubmed ID: 20840729 Genome-wide Functional Annotation by Integrating Multiple Microarray Datasets Using Meta-analysis International Journal of Data Mining and Bioinformatics. 2010 | Pubmed ID: 20815137 The Relationship Between Three Heat Shock Protein 70 Gene Polymorphisms and Susceptibility to Lung Cancer Clinical Chemistry and Laboratory Medicine : CCLM / FESCC. Nov, 2010 | Pubmed ID: 20704535 Musite, a Tool for Global Prediction of General and Kinase-specific Phosphorylation Sites Molecular & Cellular Proteomics : MCP. Dec, 2010 | Pubmed ID: 20702892 SNP Discovery by High-throughput Sequencing in Soybean BMC Genomics. 2010 | Pubmed ID: 20701770 [The Diagnostic Value of Anti-SSA Antibody in Primary Sjögren's Syndrome] Zhonghua Nei Ke Za Zhi [Chinese Journal of Internal Medicine]. May, 2010 | Pubmed ID: 20646416 [Study on Optimization Gradation of Substrates in Vertical Flow Constructed Wetlands] Huan Jing Ke Xue= Huanjing Kexue / [bian Ji, Zhongguo Ke Xue Yuan Huan Jing Ke Xue Wei Yuan Hui "Huan Jing Ke Xue" Bian Ji Wei Yuan Hui.]. May, 2010 | Pubmed ID: 20623856 Clinical Features and Prognosis in Adult-onset Still's Disease: a Study of 104 Cases Clinical Rheumatology. Sep, 2010 | Pubmed ID: 20549276 ProteinDBS V2.0: a Web Server for Global and Local Protein Structure Search Nucleic Acids Research. Jul, 2010 | Pubmed ID: 20538653 Identification of MiRNA from Porphyra Yezoensis by High-throughput Sequencing and Bioinformatics Analysis PloS One. 2010 | Pubmed ID: 20502668 SeqRate: Sequence-based Protein Folding Type Classification and Rates Prediction BMC Bioinformatics. 2010 | Pubmed ID: 20438647 Image Clustering Using Local Discriminant Models and Global Integration IEEE Transactions on Image Processing : a Publication of the IEEE Signal Processing Society. Oct, 2010 | Pubmed ID: 20423802 [Generation and Characterization of Monoclonal Antibody Against Human PIK3IP1] Xi Bao Yu Fen Zi Mian Yi Xue Za Zhi = Chinese Journal of Cellular and Molecular Immunology. May, 2010 | Pubmed ID: 20423653 User-assisted Ink-bleed Reduction IEEE Transactions on Image Processing : a Publication of the IEEE Signal Processing Society. Oct, 2010 | Pubmed ID: 20421185 An Integrated Transcriptome Atlas of the Crop Model Glycine Max, and Its Use in Comparative Analyses in Plants The Plant Journal : for Cell and Molecular Biology. Jul, 2010 | Pubmed ID: 20408999 PMirP: a Pre-microRNA Prediction Method Based on Structure-sequence Hybrid Features Artificial Intelligence in Medicine. Jun, 2010 | Pubmed ID: 20399081 Effects of Sediment Dredging on Water Quality and Zooplankton Community Structure in a Shallow of Eutrophic Lake Journal of Environmental Sciences (China). 2010 | Pubmed ID: 20397409 Purification and Biochemical Characterisation of a Novel Glutamate Decarboxylase from Rice Bran Journal of the Science of Food and Agriculture. Apr, 2010 | Pubmed ID: 20355143 Recombinant Human PDCD5 Sensitizes Chondrosarcomas to Cisplatin Chemotherapy in Vitro and in Vivo Apoptosis : an International Journal on Programmed Cell Death. Jul, 2010 | Pubmed ID: 20349137 Reformation of Medical Education in China Lancet. May, 2010 | Pubmed ID: 20347127 Investigating the Mechanism of Disease in the RP10 Form of Retinitis Pigmentosa Advances in Experimental Medicine and Biology. 2010 | Pubmed ID: 20238057 Genome Wide Exploration of the Origin and Evolution of Amino Acids BMC Evolutionary Biology. 2010 | Pubmed ID: 20230639 Flexible Manifold Embedding: a Framework for Semi-supervised and Unsupervised Dimension Reduction IEEE Transactions on Image Processing : a Publication of the IEEE Signal Processing Society. Jul, 2010 | Pubmed ID: 20215078 Agent-based Modeling of Endotoxin-induced Acute Inflammatory Response in Human Blood Leukocytes PloS One. 2010 | Pubmed ID: 20174629 Prediction of Novel MiRNAs and Associated Target Genes in Glycine Max BMC Bioinformatics. 2010 | Pubmed ID: 20122185 Systems Analysis of Seed Filling in Arabidopsis: Using General Linear Modeling to Assess Concordance of Transcript and Protein Expression Plant Physiology. Apr, 2010 | Pubmed ID: 20118269 SoyDB: a Knowledge Database of Soybean Transcription Factors BMC Plant Biology. 2010 | Pubmed ID: 20082720 Genome Sequence of the Palaeopolyploid Soybean Nature. Jan, 2010 | Pubmed ID: 20075913 Efficacy of Entecavir in Chronic Hepatitis B Patients with Mildly Elevated Alanine Aminotransferase and Biopsy-proven Histological Damage Hepatology (Baltimore, Md.). Apr, 2010 | Pubmed ID: 20044806 A New Unconventional Halogen Bond C-X...H-M Between HCCX (X = Cl and Br) and HMH (M = Be and Mg): an Ab Initio Study Journal of Computational Chemistry. Jun, 2010 | Pubmed ID: 20017125 Bioinformatics Methods for Protein Identification Using Peptide Mass Fingerprinting Methods in Molecular Biology (Clifton, N.J.). 2010 | Pubmed ID: 20013361 Aspirin Inhibits Proliferation of Gemcitabine-resistant Human Pancreatic Cancer Cells and Augments Gemcitabine-induced Cytotoxicity Acta Pharmacologica Sinica. Jan, 2010 | Pubmed ID: 19966835 MUFOLD: A New Solution for Protein 3D Structure Prediction Proteins. Apr, 2010 | Pubmed ID: 19927325 Anti-angiogenic Activity of Triptolide in Anaplastic Thyroid Carcinoma is Mediated by Targeting Vascular Endothelial and Tumor Cells Vascular Pharmacology. Jan-Feb, 2010 | Pubmed ID: 19854299 Using Pseudomonas Putida XylE Gene to Teach Molecular Cloning Techniques for Undergraduates Biochemistry and Molecular Biology Education : a Bimonthly Publication of the International Union of Biochemistry and Molecular Biology. Nov, 2009 | Pubmed ID: 21567768 Control of Iodine Deficiency Disorders Following 10-year Universal Salt Iodization in Hebei Province of China Biomedical and Environmental Sciences : BES. Dec, 2009 | Pubmed ID: 20337220 Comparison Between Endoluminal Ultrasonography and Spiral Computerized Tomography for the Preoperative Local Staging of Rectal Carcinoma Bioscience Trends. Apr, 2009 | Pubmed ID: 20103950 [Nitrogen Removal Under the Condition of Carbon Source Supplement in Integrated Vertical-flow Constructed Wetland] Huan Jing Ke Xue= Huanjing Kexue / [bian Ji, Zhongguo Ke Xue Yuan Huan Jing Ke Xue Wei Yuan Hui "Huan Jing Ke Xue" Bian Ji Wei Yuan Hui.]. Nov, 2009 | Pubmed ID: 20063744 Proprioception of Foot and Ankle Complex in Young Regular Practitioners of Ice Hockey, Ballet Dancing and Running Research in Sports Medicine (Print). 2009 | Pubmed ID: 19967600 Generating Triangulated Macromolecular Surfaces by Euclidean Distance Transform PloS One. 2009 | Pubmed ID: 19956577 Management of Lung Nodules Detected by Volume CT Scanning The New England Journal of Medicine. Dec, 2009 | Pubmed ID: 19955524 Mechanism of Glycan Receptor Recognition and Specificity Switch for Avian, Swine, and Human Adapted Influenza Virus Hemagglutinins: a Molecular Dynamics Perspective Journal of the American Chemical Society. Dec, 2009 | Pubmed ID: 19891427 Orphan Nuclear Receptor Nur77 is Required for the Differentiation of C6 Glioma Cells Induced by Cholera Toxin Acta Pharmacologica Sinica. Nov, 2009 | Pubmed ID: 19890361 Isotope Pattern Vector Based Tandem Mass Spectral Data Calibration for Improved Peptide and Protein Identification Rapid Communications in Mass Spectrometry : RCM. Nov, 2009 | Pubmed ID: 19813282 Large-scale Analysis of Putative Soybean Regulatory Gene Expression Identifies a Myb Gene Involved in Soybean Nodule Development Plant Physiology. Nov, 2009 | Pubmed ID: 19755542 Legume Transcription Factor Genes: What Makes Legumes So Special? Plant Physiology. Nov, 2009 | Pubmed ID: 19726573 Enhancing Bilinear Subspace Learning by Element Rearrangement IEEE Transactions on Pattern Analysis and Machine Intelligence. Oct, 2009 | Pubmed ID: 19696459 A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants Lecture Notes in Computer Science. 2009 | Pubmed ID: 19668600 Gas Sensors Based on Deposited Single-walled Carbon Nanotube Networks for DMMP Detection Nanotechnology. Aug, 2009 | Pubmed ID: 19652278 Proteome Analysis of a Single Zebrafish Embryo Using Three Different Digestion Strategies Coupled with Liquid Chromatography-tandem Mass Spectrometry Analytical Biochemistry. Nov, 2009 | Pubmed ID: 19643073 Comparative Study on Overexpression of HER2/neu and HER3 in Gastric Cancer World Journal of Surgery. Oct, 2009 | Pubmed ID: 19636613 Programmed Cell Death Protein 5 (PDCD5) is Phosphorylated by CK2 in Vitro and in 293T Cells Biochemical and Biophysical Research Communications. Sep, 2009 | Pubmed ID: 19616514 [Increasing Cardiopulmonary Bypass Flow Volume Improves Outcome of Patient with Carotid Stenosis Undergoing Coronary Artery Bypass Grafting] Zhonghua Wai Ke Za Zhi [Chinese Journal of Surgery]. Apr, 2009 | Pubmed ID: 19595034 Confidence Assessment for Protein Identification by Using Peptide-mass Fingerprinting Data Proteomics. Jun, 2009 | Pubmed ID: 19526559 Expression of Toll-like Receptor 9 in Peripheral Blood Mononuclear Cells from Patients with Different Hepatitis B and C Viral Loads Journal of Huazhong University of Science and Technology. Medical Sciences = Hua Zhong Ke Ji Da Xue Xue Bao. Yi Xue Ying De Wen Ban = Huazhong Keji Daxue Xuebao. Yixue Yingdewen Ban. Jun, 2009 | Pubmed ID: 19513613 Semi-supervised Bilinear Subspace Learning IEEE Transactions on Image Processing : a Publication of the IEEE Signal Processing Society. Jul, 2009 | Pubmed ID: 19447714 Knockdown of ERp57 Increases BiP/GRP78 Induction and Protects Against Hyperoxia and Tunicamycin-induced Apoptosis American Journal of Physiology. Lung Cellular and Molecular Physiology. Jul, 2009 | Pubmed ID: 19411306 Generation of Phaseolus Vulgaris ESTs and Investigation of Their Regulation Upon Uromyces Appendiculatus Infection BMC Plant Biology. 2009 | Pubmed ID: 19397807 Computational Methods for Protein Sequence Comparison and Search Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [et Al.]. Apr, 2009 | Pubmed ID: 19365790 Changes in Muscle Strength, Endurance, and Reaction of the Lower Extremities with Tai Chi Intervention Journal of Biomechanics. May, 2009 | Pubmed ID: 19356761 Distinct Glycan Topology for Avian and Human Sialopentasaccharide Receptor Analogues Upon Binding Different Hemagglutinins: a Molecular Dynamics Perspective Journal of Molecular Biology. Mar, 2009 | Pubmed ID: 19356594 Trajectory Tracking Control of Omnidirectional Wheeled Mobile Manipulators: Robust Neural Network-based Sliding Mode Approach IEEE Transactions on Systems, Man, and Cybernetics. Part B, Cybernetics : a Publication of the IEEE Systems, Man, and Cybernetics Society. Jun, 2009 | Pubmed ID: 19336336 PDCD5 Interacts with Tip60 and Functions As a Cooperator in Acetyltransferase Activity and DNA Damage-induced Apoptosis Neoplasia (New York, N.Y.). Apr, 2009 | Pubmed ID: 19308289 Characterizing Loop Dynamics and Ligand Recognition in Human- and Avian-type Influenza Neuraminidases Via Generalized Born Molecular Dynamics and End-point Free Energy Calculations Journal of the American Chemical Society. Apr, 2009 | Pubmed ID: 19296611 Computational Identification of Protein Methylation Sites Through Bi-profile Bayes Feature Extraction PloS One. 2009 | Pubmed ID: 19290060 Long-term Monitoring Shows Hepatitis B Virus Resistance to Entecavir in Nucleoside-naïve Patients is Rare Through 5 Years of Therapy Hepatology (Baltimore, Md.). May, 2009 | Pubmed ID: 19280622 System Analysis of an Arabidopsis Mutant Altered in De Novo Fatty Acid Synthesis Reveals Diverse Changes in Seed Composition and Metabolism Plant Physiology. May, 2009 | Pubmed ID: 19279196 Evolution Analysis of the Matrix (M) Protein Genes of 17 H9N2 Chicken Influenza Viruses Isolated in Northern China During 1998-2008 Virus Genes. Jun, 2009 | Pubmed ID: 19247825 ComPhy: Prokaryotic Composite Distance Phylogenies Inferred from Whole-genome Gene Sets BMC Bioinformatics. 2009 | Pubmed ID: 19208152 Novel Recombinant Fibrinogenase of Agkistrodon Acutus Venom Protects Against LPS-induced DIC Thrombosis Research. Apr, 2009 | Pubmed ID: 19070354 Photoaffinity Isolation and Identification of Proteins in Cancer Cell Extracts That Bind to Platinum-modified DNA Chembiochem : a European Journal of Chemical Biology. Jan, 2009 | Pubmed ID: 19053130 Heat Shock Protein 27 Protects Lung Epithelial Cells from Hyperoxia-induced Apoptotic Cell Death Pediatric Research. Mar, 2009 | Pubmed ID: 19047919 Establishment of a Protein Reference Map for Soybean Root Hair Cells Plant Physiology. Feb, 2009 | Pubmed ID: 19036831 Smooth or Attached Solid Indeterminate Nodules Detected at Baseline CT Screening in the NELSON Study: Cancer Risk During 1 Year of Follow-up Radiology. Jan, 2009 | Pubmed ID: 18984780 P3DB: a Plant Protein Phosphorylation Database Nucleic Acids Research. Jan, 2009 | Pubmed ID: 18931372 Role of Baseline Nodule Density and Changes in Density and Nodule Features in the Discrimination Between Benign and Malignant Solid Indeterminate Pulmonary Nodules European Journal of Radiology. Jun, 2009 | Pubmed ID: 18417311 L-Lysinium Trifluoro-acetate Acta Crystallographica. Section E, Structure Reports Online. 2008 | Pubmed ID: 21201423 An Integrated Probabilistic Approach for Gene Function Prediction Using Multiple Sources of High-throughput Data International Journal of Computational Biology and Drug Design. 2008 | Pubmed ID: 20054992 Virologic, Serologic, and Biochemical Outcomes Through 2 Years of Treatment with Entecavir and Lamivudine in Nucleoside-naïve Chinese Patients with Chronic Hepatitis B: a Randomized, Multicenter Study Hepatology International. Dec, 2008 | Pubmed ID: 19669324 Efficacy and Safety of Entecavir Compared to Lamivudine in Nucleoside-naïve Patients with Chronic Hepatitis B: a Randomized Double-blind Trial in China Hepatology International. Mar, 2008 | Pubmed ID: 19669291 Combining Sequence and Structural Profiles for Protein Solvent Accessibility Prediction Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 2008 | Pubmed ID: 19642280 [A Study on the Registration Method and Precision in Image Guided Surgery] Sheng Wu Yi Xue Gong Cheng Xue Za Zhi = Journal of Biomedical Engineering = Shengwu Yixue Gongchengxue Zazhi. Dec, 2008 | Pubmed ID: 19166185 IMP Dehydrogenase Type 1 Associates with Polyribosomes Translating Rhodopsin MRNA The Journal of Biological Chemistry. Dec, 2008 | Pubmed ID: 18974094 [Construction and Identification of the Eukaryotic Expression Vector PIRES2-EGFP-IL-1ra-Fcepsilon] Fen Zi Xi Bao Sheng Wu Xue Bao = Journal of Molecular Cell Biology / Zhongguo Xi Bao Sheng Wu Xue Xue Hui Zhu Ban. Aug, 2008 | Pubmed ID: 18959005 Face Recognition Using Spatially Constrained Earth Mover's Distance IEEE Transactions on Image Processing : a Publication of the IEEE Signal Processing Society. Nov, 2008 | Pubmed ID: 18854252 Direct Binding of GTP Cyclohydrolase and Tyrosine Hydroxylase: Regulatory Interactions Between Key Enzymes in Dopamine Biosynthesis The Journal of Biological Chemistry. Nov, 2008 | Pubmed ID: 18801743 Wanted: Unique Names for Unique Atom Positions. PDB-wide Analysis of Diastereotopic Atom Names of Small Molecules Containing Diphosphate BMC Bioinformatics. 2008 | Pubmed ID: 18793461 Video Event Recognition Using Kernel Methods with Multilevel Temporal Alignment IEEE Transactions on Pattern Analysis and Machine Intelligence. Nov, 2008 | Pubmed ID: 18787246 A Link Between SIN1 (MAPKAP1) and Poly(rC) Binding Protein 2 (PCBP2) in Counteracting Environmental Stress Proceedings of the National Academy of Sciences of the United States of America. Aug, 2008 | Pubmed ID: 18687895 [Studies on Absorption Mechanism of Loganin in Intestines of Rats] Zhongguo Zhong Yao Za Zhi = Zhongguo Zhongyao Zazhi = China Journal of Chinese Materia Medica. May, 2008 | Pubmed ID: 18652356 Effect of Nodule Characteristics on Variability of Semiautomated Volume Measurements in Pulmonary Nodules Detected in a Lung Cancer Screening Program Radiology. Aug, 2008 | Pubmed ID: 18641255 A Critical Assessment of Mus Musculus Gene Function Prediction Using Integrated Genomic Evidence Genome Biology. 2008 | Pubmed ID: 18613946 Swimming Training Can Affect Intrinsic Calcium Current Characteristics in Rat Myocardium European Journal of Applied Physiology. Oct, 2008 | Pubmed ID: 18594852 Sequence Diversity of Bacillus Thuringiensis Flagellin (H Antigen) Protein at the Intra-H Serotype Level Applied and Environmental Microbiology. Sep, 2008 | Pubmed ID: 18586969 PRIMEGENS-v2: Genome-wide Primer Design for Analyzing DNA Methylation Patterns of CpG Islands Bioinformatics (Oxford, England). Sep, 2008 | Pubmed ID: 18579568 Targeted Screening of SiRNA Directed HBV Polymerase Gene for Effective Inhibition of HBV Expression Journal of Huazhong University of Science and Technology. Medical Sciences = Hua Zhong Ke Ji Da Xue Xue Bao. Yi Xue Ying De Wen Ban = Huazhong Keji Daxue Xuebao. Yixue Yingdewen Ban. Jun, 2008 | Pubmed ID: 18563320 Ensemble-based Virtual Screening Reveals Potential Novel Antiviral Compounds for Avian Influenza Neuraminidase Journal of Medicinal Chemistry. Jul, 2008 | Pubmed ID: 18558668 Effects of 16-week Tai Chi Intervention on Postural Stability and Proprioception of Knee and Ankle in Older People Age and Ageing. Sep, 2008 | Pubmed ID: 18541612 Tai Chi Exercise and Proprioception Behavior in Old People Medicine and Sport Science. 2008 | Pubmed ID: 18487888 Tai Chi Exercise and Muscle Strength and Endurance in Older People Medicine and Sport Science. 2008 | Pubmed ID: 18487883 K+ACh Channel Activation with Carbachol Increases Atrial ANP Release Life Sciences. May, 2008 | Pubmed ID: 18440028 Transcription Profiling of Soybean Nodulation by Bradyrhizobium Japonicum Molecular Plant-microbe Interactions : MPMI. May, 2008 | Pubmed ID: 18393623 A Lectin Receptor-like Kinase is Required for Pollen Development in Arabidopsis Plant Molecular Biology. Jul, 2008 | Pubmed ID: 18392777 GeneFAS: A Tool for Prediction of Gene Function Using Multiple Sources of Data Methods in Molecular Biology (Clifton, N.J.). 2008 | Pubmed ID: 18370116 Effects of Two Novel Nucleoside Analogues on Different Hepatitis B Virus Promoters World Journal of Gastroenterology : WJG. Mar, 2008 | Pubmed ID: 18350620 Discriminant Locally Linear Embedding with High-order Tensor Data IEEE Transactions on Systems, Man, and Cybernetics. Part B, Cybernetics : a Publication of the IEEE Systems, Man, and Cybernetics Society. Apr, 2008 | Pubmed ID: 18348919 Chronic Hypoxia and Rat Lung Development: Analysis by Morphometry and Directed Microarray Pediatric Research. Jul, 2008 | Pubmed ID: 18344904 [Establishment of an I-SceI System and Its Application to Introduce DNA Double-strand Break into Human Hepatoma Cell Line HepG2] Zhonghua Gan Zang Bing Za Zhi = Zhonghua Ganzangbing Zazhi = Chinese Journal of Hepatology. Feb, 2008 | Pubmed ID: 18304424 Proprioception of Ankle and Knee Joints in Obese Boys and Nonobese Boys Medical Science Monitor : International Medical Journal of Experimental and Clinical Research. Mar, 2008 | Pubmed ID: 18301356 Retinal Isoforms of Inosine 5'-monophosphate Dehydrogenase Type 1 Are Poor Nucleic Acid Binding Proteins Archives of Biochemistry and Biophysics. Apr, 2008 | Pubmed ID: 18295591 Tetraphenylphosphonium Bis(2-thioxo-1,3-dithiole-4,5-dithiolato)aurate(III) Acetone Solvate and Ethyltriphenylphosphonium Bis(2-thioxo-1,3-dithiole-4,5-dithiolato)aurate(III) Acta Crystallographica. Section C, Crystal Structure Communications. Jan, 2008 | Pubmed ID: 18216438 Epidermal Growth Factor-like Domain 7 Protects Endothelial Cells from Hyperoxia-induced Cell Death American Journal of Physiology. Lung Cellular and Molecular Physiology. Jan, 2008 | Pubmed ID: 17934064 Identification of Molecular Markers for the Oncogenic Differentiation of Hepatocellular Carcinoma Experimental & Molecular Medicine. Oct, 2007 | Pubmed ID: 18059140 Marginal Fisher Analysis and Its Variants for Human Gait Recognition and Content- Based Image Retrieval IEEE Transactions on Image Processing : a Publication of the IEEE Signal Processing Society. Nov, 2007 | Pubmed ID: 17990757 Genome-scale Probe and Primer Design with PRIMEGENS Methods in Molecular Biology (Clifton, N.J.). 2007 | Pubmed ID: 17951795 Rank-one Projections with Adaptive Margins for Face Recognition IEEE Transactions on Systems, Man, and Cybernetics. Part B, Cybernetics : a Publication of the IEEE Systems, Man, and Cybernetics Society. Oct, 2007 | Pubmed ID: 17926705 Phylogenetic Analysis Using Complete Signature Information of Whole Genomes and Clustered Neighbour-Joining Method International Journal of Bioinformatics Research and Applications. 2006 | Pubmed ID: 18048163 A Fast Algorithm for Low-resolution Protein Structure Prediction Conference Proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference. 2006 | Pubmed ID: 17946724 Design and Implementation of Probability-based Scoring Function for Peptide Mass Fingerprinting Protein Identification Conference Proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference. 2006 | Pubmed ID: 17946250 Bioinformatics Analysis for Interactive Proteomics Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [et Al.]. Dec, 2005 | Pubmed ID: 18429286 Cellular Function Prediction and Biological Pathway Discovery in Arabidopsis Thaliana Using Microarray Data International Journal of Bioinformatics Research and Applications. 2005 | Pubmed ID: 18048140 Protein Databases on the Internet Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [et Al.]. Nov, 2004 | Pubmed ID: 18429255 Protein Databases on the Internet Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [et Al.]. Nov, 2004 | Pubmed ID: 18265344 Enantioseparation of 15 Organic Phosphonate Esters on the Cellulose Tris(3,5-dimethylphenyl Carbamate) Chiral Stationary Phase by HPLC Talanta. Aug, 2003 | Pubmed ID: 18969145 Um protocolo para Computer-Based Estrutura de Proteínas e de Previsão de Função Ambrish Roy1,2, Dong Xu1, Jonathan Poisson1, Yang Zhang1,2 1Center for Computational Medicine and Bioinformatics, University of Michigan, 2Center for Bioinformatics and Department of Molecular Bioscience, University of Kansas JoVE 3259 Biology
Um protocolo para Computer-Based Estrutura de Proteínas e de Previsão de Função Ambrish Roy1,2, Dong Xu1, Jonathan Poisson1, Yang Zhang1,2 1Center for Computational Medicine and Bioinformatics, University of Michigan, 2Center for Bioinformatics and Department of Molecular Bioscience, University of Kansas JoVE 3259 Biology