Harm van Bakel

Publications

• Influenza A Variants with Reduced Susceptibility to Baloxavir Isolated from Japanese Patients Are Fit and Transmit Through Respiratory Droplets
  Nature Microbiology. Nov, 2019  |   Pubmed ID: 31768027
• Blurred Molecular Epidemiological Lines Between the Two Dominant Methicillin-Resistant Clones
  Open Forum Infectious Diseases. Sep, 2019  |   Pubmed ID: 31660395
• A Complete Genome Screening Program of Clinical Methicillin-Resistant Staphylococcus Aureus Isolates Identifies the Origin and Progression of a Neonatal Intensive Care Unit Outbreak
  Journal of Clinical Microbiology. Dec, 2019  |   Pubmed ID: 31578260
• Influenza Virus Polymerase Mutation Stabilizes a Foreign Gene Inserted into the Virus Genome by Enhancing the Transcription/Replication Efficiency of the Modified Segment
  MBio. Oct, 2019  |   Pubmed ID: 31575766
• Circulation of Low Pathogenic Avian Influenza (LPAI) Viruses in Wild Birds and Poultry in the Netherlands, 2006-2016
  Scientific Reports. Sep, 2019  |   Pubmed ID: 31548582
• Isolation of Highly Pathogenic H5N1 Influenza Viruses in 2009-2013 in Vietnam
  Frontiers in Microbiology. 2019  |   Pubmed ID: 31293548
• The Purine Biosynthesis Regulator PurR Moonlights As a Virulence Regulator in
  Proceedings of the National Academy of Sciences of the United States of America. Jul, 2019  |   Pubmed ID: 31217288
• Mandibular Dysmorphology Due to Abnormal Embryonic Osteogenesis in FGFR2-related Craniosynostosis Mice
  Disease Models & Mechanisms. 05, 2019  |   Pubmed ID: 31064775
• A Humanized MDCK Cell Line for the Efficient Isolation and Propagation of Human Influenza Viruses
  Nature Microbiology. 08, 2019  |   Pubmed ID: 31036910
• Mce3R Stress-Resistance Pathway Is Vulnerable to Small-Molecule Targeting That Improves Tuberculosis Drug Activities
  ACS Infectious Diseases. Jul, 2019  |   Pubmed ID: 31012313
• Sequential Evolution of Virulence and Resistance During Clonal Spread of Community-acquired Methicillin-resistant
  Proceedings of the National Academy of Sciences of the United States of America. 01, 2019  |   Pubmed ID: 30635416
• A Physical and Genetic Map of Identifies Extensive Rearrangements at the Loci
  Genome Research. 01, 2019  |   Pubmed ID: 30409771
• Transcriptome-wide Isoform-level Dysregulation in ASD, Schizophrenia, and Bipolar Disorder
  Science (New York, N.Y.). 12, 2018  |   Pubmed ID: 30545856
• Evidence of a Fixed Internal Gene Constellation in Influenza A Viruses Isolated from Wild Birds in Argentina (2006-2016)
  Emerging Microbes & Infections. Nov, 2018  |   Pubmed ID: 30482896
• Midface and Upper Airway Dysgenesis in FGFR2-related Craniosynostosis Involves Multiple Tissue-specific and Cell Cycle Effects
  Development (Cambridge, England). 10, 2018  |   Pubmed ID: 30228104
• Influenza Virus Infection Causes Global RNAPII Termination Defects
  Nature Structural & Molecular Biology. Sep, 2018  |   Pubmed ID: 30177761
• Genome Plasticity of -Defective Staphylococcus Aureus During Clinical Infection
  Infection and Immunity. 10, 2018  |   Pubmed ID: 30061376
• Reemergence of H3N8 Equine Influenza A Virus in Chile, 2018
  Transboundary and Emerging Diseases. Dec, 2018  |   Pubmed ID: 30054993
• Corrigendum to "Community-Acquired Cavitary Pneumonia Linked to Use of a Home Humidifier"
  Case Reports in Infectious Diseases. 2018  |   Pubmed ID: 29971174
• Multiple Incursions and Recurrent Epidemic Fade-Out of H3N2 Canine Influenza A Virus in the United States
  Journal of Virology. 08, 2018  |   Pubmed ID: 29875234
• Avian Influenza Viruses in Wild Birds: Virus Evolution in a Multihost Ecosystem
  Journal of Virology. 08, 2018  |   Pubmed ID: 29769347
• Genetic Basis of Emerging Vancomycin, Linezolid, and Daptomycin Heteroresistance in a Case of Persistent Enterococcus Faecium Bacteremia
  Antimicrobial Agents and Chemotherapy. 04, 2018  |   Pubmed ID: 29339387
• Community-Acquired Cavitary Pneumonia Linked to Use of a Home Humidifier
  Case Reports in Infectious Diseases. 2017  |   Pubmed ID: 29527364
• Application of Genome Wide Association and Genomic Prediction for Improvement of Cacao Productivity and Resistance to Black and Frosty Pod Diseases
  Frontiers in Plant Science. 2017  |   Pubmed ID: 29184558
• Multi-platform 'Omics Analysis of Human Ebola Virus Disease Pathogenesis
  Cell Host & Microbe. Dec, 2017  |   Pubmed ID: 29154144
• Estimating Local Costs Associated With Clostridium Difficile Infection Using Machine Learning and Electronic Medical Records
  Infection Control and Hospital Epidemiology. 12, 2017  |   Pubmed ID: 29103378
• The RNA Exosome Syncs IAV-RNAPII Transcription to Promote Viral Ribogenesis and Infectivity
  Cell. May, 2017  |   Pubmed ID: 28475896
• Evidence of Intercontinental Spread and Uncommon Variants of Low-Pathogenicity Avian Influenza Viruses in Ducks Overwintering in Guatemala
  MSphere. Mar-Apr, 2017  |   Pubmed ID: 28405632
• Genomic Confirmation of Vancomycin-resistant Enterococcus Transmission from Deceased Donor to Liver Transplant Recipient
  PloS One. 2017  |   Pubmed ID: 28301471
• Avian Influenza Virus H5 Strain with North American and Eurasian Lineage Genes in an Antarctic Penguin
  Emerging Infectious Diseases. 12, 2016  |   Pubmed ID: 27662612
• Origins of the 2009 H1N1 Influenza Pandemic in Swine in Mexico
  ELife. 06, 2016  |   Pubmed ID: 27350259
• The FaceBase Consortium: a Comprehensive Resource for Craniofacial Researchers
  Development (Cambridge, England). 07, 2016  |   Pubmed ID: 27287806
• Topoisomerase 1 Inhibition Suppresses Inflammatory Genes and Protects from Death by Inflammation
  Science (New York, N.Y.). May, 2016  |   Pubmed ID: 27127234
• Targeting Viral Proteostasis Limits Influenza Virus, HIV, and Dengue Virus Infection
  Immunity. Jan, 2016  |   Pubmed ID: 26789921
• The PsychENCODE Project
  Nature Neuroscience. Dec, 2015  |   Pubmed ID: 26605881
• Whole-genome Sequencing Identifies Emergence of a Quinolone Resistance Mutation in a Case of Stenotrophomonas Maltophilia Bacteremia
  Antimicrobial Agents and Chemotherapy. Nov, 2015  |   Pubmed ID: 26324280
• Senataxin Suppresses the Antiviral Transcriptional Response and Controls Viral Biogenesis
  Nature Immunology. May, 2015  |   Pubmed ID: 25822250
• High Capsid-genome Correlation Facilitates Creation of AAV Libraries for Directed Evolution
  Molecular Therapy : the Journal of the American Society of Gene Therapy. Apr, 2015  |   Pubmed ID: 25586687
• BCL11B Expression in Intramembranous Osteogenesis During Murine Craniofacial Suture Development
  Gene Expression Patterns : GEP. Jan, 2015  |   Pubmed ID: 25511173
• Prothymosin α Variants Isolated from CD8+ T Cells and Cervicovaginal Fluid Suppress HIV-1 Replication Through Type I Interferon Induction
  The Journal of Infectious Diseases. May, 2015  |   Pubmed ID: 25404520
• Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
  Cell. Sep, 2014  |   Pubmed ID: 25215497
• Interplay of Host Microbiota, Genetic Perturbations, and Inflammation Promotes Local Development of Intestinal Neoplasms in Mice
  The Journal of Experimental Medicine. Mar, 2014  |   Pubmed ID: 24590763
• A Compendium of Nucleosome and Transcript Profiles Reveals Determinants of Chromatin Architecture and Transcription
  PLoS Genetics. May, 2013  |   Pubmed ID: 23658529