James Whelan Department of Animal, Plant and Soil Science, AgriBio Building La Trobe University Biography Publications Institution JoVE Articles James Whelan has not added a biography. If you are James Whelan and would like to personalize this page please email our Author Liaison for assistance. Publications Linking Mitochondrial and Chloroplast Retrograde Signalling in Plants Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. Jun, 2020 | Pubmed ID: 32362265 Cyclic Peptides in Seed of Are Ribosomally Synthesized Journal of Natural Products. 04, 2020 | Pubmed ID: 32239926 Mitochondrial Signalling is Critical for Acclimation and Adaptation to Flooding in Arabidopsis Thaliana The Plant Journal : for Cell and Molecular Biology. Jul, 2020 | Pubmed ID: 32064696 Molecular and Physiological Responses During Thermal Acclimation of Leaf Photosynthesis and Respiration in Rice Plant, Cell & Environment. 03, 2020 | Pubmed ID: 31860752 Transcriptional and Biochemical Analyses of Gibberellin Expression and Content in Germinated Barley Grain Journal of Experimental Botany. Mar, 2020 | Pubmed ID: 31819970 Temporal Tissue-specific Regulation of Transcriptomes During Barley (Hordeum Vulgare) Seed Germination The Plant Journal : for Cell and Molecular Biology. 02, 2020 | Pubmed ID: 31628689 A Transcription Factor OsbHLH156 Regulates Strategy II Iron Acquisition Through Localising IRO2 to the Nucleus in Rice The New Phytologist. 02, 2020 | Pubmed ID: 31574173 Direct Comparison of Arabidopsis Gene Expression Reveals Different Responses to Melatonin Versus Auxin BMC Plant Biology. Dec, 2019 | Pubmed ID: 31856719 A Mitochondrial LYR Protein Is Required for Complex I Assembly Plant Physiology. 12, 2019 | Pubmed ID: 31601645 SPX4 Acts on PHR1-Dependent and -Independent Regulation of Shoot Phosphorus Status in Arabidopsis Plant Physiology. 09, 2019 | Pubmed ID: 31262954 The Soybean Sugar Transporter GmSWEET15 Mediates Sucrose Export from Endosperm to Early Embryo Plant Physiology. 08, 2019 | Pubmed ID: 31221732 Arabidopsis DGD1 SUPPRESSOR1 Is a Subunit of the Mitochondrial Contact Site and Cristae Organizing System and Affects Mitochondrial Biogenesis The Plant Cell. 08, 2019 | Pubmed ID: 31118221 An Ancient Peptide Family Buried Within Vicilin Precursors ACS Chemical Biology. 05, 2019 | Pubmed ID: 30973714 ANAC017 Coordinates Organellar Functions and Stress Responses by Reprogramming Retrograde Signaling Plant Physiology. 05, 2019 | Pubmed ID: 30872424 Composition of Mitochondrial Complex I During the Critical Node of Seed Aging in Oryza Sativa Journal of Plant Physiology. May, 2019 | Pubmed ID: 30840921 Dual and Dynamic Intracellular Localization of Arabidopsis Thaliana SnRK1.1 Journal of Experimental Botany. 04, 2019 | Pubmed ID: 30753728 Interplay Between Jasmonic Acid, Phosphate Signaling and the Regulation of Glycerolipid Homeostasis in Arabidopsis Plant & Cell Physiology. Jun, 2019 | Pubmed ID: 30753691 Identification and Characterisation of Hypomethylated DNA Loci Controlling Quantitative Resistance in ELife. 01, 2019 | Pubmed ID: 30608232 Mitochondrial Function Modulates Touch Signalling in Arabidopsis Thaliana The Plant Journal : for Cell and Molecular Biology. 02, 2019 | Pubmed ID: 30537160 A Family of Small, Cyclic Peptides Buried in Preproalbumin Since the Eocene Epoch Plant Direct. Feb, 2018 | Pubmed ID: 30417166 Alternative Splicing Plays a Critical Role in Maintaining Mineral Nutrient Homeostasis in Rice () The Plant Cell. 10, 2018 | Pubmed ID: 30254029 Accumulation of Endogenous Peptides Triggers a Pathogen Stress Response in Arabidopsis Thaliana The Plant Journal : for Cell and Molecular Biology. 11, 2018 | Pubmed ID: 30242930 AgriSeqDB: an Online RNA-Seq Database for Functional Studies of Agriculturally Relevant Plant Species BMC Plant Biology. Sep, 2018 | Pubmed ID: 30231853 Alternative Oxidase Is Positive for Plant Performance Trends in Plant Science. 07, 2018 | Pubmed ID: 29665989 Stress Responsive Mitochondrial Proteins in Arabidopsis Thaliana Free Radical Biology & Medicine. 07, 2018 | Pubmed ID: 29555593 The Phosphate Fast-Responsive Genes and Affect Phosphocholine and Phosphoethanolamine Content Plant Physiology. 04, 2018 | Pubmed ID: 29475899 Alternative Oxidase Isoforms Are Differentially Activated by Tricarboxylic Acid Cycle Intermediates Plant Physiology. Dec, 2017 | Pubmed ID: 29208641 Extensive Transcriptomic and Epigenomic Remodelling Occurs During Arabidopsis Thaliana Germination Genome Biology. Sep, 2017 | Pubmed ID: 28911330 Analysis of Posttranslational Activation of Alternative Oxidase Isoforms Plant Physiology. Aug, 2017 | Pubmed ID: 28596420 Isolation of Tissues and Preservation of RNA from Intact, Germinated Barley Grain The Plant Journal : for Cell and Molecular Biology. Aug, 2017 | Pubmed ID: 28509349 Root Cell-Specific Regulators of Phosphate-Dependent Growth Plant Physiology. Jul, 2017 | Pubmed ID: 28465462 Nutrient Stress-induced Chromatin Changes in Plants Current Opinion in Plant Biology. Oct, 2017 | Pubmed ID: 28441589 Molecular Interaction Between PHO2 and GIGANTEA Reveals a New Crosstalk Between Flowering Time and Phosphate Homeostasis in Oryza Sativa Plant, Cell & Environment. Aug, 2017 | Pubmed ID: 28337762 Stepwise Evolution of a Buried Inhibitor Peptide over 45 My Molecular Biology and Evolution. Jun, 2017 | Pubmed ID: 28333296 Evidence for Ancient Origins of Bowman-Birk Inhibitors from Selaginella Moellendorffii The Plant Cell. Mar, 2017 | Pubmed ID: 28298518 Community Recommendations on Terminology and Procedures Used in Flooding and Low Oxygen Stress Research The New Phytologist. Jun, 2017 | Pubmed ID: 28277605 OsNLA1, a RING-type Ubiquitin Ligase, Maintains Phosphate Homeostasis in Oryza Sativa Via Degradation of Phosphate Transporters The Plant Journal : for Cell and Molecular Biology. Jun, 2017 | Pubmed ID: 28229491 The Transcription Factor MYB29 Is a Regulator of ALTERNATIVE OXIDASE1a Plant Physiology. 03, 2017 | Pubmed ID: 28167700 Proteomic and Carbonylation Profile Analysis at the Critical Node of Seed Ageing in Oryza Sativa Scientific Reports. Jan, 2017 | Pubmed ID: 28094349 Two H-Type Thioredoxins Interact with the E2 Ubiquitin Conjugase PHO2 to Fine-Tune Phosphate Homeostasis in Rice Plant Physiology. Jan, 2017 | Pubmed ID: 27895204 Dynamic and Rapid Changes in the Transcriptome and Epigenome During Germination and in Developing Rice (Oryza Sativa) Coleoptiles Under Anoxia and Re-oxygenation The Plant Journal : for Cell and Molecular Biology. Feb, 2017 | Pubmed ID: 27859855 A Multi-step Peptidolytic Cascade for Amino Acid Recovery in Chloroplasts Nature Chemical Biology. Jan, 2017 | Pubmed ID: 27820795 Characterization of a Novel β-barrel Protein (AtOM47) from the Mitochondrial Outer Membrane of Arabidopsis Thaliana Journal of Experimental Botany. Nov, 2016 | Pubmed ID: 27811077 Plant-Specific Preprotein and Amino Acid Transporter Proteins Are Required for TRNA Import into Mitochondria Plant Physiology. Dec, 2016 | Pubmed ID: 27789739 A Transcriptomic Signature of Mouse Liver Progenitor Cells Stem Cells International. 2016 | Pubmed ID: 27777588 Dissecting the Metabolic Role of Mitochondria During Developmental Leaf Senescence Plant Physiology. Dec, 2016 | Pubmed ID: 27744300 Mitochondrial Defects Confer Tolerance Against Cellulose Deficiency The Plant Cell. Aug, 2016 | Pubmed ID: 27543091 Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases Plant Physiology. Jul, 2016 | Pubmed ID: 27208304 Comprehensive Mitochondrial Metabolic Shift During the Critical Node of Seed Ageing in Rice PloS One. 2016 | Pubmed ID: 27124767 Inactivation of Mitochondrial Complex I Induces the Expression of a Twin Cysteine Protein That Targets and Affects Cytosolic, Chloroplastidic and Mitochondrial Function Molecular Plant. May, 2016 | Pubmed ID: 26829715 Interaction Between Hormonal and Mitochondrial Signalling During Growth, Development and in Plant Defence Responses Plant, Cell & Environment. May, 2016 | Pubmed ID: 26763171 Rice SPX-Major Facility Superfamily3, a Vacuolar Phosphate Efflux Transporter, Is Involved in Maintaining Phosphate Homeostasis in Rice Plant Physiology. Dec, 2015 | Pubmed ID: 26424157 RNA-Seq Analysis Identifies Key Genes Associated with Haustorial Development in the Root Hemiparasite Santalum Album Frontiers in Plant Science. 2015 | Pubmed ID: 26388878 The Design and Structure of Outer Membrane Receptors from Peroxisomes, Mitochondria, and Chloroplasts Structure (London, England : 1993). Oct, 2015 | Pubmed ID: 26365798 Phosphorylation and Dephosphorylation of the Presequence of Precursor MULTIPLE ORGANELLAR RNA EDITING FACTOR3 During Import into Mitochondria from Arabidopsis Plant Physiology. Oct, 2015 | Pubmed ID: 26304849 Stress Induced Gene Expression Drives Transient DNA Methylation Changes at Adjacent Repetitive Elements ELife. Jul, 2015 | Pubmed ID: 26196146 Mechanisms of Growth and Patterns of Gene Expression in Oxygen-deprived Rice Coleoptiles The Plant Journal : for Cell and Molecular Biology. Apr, 2015 | Pubmed ID: 25650041 MPIC: a Mitochondrial Protein Import Components Database for Plant and Non-plant Species Plant & Cell Physiology. Jan, 2015 | Pubmed ID: 25435547 Decreasing Electron Flux Through the Cytochrome And/or Alternative Respiratory Pathways Triggers Common and Distinct Cellular Responses Dependent on Growth Conditions Plant Physiology. Jan, 2015 | Pubmed ID: 25378695 Next Generation Sequencing and De Novo Transcriptomics to Study Gene Evolution Plant Methods. 2014 | Pubmed ID: 25364374 Protein Import into Plant Mitochondria: Signals, Machinery, Processing, and Regulation Journal of Experimental Botany. Dec, 2014 | Pubmed ID: 25324401 The Mitochondrial Protein Import Component, TRANSLOCASE OF THE INNER MEMBRANE17-1, Plays a Role in Defining the Timing of Germination in Arabidopsis Plant Physiology. Nov, 2014 | Pubmed ID: 25253887 The Mitochondrial Outer Membrane AAA ATPase AtOM66 Affects Cell Death and Pathogen Resistance in Arabidopsis Thaliana The Plant Journal : for Cell and Molecular Biology. Nov, 2014 | Pubmed ID: 25227923 Mutation in Xyloglucan 6-xylosytransferase Results in Abnormal Root Hair Development in Oryza Sativa Journal of Experimental Botany. Aug, 2014 | Pubmed ID: 24834920 A Functional Antagonistic Relationship Between Auxin and Mitochondrial Retrograde Signaling Regulates Alternative Oxidase1a Expression in Arabidopsis Plant Physiology. May, 2014 | Pubmed ID: 24820025 Mitochondrial Biogenesis in Plants During Seed Germination Mitochondrion. Nov, 2014 | Pubmed ID: 24727594 Anterograde and Retrograde Regulation of Nuclear Genes Encoding Mitochondrial Proteins During Growth, Development, and Stress Molecular Plant. Jul, 2014 | Pubmed ID: 24711293 RNA-seq Analysis Identifies an Intricate Regulatory Network Controlling Cluster Root Development in White Lupin BMC Genomics. Mar, 2014 | Pubmed ID: 24666749 Evidence for Interactions Between the Mitochondrial Import Apparatus and Respiratory Chain Complexes Via Tim21-like Proteins in Arabidopsis Frontiers in Plant Science. 2014 | Pubmed ID: 24653731 Toward Deciphering the Genome-wide Transcriptional Responses of Rice to Phosphate Starvation and Recovery Plant Signaling & Behavior. 2014 | Pubmed ID: 24614023 Interaction Between Plastid and Mitochondrial Retrograde Signalling Pathways During Changes to Plastid Redox Status Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. Apr, 2014 | Pubmed ID: 24591717 The Plant Mitochondrial Protein Import Apparatus - the Differences Make It Interesting Biochimica Et Biophysica Acta. Apr, 2014 | Pubmed ID: 24080405 Coordinating Metabolite Changes with Our Perception of Plant Abiotic Stress Responses: Emerging Views Revealed by Integrative-omic Analyses Metabolites. Sep, 2013 | Pubmed ID: 24958149 Ligand Recognition by the TPR Domain of the Import Factor Toc64 from Arabidopsis Thaliana PloS One. 2013 | Pubmed ID: 24391770 Spatio-temporal Transcript Profiling of Rice Roots and Shoots in Response to Phosphate Starvation and Recovery The Plant Cell. Nov, 2013 | Pubmed ID: 24249833 Global Transcriptome Analysis of AtPAP2--overexpressing Arabidopsis Thaliana with Elevated ATP BMC Genomics. Nov, 2013 | Pubmed ID: 24180234 The Membrane-bound NAC Transcription Factor ANAC013 Functions in Mitochondrial Retrograde Regulation of the Oxidative Stress Response in Arabidopsis The Plant Cell. Sep, 2013 | Pubmed ID: 24045019 A Membrane-Bound NAC Transcription Factor, ANAC017, Mediates Mitochondrial Retrograde Signaling in Arabidopsis The Plant Cell. Sep, 2013 | Pubmed ID: 24045017 Organellar Oligopeptidase (OOP) Provides a Complementary Pathway for Targeting Peptide Degradation in Mitochondria and Chloroplasts Proceedings of the National Academy of Sciences of the United States of America. Oct, 2013 | Pubmed ID: 24043784 Microdissection laser RNA-Sequenciamento para Análise de Expressão Genética Espacial e Temporal-Específica do Tecido em Plantas Lim Chee Liew1,2, Yan Wang1,2, Marta Peirats-Llobet1, Oliver Berkowitz1,2,3, James Whelan1,2,3, Mathew G. Lewsey1,3 1Department of Animal, Plant and Soil Science, AgriBio Building, La Trobe University, 2Australian Research Council Centre of Excellence in Plant Energy Biology, La Trobe University, 3Australian Research Council Research Hub for Medicinal Agriculture, AgriBio Building, La Trobe University JoVE 61517 Biology Isolamento e medições respiratória de mitocôndrias de Arabidopsis thaliana Wenhui Lyu1, Jennifer Selinski1, Lu Li1, David A. Day2, Monika W. Murcha3, James Whelan1, Yan Wang1 1ARC Centre of Excellence in Plant Energy Biology, Department of Animal, Plant and Soil Science, School of Life Science, La Trobe University, 2School of Biological Sciences, Flinders University, 3ARC Centre of Excellence in Plant Energy Biology, University of Western Australia JoVE 56627 Biochemistry
Microdissection laser RNA-Sequenciamento para Análise de Expressão Genética Espacial e Temporal-Específica do Tecido em Plantas Lim Chee Liew1,2, Yan Wang1,2, Marta Peirats-Llobet1, Oliver Berkowitz1,2,3, James Whelan1,2,3, Mathew G. Lewsey1,3 1Department of Animal, Plant and Soil Science, AgriBio Building, La Trobe University, 2Australian Research Council Centre of Excellence in Plant Energy Biology, La Trobe University, 3Australian Research Council Research Hub for Medicinal Agriculture, AgriBio Building, La Trobe University JoVE 61517 Biology
Isolamento e medições respiratória de mitocôndrias de Arabidopsis thaliana Wenhui Lyu1, Jennifer Selinski1, Lu Li1, David A. Day2, Monika W. Murcha3, James Whelan1, Yan Wang1 1ARC Centre of Excellence in Plant Energy Biology, Department of Animal, Plant and Soil Science, School of Life Science, La Trobe University, 2School of Biological Sciences, Flinders University, 3ARC Centre of Excellence in Plant Energy Biology, University of Western Australia JoVE 56627 Biochemistry
