Job Dekker

Publications

• Multiscale Reorganization of the Genome Following DNA Damage Facilitates Chromosome Translocations Via Nuclear Actin Polymerization
  Nature Structural & Molecular Biology. Jan, 2023  |   Pubmed ID: 36564591
• Diverse Silent Chromatin States Modulate Genome Compartmentalization and Loop Extrusion Barriers
  Nature Structural & Molecular Biology. Jan, 2023  |   Pubmed ID: 36550219
• A Cohesin Traffic Pattern Genetically Linked to Gene Regulation
  Nature Structural & Molecular Biology. Dec, 2022  |   Pubmed ID: 36482254
• Regulation of the Mitotic Chromosome Folding Machines
  The Biochemical Journal. Oct, 2022  |   Pubmed ID: 36268993
• CTCF-CTCF Loops and Intra-TAD Interactions Show Differential Dependence on Cohesin Ring Integrity
  Nature Cell Biology. Oct, 2022  |   Pubmed ID: 36202971
• Nutritional Control Regulates Symbiont Proliferation and Life History in Coral-dinoflagellate Symbiosis
  BMC Biology. May, 2022  |   Pubmed ID: 35549698
• Author Correction: Expanded Encyclopaedias of DNA Elements in the Human and Mouse Genomes
  Nature. May, 2022  |   Pubmed ID: 35474001
• Loops, Topologically Associating Domains, Compartments, and Territories Are Elastic and Robust to Dramatic Nuclear Volume Swelling
  Scientific Reports. Mar, 2022  |   Pubmed ID: 35304523
• Spatial Organization of Transcribed Eukaryotic Genes
  Nature Cell Biology. Mar, 2022  |   Pubmed ID: 35177821
• Mechanisms of Chromosome Folding and Nuclear Organization: Their Interplay and Open Questions
  Cold Spring Harbor Perspectives in Biology. Jul, 2022  |   Pubmed ID: 34518339
• Inner Nuclear Protein Matrin-3 Coordinates Cell Differentiation by Stabilizing Chromatin Architecture
  Nature Communications. Oct, 2021  |   Pubmed ID: 34716321
• Symbiodinium Microadriaticum (coral Microalgal Endosymbiont)
  Trends in Genetics : TIG. Nov, 2021  |   Pubmed ID: 34518054
• Systematic Evaluation of Chromosome Conformation Capture Assays
  Nature Methods. Sep, 2021  |   Pubmed ID: 34480151
• Linker Histone H1.8 Inhibits Chromatin Binding of Condensins and DNA Topoisomerase II to Tune Chromosome Length and Individualization
  ELife. Aug, 2021  |   Pubmed ID: 34406118
• Hi-C 3.0: Improved Protocol for Genome-Wide Chromosome Conformation Capture
  Current Protocols. Jul, 2021  |   Pubmed ID: 34286910
• Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation
  Genome Biology and Evolution. Jun, 2021  |   Pubmed ID: 33964136
• Genetic and Spatial Organization of the Unusual Chromosomes of the Dinoflagellate Symbiodinium Microadriaticum
  Nature Genetics. May, 2021  |   Pubmed ID: 33927399
• Liquid Chromatin Hi-C Characterizes Compartment-dependent Chromatin Interaction Dynamics
  Nature Genetics. Mar, 2021  |   Pubmed ID: 33574602
• Cohesin Mutations Alter DNA Damage Repair and Chromatin Structure and Create Therapeutic Vulnerabilities in MDS/AML
  JCI Insight. Feb, 2021  |   Pubmed ID: 33351783
• Is Involved in Corneal Stroma Development by Regulating Neural Crest Migration
  International Journal of Molecular Sciences. Oct, 2020  |   Pubmed ID: 33096935
• Detecting Chromatin Interactions Between and Along Sister Chromatids with SisterC
  Nature Methods. Oct, 2020  |   Pubmed ID: 32968250
• Clustering of Strong Replicators Associated with Active Promoters is Sufficient to Establish an Early-replicating Domain
  The EMBO Journal. Nov, 2020  |   Pubmed ID: 32935369
• Multi-contact 3C Reveals That the Human Genome During Interphase is Largely Not Entangled
  Nature Structural & Molecular Biology. Dec, 2020  |   Pubmed ID: 32929283
• Large Domains of Heterochromatin Direct the Formation of Short Mitotic Chromosome Loops
  ELife. Sep, 2020  |   Pubmed ID: 32915140
• Expanded Encyclopaedias of DNA Elements in the Human and Mouse Genomes
  Nature. Jul, 2020  |   Pubmed ID: 32728249
• Mechanisms and Functions of Chromosome Compartmentalization
  Trends in Biochemical Sciences. May, 2020  |   Pubmed ID: 32311333
• Ultrastructural Details of Mammalian Chromosome Architecture
  Molecular Cell. May, 2020  |   Pubmed ID: 32213324
• SPEN Integrates Transcriptional and Epigenetic Control of X-inactivation
  Nature. 02, 2020  |   Pubmed ID: 32025035
• Transcriptional Silencers in Drosophila Serve a Dual Role As Transcriptional Enhancers in Alternate Cellular Contexts
  Molecular Cell. Jan, 2020  |   Pubmed ID: 31704182
• A Chromosome Folding Intermediate at the Condensin-to-cohesin Transition During Telophase
  Nature Cell Biology. Nov, 2019  |   Pubmed ID: 31685986
• Highly Structured Homolog Pairing Reflects Functional Organization of the Drosophila Genome
  Nature Communications. Oct, 2019  |   Pubmed ID: 31582763
• The Genome-wide Multi-layered Architecture of Chromosome Pairing in Early Drosophila Embryos
  Nature Communications. Oct, 2019  |   Pubmed ID: 31582744
• Cohesin Members Stag1 and Stag2 Display Distinct Roles in Chromatin Accessibility and Topological Control of HSC Self-Renewal and Differentiation
  Cell Stem Cell. Nov, 2019  |   Pubmed ID: 31495782
• Publisher Correction: Heterochromatin Drives Compartmentalization of Inverted and Conventional Nuclei
  Nature. Aug, 2019  |   Pubmed ID: 31375785
• Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance Between Replication Timing and Chromatin Compartment
  Stem Cell Reports. Jul, 2019  |   Pubmed ID: 31231024
• Heterochromatin Drives Compartmentalization of Inverted and Conventional Nuclei
  Nature. Jun, 2019  |   Pubmed ID: 31168090
• Measuring the Reproducibility and Quality of Hi-C Data
  Genome Biology. Mar, 2019  |   Pubmed ID: 30890172
• Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization
  Cell. Mar, 2019  |   Pubmed ID: 30799036
• CTCF Sites Display Cell Cycle-dependent Dynamics in Factor Binding and Nucleosome Positioning
  Genome Research. Feb, 2019  |   Pubmed ID: 30655336
• The Non-canonical SMC Protein SmcHD1 Antagonises TAD Formation and Compartmentalisation on the Inactive X Chromosome
  Nature Communications. Jan, 2019  |   Pubmed ID: 30604745
• Higher-Order Organization Principles of Pre-translational MRNPs
  Molecular Cell. Nov, 2018  |   Pubmed ID: 30415953
• Single-allele Chromatin Interactions Identify Regulatory Hubs in Dynamic Compartmentalized Domains
  Nature Genetics. Dec, 2018  |   Pubmed ID: 30374068
• Integrative Detection and Analysis of Structural Variation in Cancer Genomes
  Nature Genetics. Oct, 2018  |   Pubmed ID: 30202056
• CBFβ-SMMHC Inhibition Triggers Apoptosis by Disrupting MYC Chromatin Dynamics in Acute Myeloid Leukemia
  Cell. Jun, 2018  |   Pubmed ID: 29958106
• C-BERST: Defining Subnuclear Proteomic Landscapes at Genomic Elements with DCas9-APEX2
  Nature Methods. Jun, 2018  |   Pubmed ID: 29735996
• A Pathway for Mitotic Chromosome Formation
  Science (New York, N.Y.). Feb, 2018  |   Pubmed ID: 29348367
• The Cluster is a Dynamic and Resilient TAD Boundary Controlling the Segregation of Antagonistic Regulatory Landscapes
  Genes & Development. Nov, 2017  |   Pubmed ID: 29273679
• The 4D Nucleome Project
  Nature. 09, 2017  |   Pubmed ID: 28905911
• SMC Complexes Differentially Compact Mitotic Chromosomes According to Genomic Context
  Nature Cell Biology. Sep, 2017  |   Pubmed ID: 28825700
• Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization
  Cell. May, 2017  |   Pubmed ID: 28525758
• Shelterin Components Mediate Genome Reorganization in Response to Replication Stress
  Proceedings of the National Academy of Sciences of the United States of America. May, 2017  |   Pubmed ID: 28490498
• Hi-C 2.0: An Optimized Hi-C Procedure for High-resolution Genome-wide Mapping of Chromosome Conformation
  Methods (San Diego, Calif.). Jul, 2017  |   Pubmed ID: 28435001
• Epigenetic Characteristics of the Mitotic Chromosome in 1D and 3D
  Critical Reviews in Biochemistry and Molecular Biology. Apr, 2017  |   Pubmed ID: 28228067
• Polycomb Repressive Complex 1 Generates Discrete Compacted Domains That Change During Differentiation
  Molecular Cell. Feb, 2017  |   Pubmed ID: 28157505
• CTCF-mediated Topological Boundaries During Development Foster Appropriate Gene Regulation
  Genes & Development. 12, 2016  |   Pubmed ID: 28087711
• Mapping the 3D Genome: Aiming for Consilience
  Nature Reviews. Molecular Cell Biology. Nov, 2016  |   Pubmed ID: 27869158
• Crystal Structure of the DNA Binding Domain of the Transcription Factor T-bet Suggests Simultaneous Recognition of Distant Genome Sites
  Proceedings of the National Academy of Sciences of the United States of America. Oct, 2016  |   Pubmed ID: 27791029
• RUNX1 Contributes to Higher-order Chromatin Organization and Gene Regulation in Breast Cancer Cells
  Biochimica Et Biophysica Acta. Nov, 2016  |   Pubmed ID: 27514584
• Structural Organization of the Inactive X Chromosome in the Mouse
  Nature. Jul, 2016  |   Pubmed ID: 27437574
• SMARCA4 Regulates Gene Expression and Higher-order Chromatin Structure in Proliferating Mammary Epithelial Cells
  Genome Research. Sep, 2016  |   Pubmed ID: 27435934
• Genetics and Genomics of Longitudinal Lung Function Patterns in Individuals with Asthma
  American Journal of Respiratory and Critical Care Medicine. Dec, 2016  |   Pubmed ID: 27367781
• Local Genome Topology Can Exhibit an Incompletely Rewired 3D-Folding State During Somatic Cell Reprogramming
  Cell Stem Cell. May, 2016  |   Pubmed ID: 27152443
• TAD Disruption As Oncogenic Driver
  Current Opinion in Genetics & Development. Feb, 2016  |   Pubmed ID: 27111891
• The 3D Genome As Moderator of Chromosomal Communication
  Cell. Mar, 2016  |   Pubmed ID: 26967279
• Activation of Proto-oncogenes by Disruption of Chromosome Neighborhoods
  Science (New York, N.Y.). Mar, 2016  |   Pubmed ID: 26940867
• Extremely Long-Range Chromatin Loops Link Topological Domains to Facilitate a Diverse Antibody Repertoire
  Cell Reports. Feb, 2016  |   Pubmed ID: 26804913
• Invariant TAD Boundaries Constrain Cell-Type-Specific Looping Interactions Between Promoters and Distal Elements Around the CFTR Locus
  American Journal of Human Genetics. Jan, 2016  |   Pubmed ID: 26748519
• The Conformation of Yeast Chromosome III Is Mating Type Dependent and Controlled by the Recombination Enhancer
  Cell Reports. Dec, 2015  |   Pubmed ID: 26655901
• HiC-Pro: an Optimized and Flexible Pipeline for Hi-C Data Processing
  Genome Biology. 2015  |   Pubmed ID: 26619908
• High-Affinity Sites Form an Interaction Network to Facilitate Spreading of the MSL Complex Across the X Chromosome in Drosophila
  Molecular Cell. Oct, 2015  |   Pubmed ID: 26431028
• Long-Range Chromatin Interactions
  Cold Spring Harbor Perspectives in Biology. Oct, 2015  |   Pubmed ID: 26430217
• Chromatin Interaction Analysis Reveals Changes in Small Chromosome and Telomere Clustering Between Epithelial and Breast Cancer Cells
  Genome Biology. Sep, 2015  |   Pubmed ID: 26415882
• Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells
  Cell. Sep, 2015  |   Pubmed ID: 26365489
• Structural and Functional Diversity of Topologically Associating Domains
  FEBS Letters. Oct, 2015  |   Pubmed ID: 26348399
• Condensin Promotes the Juxtaposition of DNA Flanking Its Loading Site in Bacillus Subtilis
  Genes & Development. Aug, 2015  |   Pubmed ID: 26253537
• The Yeast Genome Undergoes Significant Topological Reorganization in Quiescence
  Nucleic Acids Research. Sep, 2015  |   Pubmed ID: 26202961
• Measuring Chromatin Structure in Budding Yeast
  Cold Spring Harbor Protocols. Jul, 2015  |   Pubmed ID: 26134912
• Hi-C in Budding Yeast
  Cold Spring Harbor Protocols. Jul, 2015  |   Pubmed ID: 26134906
• Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C
  Cell. Jul, 2015  |   Pubmed ID: 26119342
• Chromosome Conformation Capture Carbon Copy (5C) in Budding Yeast
  Cold Spring Harbor Protocols. Jun, 2015  |   Pubmed ID: 26034306
• Randomized Ligation Control for Chromosome Conformation Capture
  Cold Spring Harbor Protocols. Jun, 2015  |   Pubmed ID: 26034305
• Chromosome Conformation Capture (3C) in Budding Yeast
  Cold Spring Harbor Protocols. Jun, 2015  |   Pubmed ID: 26034304
• Condensin-driven Remodelling of X Chromosome Topology During Dosage Compensation
  Nature. Jul, 2015  |   Pubmed ID: 26030525
• Spatial Enhancer Clustering and Regulation of Enhancer-proximal Genes by Cohesin
  Genome Research. Apr, 2015  |   Pubmed ID: 25677180
• The Hitchhiker's Guide to Hi-C Analysis: Practical Guidelines
  Methods (San Diego, Calif.). Jan, 2015  |   Pubmed ID: 25448293
• Two Ways to Fold the Genome During the Cell Cycle: Insights Obtained with Chromosome Conformation Capture
  Epigenetics & Chromatin. 2014  |   Pubmed ID: 25435919
• Cohesin-dependent Globules and Heterochromatin Shape 3D Genome Architecture in S. Pombe
  Nature. Dec, 2014  |   Pubmed ID: 25307058
• Reply to Brunet and Doolittle: Both Selected Effect and Causal Role Elements Can Influence Human Biology and Disease
  Proceedings of the National Academy of Sciences of the United States of America. Aug, 2014  |   Pubmed ID: 25275169
• Predictive Polymer Modeling Reveals Coupled Fluctuations in Chromosome Conformation and Transcription
  Cell. May, 2014  |   Pubmed ID: 24813616
• Defining Functional DNA Elements in the Human Genome
  Proceedings of the National Academy of Sciences of the United States of America. Apr, 2014  |   Pubmed ID: 24753594
• High-throughput Genome Scaffolding from in Vivo DNA Interaction Frequency
  Nature Biotechnology. Dec, 2013  |   Pubmed ID: 24270850
• Flexible Ordering of Antibody Class Switch and V(D)J Joining During B-cell Ontogeny
  Genes & Development. Nov, 2013  |   Pubmed ID: 24240234
• Organization of the Mitotic Chromosome
  Science (New York, N.Y.). Nov, 2013  |   Pubmed ID: 24200812
• Cohesin-based Chromatin Interactions Enable Regulated Gene Expression Within Preexisting Architectural Compartments
  Genome Research. Dec, 2013  |   Pubmed ID: 24002784
• Architectural Protein Subclasses Shape 3D Organization of Genomes During Lineage Commitment
  Cell. Jun, 2013  |   Pubmed ID: 23706625
• Exploring the Three-dimensional Organization of Genomes: Interpreting Chromatin Interaction Data
  Nature Reviews. Genetics. Jun, 2013  |   Pubmed ID: 23657480
• Nuclear Biology: What's Been Most Surprising?
  Cell. Mar, 2013  |   Pubmed ID: 23616995
• The Hierarchy of the 3D Genome
  Molecular Cell. Mar, 2013  |   Pubmed ID: 23473598
• Correlated Alterations in Genome Organization, Histone Methylation, and DNA-lamin A/C Interactions in Hutchinson-Gilford Progeria Syndrome
  Genome Research. Feb, 2013  |   Pubmed ID: 23152449
• 3C-based Technologies to Study the Shape of the Genome
  Methods (San Diego, Calif.). Nov, 2012  |   Pubmed ID: 23199640
• From Cells to Chromatin: Capturing Snapshots of Genome Organization with 5C Technology
  Methods (San Diego, Calif.). Nov, 2012  |   Pubmed ID: 23137922
• The Long-range Interaction Landscape of Gene Promoters
  Nature. Sep, 2012  |   Pubmed ID: 22955621
• The Accessible Chromatin Landscape of the Human Genome
  Nature. Sep, 2012  |   Pubmed ID: 22955617
• Iterative Correction of Hi-C Data Reveals Hallmarks of Chromosome Organization
  Nature Methods. Oct, 2012  |   Pubmed ID: 22941365
• HiTC: Exploration of High-throughput 'C' Experiments
  Bioinformatics (Oxford, England). Nov, 2012  |   Pubmed ID: 22923296
• Analysis of Long-range Chromatin Interactions Using Chromosome Conformation Capture
  Methods (San Diego, Calif.). Nov, 2012  |   Pubmed ID: 22903059
• An Encyclopedia of Mouse DNA Elements (Mouse ENCODE)
  Genome Biology. Aug, 2012  |   Pubmed ID: 22889292
• Hi-C: a Comprehensive Technique to Capture the Conformation of Genomes
  Methods (San Diego, Calif.). Nov, 2012  |   Pubmed ID: 22652625
• CTCF and Cohesin Help Neurons Raise Their Self-awareness
  Proceedings of the National Academy of Sciences of the United States of America. Jun, 2012  |   Pubmed ID: 22615386
• MORC Family ATPases Required for Heterochromatin Condensation and Gene Silencing
  Science (New York, N.Y.). Jun, 2012  |   Pubmed ID: 22555433
• The Context of Gene Expression Regulation
  F1000 Biology Reports. 2012  |   Pubmed ID: 22500194
• Spatial Partitioning of the Regulatory Landscape of the X-inactivation Centre
  Nature. May, 2012  |   Pubmed ID: 22495304
• Spatial Organization of the Mouse Genome and Its Role in Recurrent Chromosomal Translocations
  Cell. Mar, 2012  |   Pubmed ID: 22341456
• Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells
  PloS One. 2012  |   Pubmed ID: 22238572
• THE STRUCTURE AND FUNCTION OF CHROMATIN AND CHROMOSOMES
  Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2012  |   Pubmed ID: 22174298
• Enhanced Yeast One-hybrid Assays for High-throughput Gene-centered Regulatory Network Mapping
  Nature Methods. Dec, 2011  |   Pubmed ID: 22037705
• Yeast One-hybrid Assays for Gene-centered Human Gene Regulatory Network Mapping
  Nature Methods. Dec, 2011  |   Pubmed ID: 22037702
• The Three-dimensional Architecture of a Bacterial Genome and Its Alteration by Genetic Perturbation
  Molecular Cell. Oct, 2011  |   Pubmed ID: 22017872
• Translocation Mapping Exposes the Risky Lifestyle of B Cells
  Cell. Sep, 2011  |   Pubmed ID: 21962501
• Chromatin Globules: a Common Motif of Higher Order Chromosome Structure?
  Current Opinion in Cell Biology. Jun, 2011  |   Pubmed ID: 21489772
• A Long Noncoding RNA Maintains Active Chromatin to Coordinate Homeotic Gene Expression
  Nature. Apr, 2011  |   Pubmed ID: 21423168
• The Three-dimensional Folding of the α-globin Gene Domain Reveals Formation of Chromatin Globules
  Nature Structural & Molecular Biology. Jan, 2011  |   Pubmed ID: 21131981
• Sister Cohesion and Structural Axis Components Mediate Homolog Bias of Meiotic Recombination
  Cell. Dec, 2010  |   Pubmed ID: 21145459
• Genomics Tools for Unraveling Chromosome Architecture
  Nature Biotechnology. Oct, 2010  |   Pubmed ID: 20944601
• Mediator and Cohesin Connect Gene Expression and Chromatin Architecture
  Nature. Sep, 2010  |   Pubmed ID: 20720539
• Chemical Genetic Strategy Identifies Histone Deacetylase 1 (HDAC1) and HDAC2 As Therapeutic Targets in Sickle Cell Disease
  Proceedings of the National Academy of Sciences of the United States of America. Jul, 2010  |   Pubmed ID: 20616024
• Integrating One-dimensional and Three-dimensional Maps of Genomes
  Journal of Cell Science. Jun, 2010  |   Pubmed ID: 20519580
• Cell-type-specific Long-range Looping Interactions Identify Distant Regulatory Elements of the CFTR Gene
  Nucleic Acids Research. Jul, 2010  |   Pubmed ID: 20360044
• Comprehensive Mapping of Long-range Interactions Reveals Folding Principles of the Human Genome
  Science (New York, N.Y.). Oct, 2009  |   Pubmed ID: 19815776
• My5C: Web Tools for Chromosome Conformation Capture Studies
  Nature Methods. Oct, 2009  |   Pubmed ID: 19789528
• Determining Spatial Chromatin Organization of Large Genomic Regions Using 5C Technology
  Methods in Molecular Biology (Clifton, N.J.). 2009  |   Pubmed ID: 19588094
• Disease-causing 7.4 Kb Cis-regulatory Deletion Disrupting Conserved Non-coding Sequences and Their Interaction with the FOXL2 Promotor: Implications for Mutation Screening
  PLoS Genetics. Jun, 2009  |   Pubmed ID: 19543368
• Gene Dates, Parties and Galas. Symposium on Chromatin Dynamics and Higher Order Organization
  EMBO Reports. Jul, 2009  |   Pubmed ID: 19525922
• Yeast Silent Mating Type Loci Form Heterochromatic Clusters Through Silencer Protein-dependent Long-range Interactions
  PLoS Genetics. May, 2009  |   Pubmed ID: 19424429
• Mechanisms That Regulate Localization of a DNA Double-strand Break to the Nuclear Periphery
  Genes & Development. Apr, 2009  |   Pubmed ID: 19390086
• Mapping Cis- and Trans- Chromatin Interaction Networks Using Chromosome Conformation Capture (3C)
  Methods in Molecular Biology (Clifton, N.J.). 2009  |   Pubmed ID: 18951182
• Long-range Chromosomal Interactions and Gene Regulation
  Molecular BioSystems. Nov, 2008  |   Pubmed ID: 18931780
• Mapping in Vivo Chromatin Interactions in Yeast Suggests an Extended Chromatin Fiber with Regional Variation in Compaction
  The Journal of Biological Chemistry. Dec, 2008  |   Pubmed ID: 18930918
• Gene Regulation in the Third Dimension
  Science (New York, N.Y.). Mar, 2008  |   Pubmed ID: 18369139
• A Mechanism for Ikaros Regulation of Human Globin Gene Switching
  British Journal of Haematology. May, 2008  |   Pubmed ID: 18318763
• Chromosome Conformation Capture Carbon Copy Technology
  Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [et Al.]. Oct, 2007  |   Pubmed ID: 18265398
• Polycomb Response Elements Mediate the Formation of Chromosome Higher-order Structures in the Bithorax Complex
  Nature Cell Biology. Oct, 2007  |   Pubmed ID: 17828248
• Quantitative Analysis of Chromosome Conformation Capture Assays (3C-qPCR)
  Nature Protocols. 2007  |   Pubmed ID: 17641637
• GC- and AT-rich Chromatin Domains Differ in Conformation and Histone Modification Status and Are Differentially Modulated by Rpd3p
  Genome Biology. 2007  |   Pubmed ID: 17577398
• Identification and Analysis of Functional Elements in 1% of the Human Genome by the ENCODE Pilot Project
  Nature. Jun, 2007  |   Pubmed ID: 17571346
• Mapping Networks of Physical Interactions Between Genomic Elements Using 5C Technology
  Nature Protocols. 2007  |   Pubmed ID: 17446898
• Mapping Chromatin Interactions by Chromosome Conformation Capture
  Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [et Al.]. May, 2006  |   Pubmed ID: 18265379
• Chromosome Conformation Capture Carbon Copy (5C): a Massively Parallel Solution for Mapping Interactions Between Genomic Elements
  Genome Research. Oct, 2006  |   Pubmed ID: 16954542
• The Active FMR1 Promoter is Associated with a Large Domain of Altered Chromatin Conformation with Embedded Local Histone Modifications
  Proceedings of the National Academy of Sciences of the United States of America. Aug, 2006  |   Pubmed ID: 16891414
• The Three 'C' S of Chromosome Conformation Capture: Controls, Controls, Controls
  Nature Methods. Jan, 2006  |   Pubmed ID: 16369547
• Proximity Among Distant Regulatory Elements at the Beta-globin Locus Requires GATA-1 and FOG-1
  Molecular Cell. Feb, 2005  |   Pubmed ID: 15694345
• A Mechanical Basis for Chromosome Function
  Proceedings of the National Academy of Sciences of the United States of America. Aug, 2004  |   Pubmed ID: 15299144
• A Closer Look at Long-range Chromosomal Interactions
  Trends in Biochemical Sciences. Jun, 2003  |   Pubmed ID: 12826398
• Capturing Chromosome Conformation
  Science (New York, N.Y.). Feb, 2002  |   Pubmed ID: 11847345