Raluca Gordan

Publications

• Unexpected Implications of STAT3 Acetylation Revealed by Genetic Encoding of Acetyl-lysine
  Biochimica Et Biophysica Acta. General Subjects. Sep, 2019  |   Pubmed ID: 31170499
• QBiC-Pred: Quantitative Predictions of Transcription Factor Binding Changes Due to Sequence Variants
  Nucleic Acids Research. Jul, 2019  |   Pubmed ID: 31114870
• DNA Sequence Context Controls the Binding and Processivity of the T7 DNA Primase
  IScience. Apr, 2018  |   Pubmed ID: 30428370
• Genetic Variation Determines VEGF-A Plasma Levels in Cancer Patients
  Scientific Reports. 11, 2018  |   Pubmed ID: 30397360
• The Vitamin D Receptor Gene As a Determinant of Survival in Pancreatic Cancer Patients: Genomic Analysis and Experimental Validation
  PloS One. 2018  |   Pubmed ID: 30107003
• Toward Deciphering the Mechanistic Role of Variations in the Rep1 Repeat Site in the Transcription Regulation of SNCA Gene
  Neurogenetics. Aug, 2018  |   Pubmed ID: 29730780
• Divergence in DNA Specificity Among Paralogous Transcription Factors Contributes to Their Differential In Vivo Binding
  Cell Systems. Apr, 2018  |   Pubmed ID: 29605182
• Incomplete MyoD-induced Transdifferentiation is Associated with Chromatin Remodeling Deficiencies
  Nucleic Acids Research. Nov, 2017  |   Pubmed ID: 28977539
• Inkjet-printed Point-of-care Immunoassay on a Nanoscale Polymer Brush Enables Subpicomolar Detection of Analytes in Blood
  Proceedings of the National Academy of Sciences of the United States of America. 08, 2017  |   Pubmed ID: 28784765
• Quantifying the Impact of Non-coding Variants on Transcription Factor-DNA Binding
  Research in Computational Molecular Biology : ... Annual International Conference, RECOMB ... : Proceedings. RECOMB (Conference : 2005-). May, 2017  |   Pubmed ID: 28691125
• Whole-Genome and Epigenomic Landscapes of Etiologically Distinct Subtypes of Cholangiocarcinoma
  Cancer Discovery. 10, 2017  |   Pubmed ID: 28667006
• Expression Level is a Key Determinant of E2F1-mediated Cell Fate
  Cell Death and Differentiation. 04, 2017  |   Pubmed ID: 28211871
• Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade Through Opposing Activities of Both Activators and Repressors
  Developmental Cell. 12, 2016  |   Pubmed ID: 27923776
• Transcription Factor-DNA Binding Motifs in Saccharomyces Cerevisiae: Tools and Resources
  Cold Spring Harbor Protocols. 11, 2016  |   Pubmed ID: 27803259
• Punctuated Evolution and Transitional Hybrid Network in an Ancestral Cell Cycle of Fungi
  ELife. 05, 2016  |   Pubmed ID: 27162172
• HDAC Inhibitors Cause Site-specific Chromatin Remodeling at PU.1-bound Enhancers in K562 Cells
  Epigenetics & Chromatin. 2016  |   Pubmed ID: 27087856
• Nonconsensus Protein Binding to Repetitive DNA Sequence Elements Significantly Affects Eukaryotic Genomes
  PLoS Computational Biology. Aug, 2015  |   Pubmed ID: 26285121
• Quantitative Modeling of Transcription Factor Binding Specificities Using DNA Shape
  Proceedings of the National Academy of Sciences of the United States of America. Apr, 2015  |   Pubmed ID: 25775564
• Human-chimpanzee Differences in a FZD8 Enhancer Alter Cell-cycle Dynamics in the Developing Neocortex
  Current Biology : CB. Mar, 2015  |   Pubmed ID: 25702574
• Protein-DNA Binding in the Absence of Specific Base-pair Recognition
  Proceedings of the National Academy of Sciences of the United States of America. Dec, 2014  |   Pubmed ID: 25313048
• Sequence Specificity Incompletely Defines the Genome-wide Occupancy of Myc
  Genome Biology. 2014  |   Pubmed ID: 25287278
• Absence of a Simple Code: How Transcription Factors Read the Genome
  Trends in Biochemical Sciences. Sep, 2014  |   Pubmed ID: 25129887
• COUGER--co-factors Associated with Uniquely-bound Genomic Regions
  Nucleic Acids Research. Jul, 2014  |   Pubmed ID: 24861628
• Protein-DNA Binding: Complexities and Multi-protein Codes
  Nucleic Acids Research. Feb, 2014  |   Pubmed ID: 24243859
• TFBSshape: a Motif Database for DNA Shape Features of Transcription Factor Binding Sites
  Nucleic Acids Research. Jan, 2014  |   Pubmed ID: 24214955
• Stability Selection for Regression-based Models of Transcription Factor-DNA Binding Specificity
  Bioinformatics (Oxford, England). Jul, 2013  |   Pubmed ID: 23812975
• Genomic Regions Flanking E-box Binding Sites Influence DNA Binding Specificity of BHLH Transcription Factors Through DNA Shape
  Cell Reports. Apr, 2013  |   Pubmed ID: 23562153
• Identification of Cell Cycle-regulated, Putative Hyphal Genes in Candida Albicans
  Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2012  |   Pubmed ID: 22174285
• Identification of Tat-SF1 Cellular Targets by Exon Array Analysis Reveals Dual Roles in Transcription and Splicing
  RNA (New York, N.Y.). Apr, 2011  |   Pubmed ID: 21282347
• Finding Regulatory DNA Motifs Using Alignment-free Evolutionary Conservation Information
  Nucleic Acids Research. Apr, 2010  |   Pubmed ID: 20047961
• Drosophila ORC Localizes to Open Chromatin and Marks Sites of Cohesin Complex Loading
  Genome Research. Feb, 2010  |   Pubmed ID: 19996087
• Distinguishing Direct Versus Indirect Transcription Factor-DNA Interactions
  Genome Research. Nov, 2009  |   Pubmed ID: 19652015
• Using DNA Duplex Stability Information for Transcription Factor Binding Site Discovery
  Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2008  |   Pubmed ID: 18229707
• A Nucleosome-guided Map of Transcription Factor Binding Sites in Yeast
  PLoS Computational Biology. Nov, 2007  |   Pubmed ID: 17997593
• Informative Priors Based on Transcription Factor Structural Class Improve De Novo Motif Discovery
  Bioinformatics (Oxford, England). Jul, 2006  |   Pubmed ID: 16873497