Rama Ranganathan

Publications

• The Context-Dependence of Mutations: A Linkage of Formalisms
  PLoS Computational Biology. Jun, 2016  |   Pubmed ID: 27337695
• Origins of Allostery and Evolvability in Proteins: A Case Study
  Cell. Jun, 2016  |   Pubmed ID: 27321669
• Evolution-Based Functional Decomposition of Proteins
  PLoS Computational Biology. Jun, 2016  |   Pubmed ID: 27254668
• Paediatric Retinoblastoma in India: Evidence from the National Cancer Registry Programme
  Asian Pacific Journal of Cancer Prevention : APJCP. 2015  |   Pubmed ID: 26028071
• Evolvability As a Function of Purifying Selection in TEM-1 β-lactamase
  Cell. Feb, 2015  |   Pubmed ID: 25723163
• A Novel Allosteric Mechanism in the Cysteine Peptidase Cathepsin K Discovered by Computational Methods
  Nature Communications. 2014  |   Pubmed ID: 24518821
• Systems-level Characterization of the Kernel Mechanism of the Cyanobacterial Circadian Oscillator
  Bio Systems. Mar, 2014  |   Pubmed ID: 24444761
• Evolution-based Design of Proteins
  Methods in Enzymology. 2013  |   Pubmed ID: 23422432
• The Spatial Architecture of Protein Function and Adaptation
  Nature. Nov, 2012  |   Pubmed ID: 23041932
• Quantifying the Rhythm of KaiB-C Interaction for in Vitro Cyanobacterial Circadian Clock
  PloS One. 2012  |   Pubmed ID: 22900029
• XPD Lys751Gln Increases the Risk of Breast Cancer
  Oncology Letters. Jan, 2011  |   Pubmed ID: 22870145
• Hot Spots for Allosteric Regulation on Protein Surfaces
  Cell. Dec, 2011  |   Pubmed ID: 22196731
• Prognostic Factors in Patients with Node-negative Gastric Cancer: an Indian Experience
  World Journal of Surgical Oncology. 2011  |   Pubmed ID: 21554745
• An Interdomain Sector Mediating Allostery in Hsp70 Molecular Chaperones
  Molecular Systems Biology. Sep, 2010  |   Pubmed ID: 20865007
• Cure Models for Estimating Hospital-based Breast Cancer Survival
  Asian Pacific Journal of Cancer Prevention : APJCP. 2010  |   Pubmed ID: 20843121
• Autophagy: Snapshot of the Network
  Nature. Jul, 2010  |   Pubmed ID: 20596005
• Protein Sectors: Evolutionary Units of Three-dimensional Structure
  Cell. Aug, 2009  |   Pubmed ID: 19703402
• CYP17 (T34C), CYP19 (Trp39Arg), and FGFR2 (C906T) Polymorphisms and the Risk of Breast Cancer in South Indian Women
  Asian Pacific Journal of Cancer Prevention : APJCP. Jan-Mar, 2009  |   Pubmed ID: 19469636
• Surface Sites for Engineering Allosteric Control in Proteins
  Science (New York, N.Y.). Oct, 2008  |   Pubmed ID: 18927392
• Lack of Active Follow-up of Cancer Patients in Chennai, India: Implications for Population-based Survival Estimates
  Bulletin of the World Health Organization. Jul, 2008  |   Pubmed ID: 18670662
• Systems Analysis of the Single Photon Response in Invertebrate Photoreceptors
  Proceedings of the National Academy of Sciences of the United States of America. Jul, 2008  |   Pubmed ID: 18653755
• Childhood Cancers in Chennai, India, 1990-2001: Incidence and Survival
  International Journal of Cancer. Jun, 2008  |   Pubmed ID: 18324630
• TGFbeta1 (Leu10Pro), P53 (Arg72Pro) Can Predict for Increased Risk for Breast Cancer in South Indian Women and TGFbeta1 Pro (Leu10Pro) Allele Predicts Response to Neo-adjuvant Chemo-radiotherapy
  Breast Cancer Research and Treatment. Nov, 2008  |   Pubmed ID: 18058229
• Retrospective Analysis of Locally Advanced Noninflammatory Breast Cancer from Chennai, South India, 1990-1999
  International Journal of Radiation Oncology, Biology, Physics. Jan, 2008  |   Pubmed ID: 17869447
• Biochemistry. Signaling Across the Cell Membrane
  Science (New York, N.Y.). Nov, 2007  |   Pubmed ID: 18033872
• Dynamic Scaffolding in a G Protein-coupled Signaling System
  Cell. Oct, 2007  |   Pubmed ID: 17923089
• Role of GSTM1 (Null/Present), GSTP1 (Ile105Val) and P53 (Arg72Pro) Genetic Polymorphisms and the Risk of Breast Cancer: a Case Control Study from South India
  Asian Pacific Journal of Cancer Prevention : APJCP. Apr-Jun, 2007  |   Pubmed ID: 17696741
• Elevated Basal Slippage Mutation Rates Among the Canidae
  The Journal of Heredity. 2007  |   Pubmed ID: 17437958
• Signal Transduction Pathway of TonB-dependent Transporters
  Proceedings of the National Academy of Sciences of the United States of America. Jan, 2007  |   Pubmed ID: 17197416
• Knowledge-based Potentials in Protein Design
  Current Opinion in Structural Biology. Aug, 2006  |   Pubmed ID: 16843652
• A Global Analysis of Cross-talk in a Mammalian Cellular Signalling Network
  Nature Cell Biology. Jun, 2006  |   Pubmed ID: 16699502
• Natural-like Function in Artificial WW Domains
  Nature. Sep, 2005  |   Pubmed ID: 16177795
• Evolutionary Information for Specifying a Protein Fold
  Nature. Sep, 2005  |   Pubmed ID: 16177782
• Structural Determinants of Allosteric Ligand Activation in RXR Heterodimers
  Cell. Feb, 2004  |   Pubmed ID: 15016376
• Local Complexity of Amino Acid Interactions in a Protein Core
  Proceedings of the National Academy of Sciences of the United States of America. Jan, 2004  |   Pubmed ID: 14684834
• Allosteric Determinants in Guanine Nucleotide-binding Proteins
  Proceedings of the National Academy of Sciences of the United States of America. Nov, 2003  |   Pubmed ID: 14623969
• Cell Biology. A Matter of Life or Death
  Science (New York, N.Y.). Mar, 2003  |   Pubmed ID: 12637727
• Evolutionarily Conserved Networks of Residues Mediate Allosteric Communication in Proteins
  Nature Structural Biology. Jan, 2003  |   Pubmed ID: 12483203
• Overview of the Alliance for Cellular Signaling
  Nature. Dec, 2002  |   Pubmed ID: 12478301
• Knowledge-based Potential Functions in Protein Design
  Current Opinion in Structural Biology. Aug, 2002  |   Pubmed ID: 12163066