Robert L. Hettich Biosciences Division Oak Ridge National Laboratory Biography Publications Institution JoVE Articles Robert L. Hettich has not added a biography. If you are Robert L. Hettich and would like to personalize this page please email our Author Liaison for assistance. Publications Towards Engineering Ectomycorrhization into Switchgrass Bioenergy Crops Via a Lectin Receptor-like Kinase Plant Biotechnology Journal. Jul, 2021 | Pubmed ID: 34272801 Genetic and Behavioral Adaptation of Candida Parapsilosis to the Microbiome of Hospitalized Infants Revealed by in Situ Genomics, Transcriptomics, and Proteomics Microbiome. 06, 2021 | Pubmed ID: 34154658 Genomic Reconstruction of Fossil and Living Microorganisms in Ancient Siberian Permafrost Microbiome. 05, 2021 | Pubmed ID: 34001281 Formation, Characterization and Modeling of Emergent Synthetic Microbial Communities Computational and Structural Biotechnology Journal. 2021 | Pubmed ID: 33995895 Identification and Characterization of Proteins of Unknown Function (PUFs) in Clostridium Thermocellum DSM 1313 Strains As Potential Genetic Engineering Targets Biotechnology for Biofuels. May, 2021 | Pubmed ID: 33971924 Anaerobic Microbial Metabolism of Dichloroacetate MBio. 04, 2021 | Pubmed ID: 33906923 Stepping on the Gas to a Circular Economy: Accelerating Development of Carbon-Negative Chemical Production from Gas Fermentation Annual Review of Chemical and Biomolecular Engineering. 06, 2021 | Pubmed ID: 33872517 Metabolism of Syringyl Lignin-derived Compounds in Pseudomonas Putida Enables Convergent Production of 2-pyrone-4,6-dicarboxylic Acid Metabolic Engineering. 05, 2021 | Pubmed ID: 33741529 Microbiota Functional Activity Biosensors for Characterizing Nutrient Metabolism in Vivo ELife. Mar, 2021 | Pubmed ID: 33684031 Respiratory Vinyl Chloride Reductive Dechlorination to Ethene in TceA-Expressing Environmental Science & Technology. 04, 2021 | Pubmed ID: 33683880 Five Key Aspects of Metaproteomics As a Tool to Understand Functional Interactions in Host-associated Microbiomes PLoS Pathogens. 02, 2021 | Pubmed ID: 33630960 The Core Chemotaxis Proteins CheA1 and CheA4 Link Chemotaxis Signaling with Nitrogen Metabolism MSystems. Feb, 2021 | Pubmed ID: 33594007 A Lysate Proteome Engineering Strategy for Enhancing Cell-free Metabolite Production Metabolic Engineering Communications. Jun, 2021 | Pubmed ID: 33552897 Coculture with Hemicellulose-fermenting Microbes Reverses Inhibition of Corn Fiber Solubilization by Clostridium Thermocellum at Elevated Solids Loadings Biotechnology for Biofuels. Jan, 2021 | Pubmed ID: 33461608 Targeted Growth Medium Dropouts Promote Aromatic Compound Synthesis in Crude Cell-Free Systems ACS Synthetic Biology. 11, 2020 | Pubmed ID: 33044063 Structural and Proteomic Studies of the Virus Demonstrate a Global Distribution of Virus-Encoded Carbohydrate Processing Frontiers in Microbiology. 2020 | Pubmed ID: 33013751 A Carotenoid-deficient Mutant of the Plant-associated Microbe Pantoea Sp. YR343 Displays an Altered Membrane Proteome Scientific Reports. 09, 2020 | Pubmed ID: 32917935 A Nitrogenase-like Enzyme System Catalyzes Methionine, Ethylene, and Methane Biogenesis Science (New York, N.Y.). 08, 2020 | Pubmed ID: 32855335 Molecular Remodeling in Populus PdKOR RNAi Roots Profiled Using LC-MS/MS Proteomics Proteomics. 12, 2020 | Pubmed ID: 32846035 Characterizing Intracellular Proteomes for Microbes: An Experimental Approach Using Label-Free Protein Quantitation Methods in Molecular Biology (Clifton, N.J.). 2020 | Pubmed ID: 32720148 Biogeography of Microbial Bile Acid Transformations Along the Murine Gut Journal of Lipid Research. 11, 2020 | Pubmed ID: 32661017 A Viable New Strategy for the Discovery of Peptide Proteolytic Cleavage Products in Plant-Microbe Interactions Molecular Plant-microbe Interactions : MPMI. Oct, 2020 | Pubmed ID: 32597696 Impact of Fatty-Acid Labeling of Membranes on the Cellular Lipidome and Proteome Frontiers in Microbiology. 2020 | Pubmed ID: 32499768 Outer Membrane Vesicles Catabolize Lignin-derived Aromatic Compounds in KT2440 Proceedings of the National Academy of Sciences of the United States of America. 04, 2020 | Pubmed ID: 32245809 Gene Targets for Engineering Osmotolerance in Biotechnology for Biofuels. 2020 | Pubmed ID: 32190115 Active Sulfur Cycling in the Terrestrial Deep Subsurface The ISME Journal. 05, 2020 | Pubmed ID: 32047278 Genome-Resolved Proteomic Stable Isotope Probing of Soil Microbial Communities Using CO and C-Methanol Frontiers in Microbiology. 2019 | Pubmed ID: 31866955 Integrated Proteomics and Lipidomics Reveal That the Swarming Motility of Is Characterized by Phospholipid Modification, Surfactant Deployment, and Flagellar Specialization Relative to Swimming Motility Frontiers in Microbiology. 2019 | Pubmed ID: 31798553 Comparing DNA, RNA and Protein Levels for Measuring Microbial Dynamics in Soil Microcosms Amended with Nitrogen Fertilizer Scientific Reports. 11, 2019 | Pubmed ID: 31772206 Impact of Fixed Nitrogen Availability on Reductive Dechlorination Activity Environmental Science & Technology. 12, 2019 | Pubmed ID: 31693350 Bioremediation of a Common Product of Food Processing by a Human Gut Bacterium Cell Host & Microbe. 10, 2019 | Pubmed ID: 31585844 Interspecies Competition Impacts Targeted Manipulation of Human Gut Bacteria by Fiber-Derived Glycans Cell. 09, 2019 | Pubmed ID: 31539500 Surface Water Microbial Community Response to the Biocide 2,2-Dibromo-3-Nitrilopropionamide, Used in Unconventional Oil and Gas Extraction Applied and Environmental Microbiology. 11, 2019 | Pubmed ID: 31444200 Targeted Detection of Dehalococcoides Mccartyi Microbial Protein Biomarkers As Indicators of Reductive Dechlorination Activity in Contaminated Groundwater Scientific Reports. 07, 2019 | Pubmed ID: 31332202 Effects of Microbiota-directed Foods in Gnotobiotic Animals and Undernourished Children Science (New York, N.Y.). 07, 2019 | Pubmed ID: 31296738 One-time Nitrogen Fertilization Shifts Switchgrass Soil Microbiomes Within a Context of Larger Spatial and Temporal Variation PloS One. 2019 | Pubmed ID: 31211785 Exploiting the Dynamic Relationship Between Peptide Separation Quality and Peptide Coisolation in a Multiple-Peptide Matches-per-Spectrum Approach Offers a Strategy To Optimize Bottom-Up Proteomics Throughput and Depth Analytical Chemistry. 06, 2019 | Pubmed ID: 31075198 Correction To: Diel Rewiring and Positive Selection of Ancient Plant Proteins Enabled Evolution of CAM Photosynthesis in Agave BMC Genomics. 04, 2019 | Pubmed ID: 30971209 Scavenging Organic Nitrogen and Remodelling Lipid Metabolism Are Key Survival Strategies Adopted by the Endophytic Fungi, Serendipita Vermifera and Serendipita Bescii to Alleviate Nitrogen and Phosphorous Starvation in Vitro Environmental Microbiology Reports. 08, 2019 | Pubmed ID: 30970176 Evaluation of an Untargeted Nano-liquid Chromatography-mass Spectrometry Approach to Expand Coverage of Low Molecular Weight Dissolved Organic Matter in Arctic Soil Scientific Reports. 04, 2019 | Pubmed ID: 30967565 Metaproteomics Reveals Persistent and Phylum-redundant Metabolic Functional Stability in Adult Human Gut Microbiomes of Crohn's Remission Patients Despite Temporal Variations in Microbial Taxa, Genomes, and Proteomes Microbiome. 02, 2019 | Pubmed ID: 30744677 Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing Journal of Proteome Research. 04, 2019 | Pubmed ID: 30702898 Proteogenomics Reveals Novel Reductive Dehalogenases and Methyltransferases Expressed During Anaerobic Dichloromethane Metabolism Applied and Environmental Microbiology. 03, 2019 | Pubmed ID: 30658979 Comparative Genomics and Proteomic Analysis of Assimilatory Sulfate Reduction Pathways in Anaerobic Methanotrophic Archaea Frontiers in Microbiology. 2018 | Pubmed ID: 30559729 Quantifying Codon Usage in Signal Peptides: Gene Expression and Amino Acid Usage Explain Apparent Selection for Inefficient Codons Biochimica Et Biophysica Acta. Biomembranes. 12, 2018 | Pubmed ID: 30279149 Utilization of a Detergent-Based Method for Direct Microbial Cellular Lysis/Proteome Extraction from Soil Samples for Metaproteomics Studies Methods in Molecular Biology (Clifton, N.J.). 2018 | Pubmed ID: 30259494 Biogeochemical Cycling by a Low-Diversity Microbial Community in Deep Groundwater Frontiers in Microbiology. 2018 | Pubmed ID: 30245678 Transcriptomic and Proteomic Changes from Medium Supplementation and Strain Evolution in High-yielding Clostridium Thermocellum Strains Journal of Industrial Microbiology & Biotechnology. Nov, 2018 | Pubmed ID: 30187243 Diel Rewiring and Positive Selection of Ancient Plant Proteins Enabled Evolution of CAM Photosynthesis in Agave BMC Genomics. Aug, 2018 | Pubmed ID: 30081833 Author Correction: Maternal Consumption of Fish Oil Programs Reduced Adiposity in Broiler Chicks Scientific Reports. Jul, 2018 | Pubmed ID: 30054506 Quantitative Proteomic Analysis of Biological Processes and Responses of the Bacterium Desulfovibrio Desulfuricans ND132 Upon Deletion of Its Mercury Methylation Genes Proteomics. 09, 2018 | Pubmed ID: 30009483 Hospitalized Premature Infants Are Colonized by Related Bacterial Strains with Distinct Proteomic Profiles MBio. 04, 2018 | Pubmed ID: 29636439 The Diversity and Specificity of the Extracellular Proteome in the Cellulolytic Bacterium is Driven by the Nature of the Cellulosic Growth Substrate Biotechnology for Biofuels. 2018 | Pubmed ID: 29588665 Quantitative Proteome Profile of Water Deficit Stress Responses in Eastern Cottonwood (Populus Deltoides) Leaves PloS One. 2018 | Pubmed ID: 29447168 Identification of Peptide-binding Sites Within BSA Using Rapid, Laser-induced Covalent Cross-linking Combined with High-performance Mass Spectrometry Journal of Molecular Recognition : JMR. 02, 2018 | Pubmed ID: 28994207 Phosphorylation of Ribosomal Protein RPS6 Integrates Light Signals and Circadian Clock Signals Frontiers in Plant Science. 2017 | Pubmed ID: 29403507 Deletion of the Gene Increases Ethanol Production in and Several Other Thermophilic Anaerobic Bacteria Biotechnology for Biofuels. 2017 | Pubmed ID: 29213322 The Kalanchoë Genome Provides Insights into Convergent Evolution and Building Blocks of Crassulacean Acid Metabolism Nature Communications. 12, 2017 | Pubmed ID: 29196618 Eliminating a Global Regulator of Carbon Catabolite Repression Enhances the Conversion of Aromatic Lignin Monomers to Muconate in KT2440 Metabolic Engineering Communications. Dec, 2017 | Pubmed ID: 29188181 Maternal Consumption of Fish Oil Programs Reduced Adiposity in Broiler Chicks Scientific Reports. 10, 2017 | Pubmed ID: 29030616 Functional Analysis of the Glucan Degradation Locus in Caldicellulosiruptor Bescii Reveals Essential Roles of Component Glycoside Hydrolases in Plant Biomass Deconstruction Applied and Environmental Microbiology. 12, 2017 | Pubmed ID: 28986379 Erratum for Skennerton Et Al., "Methane-Fueled Syntrophy Through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved Within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea" MBio. 10, 2017 | Pubmed ID: 28974619 Mechanisms of Subzero Growth in the Cryophile Planococcus Halocryophilus Determined Through Proteomic Analysis Environmental Microbiology. 11, 2017 | Pubmed ID: 28834033 Grape Pomace Compost Harbors Organohalide-respiring Dehalogenimonas Species with Novel Reductive Dehalogenase Genes The ISME Journal. 12, 2017 | Pubmed ID: 28809851 Phylogenetically Conserved Resource Partitioning in the Coastal Microbial Loop The ISME Journal. 12, 2017 | Pubmed ID: 28800138 Methane-Fueled Syntrophy Through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved Within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea MBio. 08, 2017 | Pubmed ID: 28765215 Genome-resolved Metaproteomic Characterization of Preterm Infant Gut Microbiota Development Reveals Species-specific Metabolic Shifts and Variabilities During Early Life Microbiome. 07, 2017 | Pubmed ID: 28693612 Multi-omics Analysis Provides Insight to the Ignicoccus Hospitalis-Nanoarchaeum Equitans Association Biochimica Et Biophysica Acta. General Subjects. Sep, 2017 | Pubmed ID: 28591626 Optimized Extraction Method To Remove Humic Acid Interferences from Soil Samples Prior to Microbial Proteome Measurements Journal of Proteome Research. 07, 2017 | Pubmed ID: 28537741 The Effects of Micronutrient Deficiencies on Bacterial Species from the Human Gut Microbiota Science Translational Medicine. 05, 2017 | Pubmed ID: 28515336 Specialized Activities and Expression Differences for Clostridium Thermocellum Biofilm and Planktonic Cells Scientific Reports. 02, 2017 | Pubmed ID: 28240279 Pentose Sugars Inhibit Metabolism and Increase Expression of an AgrD-type Cyclic Pentapeptide in Clostridium Thermocellum Scientific Reports. 02, 2017 | Pubmed ID: 28230109 Genome-Resolved Meta-Omics Ties Microbial Dynamics to Process Performance in Biotechnology for Thiocyanate Degradation Environmental Science & Technology. 03, 2017 | Pubmed ID: 28139919 The Protein and Neutral Lipid Composition of Lipid Droplets Isolated from the Fission Yeast, Schizosaccharomyces Pombe Journal of Microbiology (Seoul, Korea). Feb, 2017 | Pubmed ID: 28120187 Impacts of Chemical Gradients on Microbial Community Structure The ISME Journal. 04, 2017 | Pubmed ID: 28094795 Improved Growth Rate in Hydrogenase Mutant Via Perturbed Sulfur Metabolism Biotechnology for Biofuels. 2017 | Pubmed ID: 28053665 Development of a Plasmid-based Expression System in and Its Use to Screen Heterologous Expression of Bifunctional Alcohol Dehydrogenases (s) Metabolic Engineering Communications. Dec, 2016 | Pubmed ID: 29142822 Transcriptomic and Proteomic Insights into Innate Immunity and Adaptations to a Symbiotic Lifestyle in the Gutless Marine Worm Olavius Algarvensis BMC Genomics. 11, 2016 | Pubmed ID: 27871231 Transcript, Protein and Metabolite Temporal Dynamics in the CAM Plant Agave Nature Plants. 11, 2016 | Pubmed ID: 27869799 Proteogenomic Analyses Indicate Bacterial Methylotrophy and Archaeal Heterotrophy Are Prevalent Below the Grass Root Zone PeerJ. 2016 | Pubmed ID: 27843720 Proteomic Stable Isotope Probing Reveals Taxonomically Distinct Patterns in Amino Acid Assimilation by Coastal Marine Bacterioplankton MSystems. Mar-Apr, 2016 | Pubmed ID: 27822523 Reconstructing a Hydrogen-driven Microbial Metabolic Network in Opalinus Clay Rock Nature Communications. 10, 2016 | Pubmed ID: 27739431 Global Proteome Response to Deletion of Genes Related to Mercury Methylation and Dissimilatory Metal Reduction Reveals Changes in Respiratory Metabolism in Geobacter Sulfurreducens PCA Journal of Proteome Research. 10, 2016 | Pubmed ID: 27463218 Metabolic Regulation As a Consequence of Anaerobic 5-Methylthioadenosine Recycling in Rhodospirillum Rubrum MBio. 07, 2016 | Pubmed ID: 27406564 Genomics-informed Isolation and Characterization of a Symbiotic Nanoarchaeota System from a Terrestrial Geothermal Environment Nature Communications. 07, 2016 | Pubmed ID: 27378076 Simultaneous Achievement of High Ethanol Yield and Titer in Clostridium Thermocellum Biotechnology for Biofuels. 2016 | Pubmed ID: 27257435 Proteomic Stable Isotope Probing Reveals Biosynthesis Dynamics of Slow Growing Methane Based Microbial Communities Frontiers in Microbiology. 2016 | Pubmed ID: 27199908 Dramatic Performance of Clostridium Thermocellum Explained by Its Wide Range of Cellulase Modalities Science Advances. Feb, 2016 | Pubmed ID: 26989779 Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage Frontiers in Microbiology. 2016 | Pubmed ID: 26973616 Draft Genome Sequence of Streptomyces Vitaminophilus ATCC 31673, a Producer of Pyrrolomycin Antibiotics, Some of Which Contain a Nitro Group Genome Announcements. Jan, 2016 | Pubmed ID: 26798098 Critical Biogeochemical Functions in the Subsurface Are Associated with Bacteria from New Phyla and Little Studied Lineages Environmental Microbiology. Jan, 2016 | Pubmed ID: 26033198 Characterization of Fatty Acids in Crenarchaeota by GC-MS and NMR Archaea (Vancouver, B.C.). 2015 | Pubmed ID: 26880868 Integrating MRNA and Protein Sequencing Enables the Detection and Quantitative Profiling of Natural Protein Sequence Variants of Populus Trichocarpa Journal of Proteome Research. Dec, 2015 | Pubmed ID: 26483142 Untargeted Metabolomics Studies Employing NMR and LC-MS Reveal Metabolic Coupling Between and Its Archaeal Host Metabolomics : Official Journal of the Metabolomic Society. Aug, 2015 | Pubmed ID: 26273237 Strain-resolved Microbial Community Proteomics Reveals Simultaneous Aerobic and Anaerobic Function During Gastrointestinal Tract Colonization of a Preterm Infant Frontiers in Microbiology. 2015 | Pubmed ID: 26191049 A Roadmap for Research on Crassulacean Acid Metabolism (CAM) to Enhance Sustainable Food and Bioenergy Production in a Hotter, Drier World The New Phytologist. Aug, 2015 | Pubmed ID: 26153373 Rescuing Those Left Behind: Recovering and Characterizing Underdigested Membrane and Hydrophobic Proteins To Enhance Proteome Measurement Depth Analytical Chemistry. Aug, 2015 | Pubmed ID: 26110888 Metaproteomics Reveals Functional Shifts in Microbial and Human Proteins During a Preterm Infant Gut Colonization Case Proteomics. Oct, 2015 | Pubmed ID: 26077811 Metagenome Sequencing of a Coastal Marine Microbial Community from Monterey Bay, California Genome Announcements. Apr, 2015 | Pubmed ID: 25931598 Microbial Metaproteomics for Characterizing the Range of Metabolic Functions and Activities of Human Gut Microbiota Proteomics. Oct, 2015 | Pubmed ID: 25914197 Discrete and Structurally Unique Proteins (tāpirins) Mediate Attachment of Extremely Thermophilic Caldicellulosiruptor Species to Cellulose The Journal of Biological Chemistry. Apr, 2015 | Pubmed ID: 25720489 Development of an Enhanced Metaproteomic Approach for Deepening the Microbiome Characterization of the Human Infant Gut Journal of Proteome Research. Jan, 2015 | Pubmed ID: 25350865 Elevated Temperature Alters Proteomic Responses of Individual Organisms Within a Biofilm Community The ISME Journal. Jan, 2015 | Pubmed ID: 25050524 Life on the Edge: Functional Genomic Response of Ignicoccus Hospitalis to the Presence of Nanoarchaeum Equitans The ISME Journal. Jan, 2015 | Pubmed ID: 25012904 A Comparative Multidimensional LC-MS Proteomic Analysis Reveals Mechanisms for Furan Aldehyde Detoxification in Thermoanaerobacter Pseudethanolicus 39E Biotechnology for Biofuels. 2014 | Pubmed ID: 25506391 Nitrogen Cycling. The Environmental Controls That Govern the End Product of Bacterial Nitrate Respiration Science (New York, N.Y.). Aug, 2014 | Pubmed ID: 25104387 Diverse and Divergent Protein Post-translational Modifications in Two Growth Stages of a Natural Microbial Community Nature Communications. Jul, 2014 | Pubmed ID: 25059763 Metaproteomics: Extracting and Mining Proteome Information to Characterize Metabolic Activities in Microbial Communities Current Protocols in Bioinformatics. Jun, 2014 | Pubmed ID: 24939130 Recoding of the Stop Codon UGA to Glycine by a BD1-5/SN-2 Bacterium and Niche Partitioning Between Alpha- and Gammaproteobacteria in a Tidal Sediment Microbial Community Naturally Selected in a Laboratory Chemostat Frontiers in Microbiology. 2014 | Pubmed ID: 24904545 Development of a Multipoint Quantitation Method to Simultaneously Measure Enzymatic and Structural Components of the Clostridium Thermocellum Cellulosome Protein Complex Journal of Proteome Research. Feb, 2014 | Pubmed ID: 24274857 Identification and Environmental Distribution of DcpA, Which Encodes the Reductive Dehalogenase Catalyzing the Dichloroelimination of 1,2-dichloropropane to Propene in Organohalide-respiring Chloroflexi Applied and Environmental Microbiology. Feb, 2014 | Pubmed ID: 24242248 Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides Cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome PLoS Biology. 2013 | Pubmed ID: 23976882 Environmental Proteomics Reveals Early Microbial Community Responses to Biostimulation at a Uranium- and Nitrate-contaminated Site Proteomics. Oct, 2013 | Pubmed ID: 23894087 Isolation and Chemical Analysis of Nanoparticles from English Ivy (Hedera Helix L.) Journal of the Royal Society, Interface / the Royal Society. Oct, 2013 | Pubmed ID: 23883948 Comparative Informatics Analysis to Evaluate Site-specific Protein Oxidation in Multidimensional LC-MS/MS Data Journal of Proteome Research. Jul, 2013 | Pubmed ID: 23827042 Insights into the Structure and Metabolic Function of Microbes That Shape Pelagic Iron-rich Aggregates ("iron Snow") Applied and Environmental Microbiology. Jul, 2013 | Pubmed ID: 23645202 New Group in the Leptospirillum Clade: Cultivation-independent Community Genomics, Proteomics, and Transcriptomics of the New Species "Leptospirillum Group IV UBA BS" Applied and Environmental Microbiology. Sep, 2013 | Pubmed ID: 23645189 Metaproteomics: Harnessing the Power of High Performance Mass Spectrometry to Identify the Suite of Proteins That Control Metabolic Activities in Microbial Communities Analytical Chemistry. May, 2013 | Pubmed ID: 23469896 Characterizing the Range of Extracellular Protein Post-translational Modifications in a Cellulose-degrading Bacteria Using a Multiple Proteolyic Digestion/peptide Fragmentation Approach Analytical Chemistry. Mar, 2013 | Pubmed ID: 23406086 Experimental Approach to Controllably Vary Protein Oxidation While Minimizing Electrode Adsorption for Boron-doped Diamond Electrochemical Surface Mapping Applications Analytical Chemistry. Jan, 2013 | Pubmed ID: 23210708 Role of the CipA Scaffoldin Protein in Cellulose Solubilization, As Determined by Targeted Gene Deletion and Complementation in Clostridium Thermocellum Journal of Bacteriology. Feb, 2013 | Pubmed ID: 23204466 Putting the Pieces Together: High-performance LC-MS/MS Provides Network-, Pathway-, and Protein-level Perspectives in Populus Molecular & Cellular Proteomics : MCP. Jan, 2013 | Pubmed ID: 23073815 Integrated Metagenomics/metaproteomics Reveals Human Host-microbiota Signatures of Crohn's Disease PloS One. 2012 | Pubmed ID: 23209564 Biostimulation Induces Syntrophic Interactions That Impact C, S and N Cycling in a Sediment Microbial Community The ISME Journal. Nov, 2012 | Pubmed ID: 23190730 Clostridium Thermocellum ATCC27405 Transcriptomic, Metabolomic and Proteomic Profiles After Ethanol Stress BMC Genomics. Jul, 2012 | Pubmed ID: 22823947 Phage-induced Expression of CRISPR-associated Proteins is Revealed by Shotgun Proteomics in Streptococcus Thermophilus PloS One. 2012 | Pubmed ID: 22666452 Caldicellulosiruptor Core and Pangenomes Reveal Determinants for Noncellulosomal Thermophilic Deconstruction of Plant Biomass Journal of Bacteriology. Aug, 2012 | Pubmed ID: 22636774 Microbial Metaproteomics: Identifying the Repertoire of Proteins That Microorganisms Use to Compete and Cooperate in Complex Environmental Communities Current Opinion in Microbiology. Jun, 2012 | Pubmed ID: 22632760 Systematic Comparison of Label-free, Metabolic Labeling, and Isobaric Chemical Labeling for Quantitative Proteomics on LTQ Orbitrap Velos Journal of Proteome Research. Mar, 2012 | Pubmed ID: 22188275 Microbes in Thawing Permafrost: the Unknown Variable in the Climate Change Equation The ISME Journal. Apr, 2012 | Pubmed ID: 22094350 Defining the Boundaries and Characterizing the Landscape of Functional Genome Expression in Vascular Tissues of Populus Using Shotgun Proteomics Journal of Proteome Research. Jan, 2012 | Pubmed ID: 22003893 Strategies for Metagenomic-guided Whole-community Proteomics of Complex Microbial Environments PloS One. 2011 | Pubmed ID: 22132090 Comparative Shotgun Proteomic Analysis of Clostridium Acetobutylicum from Butanol Fermentation Using Glucose and Xylose Proteome Science. Oct, 2011 | Pubmed ID: 22008648 Label-free Quantitative Proteomics for the Extremely Thermophilic Bacterium Caldicellulosiruptor Obsidiansis Reveal Distinct Abundance Patterns Upon Growth on Cellobiose, Crystalline Cellulose, and Switchgrass Journal of Proteome Research. Dec, 2011 | Pubmed ID: 21988591 Proteomic Characterization of Cellular and Molecular Processes That Enable the Nanoarchaeum Equitans--Ignicoccus Hospitalis Relationship PloS One. 2011 | Pubmed ID: 21826220 Identification of Biofilm Matrix-associated Proteins from an Acid Mine Drainage Microbial Community Applied and Environmental Microbiology. Aug, 2011 | Pubmed ID: 21685158 Use of Label-free Quantitative Proteomics to Distinguish the Secreted Cellulolytic Systems of Caldicellulosiruptor Bescii and Caldicellulosiruptor Obsidiansis Applied and Environmental Microbiology. Jun, 2011 | Pubmed ID: 21498747 Discovery and Annotation of Small Proteins Using Genomics, Proteomics, and Computational Approaches Genome Research. Apr, 2011 | Pubmed ID: 21367939 Quantitative Tracking of Isotope Flows in Proteomes of Microbial Communities Molecular & Cellular Proteomics : MCP. Apr, 2011 | Pubmed ID: 21285414 Quantitative Proteomic Analyses of the Response of Acidophilic Microbial Communities to Different PH Conditions The ISME Journal. Jul, 2011 | Pubmed ID: 21228889 Metabolome-proteome Differentiation Coupled to Microbial Divergence MBio. Oct, 2010 | Pubmed ID: 20978538 Direct Cellular Lysis/protein Extraction Protocol for Soil Metaproteomics Journal of Proteome Research. Dec, 2010 | Pubmed ID: 20954746 Ecological Distribution and Population Physiology Defined by Proteomics in a Natural Microbial Community Molecular Systems Biology. Jun, 2010 | Pubmed ID: 20531404 Proteomics Reveals a Core Molecular Response of Pseudomonas Putida F1 to Acute Chromate Challenge BMC Genomics. 2010 | Pubmed ID: 20482812 Enigmatic, Ultrasmall, Uncultivated Archaea Proceedings of the National Academy of Sciences of the United States of America. May, 2010 | Pubmed ID: 20421484 A High-throughput De Novo Sequencing Approach for Shotgun Proteomics Using High-resolution Tandem Mass Spectrometry BMC Bioinformatics. Mar, 2010 | Pubmed ID: 20205730 PTMSearchPlus: Software Tool for Automated Protein Identification and Post-translational Modification Characterization by Integrating Accurate Intact Protein Mass and Bottom-up Mass Spectrometric Data Searches Analytical Chemistry. Oct, 2009 | Pubmed ID: 19775152 Proteogenomic Monitoring of Geobacter Physiology During Stimulated Uranium Bioremediation Applied and Environmental Microbiology. Oct, 2009 | Pubmed ID: 19717633 Community Genomic and Proteomic Analyses of Chemoautotrophic Iron-oxidizing "Leptospirillum Rubarum" (Group II) and "Leptospirillum Ferrodiazotrophum" (Group III) Bacteria in Acid Mine Drainage Biofilms Applied and Environmental Microbiology. Jul, 2009 | Pubmed ID: 19429552 Differential Accumulation of Form I RubisCO in Rhodopseudomonas Palustris CGA010 Under Photoheterotrophic Growth Conditions with Reduced Carbon Sources Journal of Bacteriology. Jul, 2009 | Pubmed ID: 19376869 Characterizing a Model Human Gut Microbiota Composed of Members of Its Two Dominant Bacterial Phyla Proceedings of the National Academy of Sciences of the United States of America. Apr, 2009 | Pubmed ID: 19321416 Phenotype Fingerprinting Suggests the Involvement of Single-genotype Consortia in Degradation of Aromatic Compounds by Rhodopseudomonas Palustris PloS One. 2009 | Pubmed ID: 19242537 Systems Biology: Functional Analysis of Natural Microbial Consortia Using Community Proteomics Nature Reviews. Microbiology. Mar, 2009 | Pubmed ID: 19219053 Comparative Temporal Proteomics of a Response Regulator (SO2426)-deficient Strain and Wild-type Shewanella Oneidensis MR-1 During Chromate Transformation Journal of Proteome Research. Jan, 2009 | Pubmed ID: 19118451 Shotgun Metaproteomics of the Human Distal Gut Microbiota The ISME Journal. Feb, 2009 | Pubmed ID: 18971961 Experimental Approach for Deep Proteome Measurements from Small-scale Microbial Biomass Samples Analytical Chemistry. Dec, 2008 | Pubmed ID: 19072265 Characterization of Cytochrome 579, an Unusual Cytochrome Isolated from an Iron-oxidizing Microbial Community Applied and Environmental Microbiology. Jul, 2008 | Pubmed ID: 18469132 Development of an Electrochemical Oxidation Method for Probing Higher Order Protein Structure with Mass Spectrometry Analytical Chemistry. May, 2008 | Pubmed ID: 18351783 Systematic Assessment of the Benefits and Caveats in Mining Microbial Post-translational Modifications from Shotgun Proteomic Data: the Response of Shewanella Oneidensis to Chromate Exposure Journal of Proteome Research. Feb, 2008 | Pubmed ID: 18171020 Characterization of Anaerobic Catabolism of P-coumarate in Rhodopseudomonas Palustris by Integrating Transcriptomics and Quantitative Proteomics Molecular & Cellular Proteomics : MCP. May, 2008 | Pubmed ID: 18156135 Dosage-dependent Proteome Response of Shewanella Oneidensis MR-1 to Acute Chromate Challenge Journal of Proteome Research. May, 2007 | Pubmed ID: 17385904 Detecting Differential and Correlated Protein Expression in Label-free Shotgun Proteomics Journal of Proteome Research. Nov, 2006 | Pubmed ID: 17081042 ProRata: A Quantitative Proteomics Program for Accurate Protein Abundance Ratio Estimation with Confidence Interval Evaluation Analytical Chemistry. Oct, 2006 | Pubmed ID: 17037911 Robust Estimation of Peptide Abundance Ratios and Rigorous Scoring of Their Variability and Bias in Quantitative Shotgun Proteomics Analytical Chemistry. Oct, 2006 | Pubmed ID: 17037910 Global Molecular and Morphological Effects of 24-hour Chromium(VI) Exposure on Shewanella Oneidensis MR-1 Applied and Environmental Microbiology. Sep, 2006 | Pubmed ID: 16957260 Characterization of PII Family (GlnK1, GlnK2, and GlnB) Protein Uridylylation in Response to Nitrogen Availability for Rhodopseudomonas Palustris Analytical Biochemistry. Oct, 2006 | Pubmed ID: 16860774 Determination of Peptide and Protein Ion Charge States by Fourier Transformation of Isotope-resolved Mass Spectra Journal of the American Society for Mass Spectrometry. Jul, 2006 | Pubmed ID: 16713712 Molecular Dynamics of the Shewanella Oneidensis Response to Chromate Stress Molecular & Cellular Proteomics : MCP. Jun, 2006 | Pubmed ID: 16524964 Determination and Comparison of the Baseline Proteomes of the Versatile Microbe Rhodopseudomonas Palustris Under Its Major Metabolic States Journal of Proteome Research. Feb, 2006 | Pubmed ID: 16457594 MASPIC: Intensity-based Tandem Mass Spectrometry Scoring Scheme That Improves Peptide Identification at High Confidence Analytical Chemistry. Dec, 2005 | Pubmed ID: 16316165 53rd American Society for Mass Spectrometry Conference. 5-9 June, 2005, Henry B Gonzalez Conference Center, San Antonio, TX, USA Expert Review of Proteomics. Aug, 2005 | Pubmed ID: 16097880 Multipole-storage-assisted Dissociation for the Characterization of Large Proteins and Simple Protein Mixtures by ESI-FTICR-MS Analytical Chemistry. May, 2005 | Pubmed ID: 15889895 Photochemical Surface Mapping of C14S-Sml1p for Constrained Computational Modeling of Protein Structure Analytical Biochemistry. May, 2005 | Pubmed ID: 15840492 DBDigger: Reorganized Proteomic Database Identification That Improves Flexibility and Speed Analytical Chemistry. Apr, 2005 | Pubmed ID: 15828782 Transcriptomic and Proteomic Characterization of the Fur Modulon in the Metal-reducing Bacterium Shewanella Oneidensis Journal of Bacteriology. Dec, 2004 | Pubmed ID: 15576789 Characterization of the 70S Ribosome from Rhodopseudomonas Palustris Using an Integrated "top-down" and "bottom-up" Mass Spectrometric Approach Journal of Proteome Research. Sep-Oct, 2004 | Pubmed ID: 15473684 A Computational Method for Assessing Peptide- Identification Reliability in Tandem Mass Spectrometry Analysis with SEQUEST Proteomics. Apr, 2004 | Pubmed ID: 15048978 Analysis of Protein Solvent Accessible Surfaces by Photochemical Oxidation and Mass Spectrometry Analytical Chemistry. Feb, 2004 | Pubmed ID: 14750862 Protein Surface Mapping by Chemical Oxidation: Structural Analysis by Mass Spectrometry Analytical Biochemistry. Feb, 2003 | Pubmed ID: 12605858 Integrating 'top-down" and "bottom-up" Mass Spectrometric Approaches for Proteomic Analysis of Shewanella Oneidensis Journal of Proteome Research. May-Jun, 2002 | Pubmed ID: 12645901 Intact Protein Analysis for Site-directed Mutagenesis Overexpression Products: Plasmid-encoded R67 Dihydrofolate Reductase Analytical Biochemistry. Jun, 2002 | Pubmed ID: 12018947 Formation and Characterization of Iron-oligonucleotide Complexes with Matrix-assisted Laser Desorption/ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Journal of the American Society for Mass Spectrometry. Oct, 1999 | Pubmed ID: 10497807 लिक्विड क्रोमेटोग्राफी लिसेट-आधारित सेल-फ्री सिस्टम्स में मेटाबोलाइट प्रोफाइलिंग के लिए अपवर्तक इंडेक्स या मास स्पेक्ट्रोमेट्रिक डिटेक्शन के साथ मिलकर Jaime Lorenzo N. Dinglasan1,3, David T. Reeves2,3, Robert L. Hettich3, Mitchel J. Doktycz3 1Graduate School of Genome Science & Technology, University of Tennessee Knoxville, 2Bredesen Center for Interdisciplinary Research, University of Tennessee Knoxville, 3Biosciences Division, Oak Ridge National Laboratory JoVE 62852 Bioengineering
लिक्विड क्रोमेटोग्राफी लिसेट-आधारित सेल-फ्री सिस्टम्स में मेटाबोलाइट प्रोफाइलिंग के लिए अपवर्तक इंडेक्स या मास स्पेक्ट्रोमेट्रिक डिटेक्शन के साथ मिलकर Jaime Lorenzo N. Dinglasan1,3, David T. Reeves2,3, Robert L. Hettich3, Mitchel J. Doktycz3 1Graduate School of Genome Science & Technology, University of Tennessee Knoxville, 2Bredesen Center for Interdisciplinary Research, University of Tennessee Knoxville, 3Biosciences Division, Oak Ridge National Laboratory JoVE 62852 Bioengineering
