Vitali Sintchenko Centre for Infectious Diseases and Microbiology-Public Health Westmead Hospital Biography Publications Institution JoVE Articles Vitali Sintchenko has not added a biography. If you are Vitali Sintchenko and would like to personalize this page please email our Author Liaison for assistance. Publications Genome Sequencing Links Persistent Outbreak of Legionellosis in Sydney to an Emerging Clone of Legionella Pneumophila ST211 Applied and Environmental Microbiology. Dec, 2017 | Pubmed ID: 29247056 Comparative Genomics of Australian and International Isolates of Salmonella Typhimurium: Correlation of Core Genome Evolution with CRISPR and Prophage Profiles Scientific Reports. Aug, 2017 | Pubmed ID: 28851865 Drug Resistance and Mycobacterium Tuberculosis Strain Diversity in TB/HIV Co-infected Patients in Ho Chi Minh City, Vietnam Journal of Global Antimicrobial Resistance. Sep, 2017 | Pubmed ID: 28743648 Francisella Tularensis Ssp. Holarctica in Ringtail Possums, Australia Emerging Infectious Diseases. 07, 2017 | Pubmed ID: 28628459 Genomic Heterogeneity of Salmonella Enterica Serovar Typhimurium Bacteriuria from Chronic Infection Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. Jul, 2017 | Pubmed ID: 28279807 Characterisation of the Bordetella Pertussis Secretome Under Different Media Journal of Proteomics. Mar, 2017 | Pubmed ID: 28242451 Evolution of Variable Number Tandem Repeats and Its Relationship with Genomic Diversity in Salmonella Typhimurium Frontiers in Microbiology. 2016 | Pubmed ID: 28082952 Transmission of Multi-drug Resistant Tuberculosis in Mongolia is Driven by Beijing Strains of Mycobacterium Tuberculosis Resistant to All First-line Drugs Tuberculosis (Edinburgh, Scotland). Dec, 2016 | Pubmed ID: 27865397 16S-23S Internal Transcribed Spacer Region PCR and Sequencer-Based Capillary Gel Electrophoresis Has Potential As an Alternative to High Performance Liquid Chromatography for Identification of Slowly Growing Nontuberculous Mycobacteria PloS One. 2016 | Pubmed ID: 27749897 Whole Genome Sequencing Demonstrates Limited Transmission Within Identified Mycobacterium Tuberculosis Clusters in New South Wales, Australia PloS One. 2016 | Pubmed ID: 27737005 SnpFilt: A Pipeline for Reference-free Assembly-based Identification of SNPs in Bacterial Genomes Computational Biology and Chemistry. 12, 2016 | Pubmed ID: 27647159 Whole Genome Sequencing of Salmonella Typhimurium Illuminates Distinct Outbreaks Caused by an Endemic Multi-locus Variable Number Tandem Repeat Analysis Type in Australia, 2014 BMC Microbiology. Sep, 2016 | Pubmed ID: 27629541 Better Colonisation of Newly Emerged Bordetella Pertussis in the Co-infection Mouse Model Study Vaccine. 07, 2016 | Pubmed ID: 27346304 Nontoxic Metal-Cyclam Complexes, a New Class of Compounds with Potency Against Drug-Resistant Mycobacterium Tuberculosis Journal of Medicinal Chemistry. Jun, 2016 | Pubmed ID: 27214150 DfrA ThyA Double Deletion in Para-Aminosalicylic Acid-Resistant Mycobacterium Tuberculosis Beijing Strains Antimicrobial Agents and Chemotherapy. Jun, 2016 | Pubmed ID: 27021327 Concordance of Four Commercial Enzyme Immunoassay and Three Immunoblot Formats for the Detection of Lyme Borreliosis Antibodies in Human Serum: the Two-tier Approach Remains Pathology. Apr, 2016 | Pubmed ID: 27020501 Identifying Likely Transmission Pathways Within a 10-Year Community Outbreak of Tuberculosis by High-Depth Whole Genome Sequencing PloS One. 2016 | Pubmed ID: 26938641 Genomic Dissection of Australian Bordetella Pertussis Isolates from the 2008-2012 Epidemic The Journal of Infection. Apr, 2016 | Pubmed ID: 26826518 Genotype Heterogeneity of Mycobacterium Tuberculosis Within Geospatial Hotspots Suggests Foci of Imported Infection in Sydney, Australia Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 06, 2016 | Pubmed ID: 26187743 Antibiotic Susceptibility of Diverse Mycobacterium Abscessus Complex Strains in New South Wales, Australia Pathology. Dec, 2015 | Pubmed ID: 26517625 Pertactin Negative Bordetella Pertussis Demonstrates Higher Fitness Under Vaccine Selection Pressure in a Mixed Infection Model Vaccine. Nov, 2015 | Pubmed ID: 26432908 It Is Not All About Single Nucleotide Polymorphisms: Comparison of Mobile Genetic Elements and Deletions in Listeria Monocytogenes Genomes Links Cases of Hospital-Acquired Listeriosis to the Environmental Source Journal of Clinical Microbiology. Nov, 2015 | Pubmed ID: 26311854 Genomic Variability of Serial Human Isolates of Salmonella Enterica Serovar Typhimurium Associated with Prolonged Carriage Journal of Clinical Microbiology. Nov, 2015 | Pubmed ID: 26311853 Epidemiology of Peripheral Lymph Node Tuberculosis and Genotyping of M. Tuberculosis Strains: A Case-Control Study PloS One. 2015 | Pubmed ID: 26177546 Editorial: Laboratory Preparedness for Ebolavirus Disease Pathology. Aug, 2015 | Pubmed ID: 26126052 Genomic Epidemiology of Clostridium Botulinum Isolates from Temporally Related Cases of Infant Botulism in New South Wales, Australia Journal of Clinical Microbiology. Sep, 2015 | Pubmed ID: 26109442 Defining the Core Genome of Salmonella Enterica Serovar Typhimurium for Genomic Surveillance and Epidemiological Typing Journal of Clinical Microbiology. Aug, 2015 | Pubmed ID: 26019201 Genome Sequencing Reveals Novel Deletions Associated with Secondary Resistance to Pyrazinamide in MDR Mycobacterium Tuberculosis The Journal of Antimicrobial Chemotherapy. Sep, 2015 | Pubmed ID: 25977398 The Role of Pathogen Genomics in Assessing Disease Transmission BMJ (Clinical Research Ed.). May, 2015 | Pubmed ID: 25964672 Intercontinental Dissemination of Azithromycin-resistant Shigellosis Through Sexual Transmission: a Cross-sectional Study The Lancet. Infectious Diseases. Aug, 2015 | Pubmed ID: 25936611 Proficiency Testing for Bacterial Whole Genome Sequencing: an End-user Survey of Current Capabilities, Requirements and Priorities BMC Infectious Diseases. Apr, 2015 | Pubmed ID: 25887164 Delineating Community Outbreaks of Salmonella Enterica Serovar Typhimurium by Use of Whole-genome Sequencing: Insights into Genomic Variability Within an Outbreak Journal of Clinical Microbiology. Apr, 2015 | Pubmed ID: 25609719 Added Value of Whole-genome Sequencing for Management of Highly Drug-resistant TB The Journal of Antimicrobial Chemotherapy. Apr, 2015 | Pubmed ID: 25492392 Investigating Genome Reduction of Bordetella Pertussis Using a Multiplex PCR-based Reverse Line Blot Assay (mPCR/RLB) BMC Research Notes. Oct, 2014 | Pubmed ID: 25319278 Clinical Microbiology Informatics Clinical Microbiology Reviews. Oct, 2014 | Pubmed ID: 25278581 Temporal Dynamics of Mycobacterium Tuberculosis Genotypes in New South Wales, Australia BMC Infectious Diseases. Aug, 2014 | Pubmed ID: 25149181 Fluoroquinolone Resistance in Non-multidrug-resistant Tuberculosis-a Surveillance Study in New South Wales, Australia, and a Review of Global Resistance Rates International Journal of Infectious Diseases : IJID : Official Publication of the International Society for Infectious Diseases. Sep, 2014 | Pubmed ID: 25086437 Use of the 5' Untranslated Region and VP1 Region to Examine the Molecular Diversity in Enterovirus B Species Journal of Medical Microbiology. Oct, 2014 | Pubmed ID: 25038138 Improved Identification of Rapidly Growing Mycobacteria by a 16S-23S Internal Transcribed Spacer Region PCR and Capillary Gel Electrophoresis PloS One. 2014 | Pubmed ID: 25013955 Pathogen Genome Bioinformatics Methods in Molecular Biology (Clifton, N.J.). 2014 | Pubmed ID: 24870136 Rapid Increase in Pertactin-deficient Bordetella Pertussis Isolates, Australia Emerging Infectious Diseases. Apr, 2014 | Pubmed ID: 24655754 Potent Antimycobacterial Activity of the Pyridoxal Isonicotinoyl Hydrazone Analog 2-pyridylcarboxaldehyde Isonicotinoyl Hydrazone: a Lipophilic Transport Vehicle for Isonicotinic Acid Hydrazide Molecular Pharmacology. Feb, 2014 | Pubmed ID: 24243647 Effectiveness of Hospital-wide Methicillin-resistant Staphylococcus Aureus (MRSA) Infection Control Policies Differs by Ward Specialty PloS One. 2013 | Pubmed ID: 24340085 The Use of Mycobacterial Interspersed Repetitive Unit Typing and Whole Genome Sequencing to Inform Tuberculosis Prevention and Control Activities New South Wales Public Health Bulletin. Jul, 2013 | Pubmed ID: 23849021 Software for Selecting the Most Informative Sets of Genomic Loci for Multi-target Microbial Typing BMC Bioinformatics. May, 2013 | Pubmed ID: 23635100 Quantitative Estimation of the Stability of Methicillin-resistant Staphylococcus Aureus Strain-typing Systems by Use of Kaplan-Meier Survival Analysis Journal of Clinical Microbiology. Jan, 2013 | Pubmed ID: 23100339 Assignment of RecA Reference Sequence Types for Enhanced Identification of the Burkholderia Cepacia Complex Pathology. Jun, 2012 | Pubmed ID: 28193343 Francisella Tularensis Subspecies Holarctica, Tasmania, Australia, 2011 Emerging Infectious Diseases. Sep, 2012 | Pubmed ID: 22931809 Prospective Genotyping of Hospital-acquired Methicillin-resistant Staphylococcus Aureus Isolates by Use of a Novel, Highly Discriminatory Binary Typing System Journal of Clinical Microbiology. Nov, 2012 | Pubmed ID: 22895043 Linear Normalised Hash Function for Clustering Gene Sequences and Identifying Reference Sequences from Multiple Sequence Alignments Microbial Informatics and Experimentation. Jan, 2012 | Pubmed ID: 22587938 Impact of a Web-based Personally Controlled Health Management System on Influenza Vaccination and Health Services Utilization Rates: a Randomized Controlled Trial Journal of the American Medical Informatics Association : JAMIA. Sep-Oct, 2012 | Pubmed ID: 22582203 Protocol for a Randomised Controlled Trial Examining the Impact of a Web-based Personally Controlled Health Management System on the Uptake of Influenza Vaccination Rates BMC Health Services Research. Apr, 2012 | Pubmed ID: 22462549 Improving Resolution of Public Health Surveillance for Human Salmonella Enterica Serovar Typhimurium Infection: 3 Years of Prospective Multiple-locus Variable-number Tandem-repeat Analysis (MLVA) BMC Infectious Diseases. Mar, 2012 | Pubmed ID: 22462487 百日咳菌の進化の百日咳毒素プロモーターPtxP3対立遺伝子の選択と創発 Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. Jan, 2012 | Pubmed ID: 22293463 ファージ型の遺伝的関係とSalmonella Enterica血清型Typhimuriumの一塩基多型のタイピング Journal of Clinical Microbiology. Jan, 2012 | Pubmed ID: 22205813 Translational Web Robots for Pathogen Genome Analysis Microbial Informatics and Experimentation. Oct, 2011 | Pubmed ID: 22587672 ノカルジア属の参照配列類似性および 16S RRNA 遺伝子配列データのクラスタ リング解析による定義。 PloS One. 2011 | Pubmed ID: 21687706 系統プロファイルの計算細菌ゲノムワイドな解析は、連鎖球菌Agalactiaeの潜在的な病原性遺伝子を明らかに PloS One. 2011 | Pubmed ID: 21483735 Gordonia、Rhodococcus と Tsukamurella 種の同定を改良によって 5'-16S RRNA 遺伝子配列を終了します。 Pathology. Jan, 2011 | Pubmed ID: 21240067 エディターズチョイス: マイコバクテリウムの Bovis 細菌カルメット-ゲラン膀胱癌免疫療法の使用におけるイソニアジド抵抗性。 Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America. Jan, 2011 | Pubmed ID: 21148524 比較ゲノム解析から百日咳菌の進化への洞察:ワクチン駆動型選択の証拠 Molecular Biology and Evolution. Jan, 2011 | Pubmed ID: 20833694 朝食、セキュリティ情報をバグ: バイオセキュリ ティーと感染症。 New South Wales Public Health Bulletin. May-Jun, 2010 | Pubmed ID: 21604605 SecA1 遺伝子配列の多型のノカルジア属の種同定および種内の遺伝的多様性の認識。 Journal of Clinical Microbiology. Nov, 2010 | Pubmed ID: 20810768 メチシリン耐性黄色ブドウ球菌のブドウ球菌カセット染色体mecタイプIVの予想外の多様性 Journal of Clinical Microbiology. Oct, 2010 | Pubmed ID: 20686095 マルチプレックスPCRおよび逆ラインブロットアッセイによって強化されたファージから派生したオープンリーディングフレームタイピングの利用による病院におけるメチシリン耐性黄色ブドウ球菌伝送の迅速同定 Journal of Clinical Microbiology. Aug, 2010 | Pubmed ID: 20519463 有病率の低い集団における結核菌の遺伝子型の3年間の縦断的研究 Pathology. Apr, 2010 | Pubmed ID: 20350221 PubMed の広域の連想研究感染症。 PloS One. 2010 | Pubmed ID: 20224767 Multilocus可変数のタンデムリピート解析により同定百日咳菌のクローン Emerging Infectious Diseases. Feb, 2010 | Pubmed ID: 20113564 逆ラインしみの交配と DNA シーケンシング研究 16S 23S RRNA 遺伝子の遺伝子間のスペーサー領域 5 ノカルジア属細菌病原性新興の。 Journal of Medical Microbiology. May, 2010 | Pubmed ID: 20110385 ターゲット 16S RRNA と 16S 23S RRNA 逆ラインしみの交配による病原性のノカルジア属の同定遺伝子スペーサー領域。 Journal of Clinical Microbiology. Feb, 2010 | Pubmed ID: 19955277 連鎖球菌Agalactiaeの一般的に使用される分子疫学マーカーは病原性を予測するようには見えない Pathology. 2009 | Pubmed ID: 19900108 インフルエンザ流行時 Wyd シドニー: 検査とアウトブレイクの封じ込めを集まる固まりのケース定義のユーティリティ。 PloS One. 2009 | Pubmed ID: 19727401 割り当て参照の 5'-16S RDNA 塩基と種特異的シーケンス遺伝子多型が向上種同定のノカルジア終了します。 The Open Microbiology Journal. 2009 | Pubmed ID: 19639036 ローリングサークル増幅及び多重結核菌のKatGと荷遺伝子変異の迅速な検出のための対立遺伝子特異的PCR International Journal of Medical Microbiology : IJMM. Dec, 2009 | Pubmed ID: 19604720 迅速なブドウ球菌カセット染色体mec(SCCmec)タイピングのための新しいマルチプレックスPCRベースのリバースラインブロットハイブリダイゼーション(mPCR / RLB)アッセイ Journal of Medical Microbiology. Aug, 2009 | Pubmed ID: 19528184 HPLCおよび16S RRNA遺伝子配列決定と比較して遺伝子型結核CM / ASアッセイの有用性:非結核性抗酸菌の同定 Journal of Medical Microbiology. Jul, 2009 | Pubmed ID: 19502366 研究室案内検出伝染病の流行: 三世代の監視システムの。 Archives of Pathology & Laboratory Medicine. Jun, 2009 | Pubmed ID: 19492884 リアルタイムPCRと高解像度メルト分析を用いた無細胞ワクチンの抗原をコードする遺伝子を標的と百日咳菌の迅速かつ正確なタイピング Journal of Microbiological Methods. Jun, 2009 | Pubmed ID: 19341769 Silico 優先候補遺伝子の原核生物の遺伝子機能の発見で: 系統プロファイルのアプリケーション。 BMC Bioinformatics. 2009 | Pubmed ID: 19292914 バイオインフォマティクスに向けて感染症制御を支援しました。 BMC Bioinformatics. 2009 | Pubmed ID: 19208185 スケーラブルな遺伝子型クラスタリングを用いた新興BiothreatsのBiosurveillance Journal of Biomedical Informatics. Feb, 2009 | Pubmed ID: 18723122 百日咳の再出現: 診断および監視のための含意。 New South Wales Public Health Bulletin. Jul-Aug, 2008 | Pubmed ID: 19007547 抗生物質の処方のための意思決定支援システム Current Opinion in Infectious Diseases. Dec, 2008 | Pubmed ID: 18988320 比較ゲノムシーケンシングを用いた百日咳菌の一塩基多型のゲノムワイド解析 Research in Microbiology. Nov-Dec, 2008 | Pubmed ID: 18790049 臨床バイオインフォマティクスにおける意思決定支援システムの開発。 Methods in Molecular Medicine. 2008 | Pubmed ID: 18453098 臨床医の情報ニーズと意思決定支援のケアの異なるモデルによって影響ですか?実験研究。 Studies in Health Technology and Informatics. 2007 | Pubmed ID: 17911845 エリスロマイシンに百日咳の感受性は変化している?オーストラリア分離株のうち1971-2006 MICの動向 The Journal of Antimicrobial Chemotherapy. Nov, 2007 | Pubmed ID: 17827145 メチシリン耐性黄色ブドウ球菌の特性のシングルおよびmultilocusシーケンスタイピングと毒素遺伝子プロファイリングの比較 Journal of Clinical Microbiology. Oct, 2007 | Pubmed ID: 17715374 我々 は右の傾きを測定ですか?コンピュータ ・意思決定の影響変数サポート上の患者のアウトカム: システマティック レビュー。 Medical Informatics and the Internet in Medicine. Sep, 2007 | Pubmed ID: 17701828 ポイント オブ ケア コミュニティ-取得肺炎のためのテスト: 我々 はすべての答えを持って? The Medical Journal of Australia. Jul, 2007 | Pubmed ID: 17605702 疾病管理と監視のための病原体のプロファイリング Nature Reviews. Microbiology. Jun, 2007 | Pubmed ID: 17487146 ヤングオーストラリアにおける肺結核のアウトブレイク The Medical Journal of Australia. Mar, 2007 | Pubmed ID: 17391086 お問い合わせ調査における結核菌の遺伝子型の有用性:意思決定分析 Tuberculosis (Edinburgh, Scotland). May, 2007 | Pubmed ID: 17161653 決定複雑さ程度と意思決定のサポート使用のタイプに影響を与えます。 AMIA ... Annual Symposium Proceedings / AMIA Symposium. AMIA Symposium. 2006 | Pubmed ID: 17238436 ニューサウスウェールズ州の結核菌の遺伝子型:州全体の試験の18ヶ月からの結果 New South Wales Public Health Bulletin. May-Jun, 2006 | Pubmed ID: 17036086 ウシ型結核菌亜Capraeによる尿結核の1例 Pathology. Aug, 2006 | Pubmed ID: 16916737 抗生物質耐性グラム陰性菌のスクリーニング。 The Lancet Infectious Diseases. Jun, 2006 | Pubmed ID: 16728313 ハンドヘルドコンピュータベースの意思決定支援は、クリティカルケアでの処方滞在と抗生物質の患者の長さを低減 Journal of the American Medical Informatics Association : JAMIA. Jul-Aug, 2005 | Pubmed ID: 15802478 Comparative Impact of Guidelines, Clinical Data, and Decision Support on Prescribing Decisions: an Interactive Web Experiment with Simulated Cases Journal of the American Medical Informatics Association : JAMIA. Jan-Feb, 2004 | Pubmed ID: 14527970 その臨床意思決定オートメーションから恩恵を受ける?タスクの複雑さのアプローチ。 International Journal of Medical Informatics. Jul, 2003 | Pubmed ID: 12909183 その臨床意思決定オートメーションから恩恵を受ける?タスクの複雑さのアプローチ。 Studies in Health Technology and Informatics. 2002 | Pubmed ID: 15460772 検出のマーカーの抗真菌薬剤耐性のカンジダ glabrataの全ゲノム シーケンス Chayanika Biswas*1, Sharon C-A. Chen*1,2,3, Catriona Halliday1,2, Elena Martinez1, Rebecca J. Rockett1, Qinning Wang1, Verlaine J. Timms1, Rajat Dhakal1, Rosemarie Sadsad1, Karina J. Kennedy4, Geoffrey Playford4,5, Deborah J. Marriott6, Monica A. Slavin7, Tania C. Sorrell1,3, Vitali Sintchenko1,2,3 1Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, 2Centre for Infectious Diseases and Microbiology Laboratory Services, ICPMR, 3Marie Bashir Institute for Infectious Diseases and Biosecurity, The University of Sydney, 4Department of Microbiology and Infectious Diseases, Canberra Hospital and Health Services, Australian National University Medical School, 5Infection Management Services, Australian National University Medical School, 6Department of Microbiology and Infectious Diseases, St. Vincent's Hospital, 7Department of Infectious Diseases, Peter MacCallum Cancer Centre JoVE 56714 Medicine マルチプレックスPCRおよび逆ラインブロットハイブリダイゼーションアッセイ(mPCR / RLB) Matthew V. N. O'Sullivan1, Fei Zhou1, Vitali Sintchenko1, Fanrong Kong1, Gwendolyn L. Gilbert1 1Centre for Infectious Diseases and Microbiology, University of Sydney JoVE 2781 Biology
検出のマーカーの抗真菌薬剤耐性のカンジダ glabrataの全ゲノム シーケンス Chayanika Biswas*1, Sharon C-A. Chen*1,2,3, Catriona Halliday1,2, Elena Martinez1, Rebecca J. Rockett1, Qinning Wang1, Verlaine J. Timms1, Rajat Dhakal1, Rosemarie Sadsad1, Karina J. Kennedy4, Geoffrey Playford4,5, Deborah J. Marriott6, Monica A. Slavin7, Tania C. Sorrell1,3, Vitali Sintchenko1,2,3 1Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, 2Centre for Infectious Diseases and Microbiology Laboratory Services, ICPMR, 3Marie Bashir Institute for Infectious Diseases and Biosecurity, The University of Sydney, 4Department of Microbiology and Infectious Diseases, Canberra Hospital and Health Services, Australian National University Medical School, 5Infection Management Services, Australian National University Medical School, 6Department of Microbiology and Infectious Diseases, St. Vincent's Hospital, 7Department of Infectious Diseases, Peter MacCallum Cancer Centre JoVE 56714 Medicine
マルチプレックスPCRおよび逆ラインブロットハイブリダイゼーションアッセイ(mPCR / RLB) Matthew V. N. O'Sullivan1, Fei Zhou1, Vitali Sintchenko1, Fanrong Kong1, Gwendolyn L. Gilbert1 1Centre for Infectious Diseases and Microbiology, University of Sydney JoVE 2781 Biology