Wei-Jun Qian

Publications

• Assessment of TMT Labeling Efficiency in Large-Scale Quantitative Proteomics: The Critical Effect of Sample PH
  ACS Omega. May, 2021  |   Pubmed ID: 34056417
• Repetitive Diacetyl Vapor Exposure Promotes Ubiquitin Proteasome Stress and Precedes Bronchiolitis Obliterans Pathology
  Archives of Toxicology. May, 2021  |   Pubmed ID: 34031698
• Altered β-Cell Prohormone Processing and Secretion in Type 1 Diabetes
  Diabetes. May, 2021  |   Pubmed ID: 33947721
• A Comprehensive Urine Proteome Database Generated From Patients With Various Renal Conditions and Prostate Cancer
  Frontiers in Medicine. 2021  |   Pubmed ID: 33928097
• Proteomic Profiling of the Substantia Nigra to Identify Determinants of Lewy Body Pathology and Dopaminergic Neuronal Loss
  Journal of Proteome Research. 05, 2021  |   Pubmed ID: 33900085
• Enhancing Top-Down Proteomics of Brain Tissue with FAIMS
  Journal of Proteome Research. 05, 2021  |   Pubmed ID: 33856812
• Stoichiometric Thiol Redox Proteomics for Quantifying Cellular Responses to Perturbations
  Antioxidants (Basel, Switzerland). Mar, 2021  |   Pubmed ID: 33807006
• Defective Insulin Receptor Signaling in HPSCs Skews Pluripotency and Negatively Perturbs Neural Differentiation
  The Journal of Biological Chemistry. Mar, 2021  |   Pubmed ID: 33667549
• Surfactant-assisted One-pot Sample Preparation for Label-free Single-cell Proteomics
  Communications Biology. Mar, 2021  |   Pubmed ID: 33649493
• Enhancement of Polyhydroxyalkanoate Production by Co-feeding Lignin Derivatives with Glycerol in Pseudomonas Putida KT2440
  Biotechnology for Biofuels. Jan, 2021  |   Pubmed ID: 33413621
• Characterization of Cellular Oxidative Stress Response by Stoichiometric Redox Proteomics
  American Journal of Physiology. Cell Physiology. 02, 2021  |   Pubmed ID: 33264075
• Meta-analysis of Peptides to Detect Protein Significance
  Statistics and Its Interface. 2020  |   Pubmed ID: 34055134
• Corrigendum: Near-Single-Cell Proteomics Profiling of the Proximal Tubular and Glomerulus of the Normal Human Kidney
  Frontiers in Medicine. 2020  |   Pubmed ID: 33511148
• Receptor-Driven ERK Pulses Reconfigure MAPK Signaling and Enable Persistence of Drug-Adapted BRAF-Mutant Melanoma Cells
  Cell Systems. Oct, 2020  |   Pubmed ID: 33113355
• Protein Thiol Oxidation in the Rat Lung Following E-cigarette Exposure
  Redox Biology. Oct, 2020  |   Pubmed ID: 33080441
• Near-Single-Cell Proteomics Profiling of the Proximal Tubular and Glomerulus of the Normal Human Kidney
  Frontiers in Medicine. 2020  |   Pubmed ID: 33072769
• Stochiometric Quantification of the Thiol Redox Proteome of Macrophages Reveals Subcellular Compartmentalization and Susceptibility to Oxidative Perturbations
  Redox Biology. Sep, 2020  |   Pubmed ID: 32750668
• Proteomic Tissue-Based Classifier for Early Prediction of Prostate Cancer Progression
  Cancers. May, 2020  |   Pubmed ID: 32429558
• Block Design with Common Reference Samples Enables Robust Large-Scale Label-Free Quantitative Proteome Profiling
  Journal of Proteome Research. 07, 2020  |   Pubmed ID: 32407631
• Development of Multiplexed Immuno-N-Terminomics to Reveal the Landscape of Proteolytic Processing in Early Embryogenesis of
  Analytical Chemistry. 04, 2020  |   Pubmed ID: 32196314
• Accurate Identification of Deamidation and Citrullination from Global Shotgun Proteomics Data Using a Dual-Search Delta Score Strategy
  Journal of Proteome Research. 04, 2020  |   Pubmed ID: 32175737
• Evaluation of the Cytotoxic and Cellular Proteome Impacts of Food-grade TiO (E171) Using Simulated Gastrointestinal Digestions and a Tri-culture Small Intestinal Epithelial Model
  NanoImpact. Jan, 2020  |   Pubmed ID: 32133427
• A Proteome-wide Assessment of the Oxidative Stress Paradigm for Metal and Metal-oxide Nanomaterials in Human Macrophages
  NanoImpact. Jan, 2020  |   Pubmed ID: 32133426
• Comprehensive Proteomics Analysis of Stressed Human Islets Identifies GDF15 As a Target for Type 1 Diabetes Intervention
  Cell Metabolism. 02, 2020  |   Pubmed ID: 31928885
• High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform
  Analytical Chemistry. 10, 2019  |   Pubmed ID: 31509397
• Increased β-cell Proliferation Before Immune Cell Invasion Prevents Progression of Type 1 Diabetes
  Nature Metabolism. May, 2019  |   Pubmed ID: 31423480
• Automated Nanoflow Two-Dimensional Reversed-Phase Liquid Chromatography System Enables In-Depth Proteome and Phosphoproteome Profiling of Nanoscale Samples
  Analytical Chemistry. 08, 2019  |   Pubmed ID: 31241912
• The Role of Proteomics in Assessing Beta-cell Dysfunction and Death in Type 1 Diabetes
  Expert Review of Proteomics. 07, 2019  |   Pubmed ID: 31232620
• Stable Acinar Progenitor Cell Model Identifies Treacle-Dependent Radioresistance
  Radiation Research. 08, 2019  |   Pubmed ID: 31141469
• Response to Comment on Sims Et Al. Proinsulin Secretion Is a Persistent Feature of Type 1 Diabetes. Diabetes Care 2019;42:258-264
  Diabetes Care. 05, 2019  |   Pubmed ID: 31010952
• Architecture and Subunit Arrangement of Native AMPA Receptors Elucidated by Cryo-EM
  Science (New York, N.Y.). 04, 2019  |   Pubmed ID: 30975770
• Discovery of Potential Pathways for Biological Conversion of Poplar Wood into Lipids by Co-fermentation of Strains
  Biotechnology for Biofuels. 2019  |   Pubmed ID: 30923568
• Boosting to Amplify Signal with Isobaric Labeling (BASIL) Strategy for Comprehensive Quantitative Phosphoproteomic Characterization of Small Populations of Cells
  Analytical Chemistry. May, 2019  |   Pubmed ID: 30843680
• Improving Mitochondrial Function with SS-31 Reverses Age-related Redox Stress and Improves Exercise Tolerance in Aged Mice
  Free Radical Biology & Medicine. 04, 2019  |   Pubmed ID: 30597195
• Carrier-Assisted Single-Tube Processing Approach for Targeted Proteomics Analysis of Low Numbers of Mammalian Cells
  Analytical Chemistry. 01, 2019  |   Pubmed ID: 30557009
• Proinsulin Secretion Is a Persistent Feature of Type 1 Diabetes
  Diabetes Care. 02, 2019  |   Pubmed ID: 30530850
• Genomics and Biochemistry Investigation on the Metabolic Pathway of Milled Wood and Alkali Lignin-derived Aromatic Metabolites of SP-35
  Biotechnology for Biofuels. 2018  |   Pubmed ID: 30603046
• Nanoproteomics Comes of Age
  Expert Review of Proteomics. 11, 2018  |   Pubmed ID: 30375896
• Insulin Receptor-mediated Signaling Regulates Pluripotency Markers and Lineage Differentiation
  Molecular Metabolism. 12, 2018  |   Pubmed ID: 30316806
• Facile Carrier-assisted Targeted Mass Spectrometric Approach for Proteomic Analysis of Low Numbers of Mammalian Cells
  Communications Biology. 2018  |   Pubmed ID: 30271983
• Nanowell-mediated Two-dimensional Liquid Chromatography Enables Deep Proteome Profiling of <1000 Mammalian Cells
  Chemical Science. Sep, 2018  |   Pubmed ID: 30210768
• Serum Biomarkers for Diagnosis and Prediction of Type 1 Diabetes
  Translational Research : the Journal of Laboratory and Clinical Medicine. 11, 2018  |   Pubmed ID: 30144424
• Mass Spectrometry-based Proteomics for System-level Characterization of Biological Responses to Engineered Nanomaterials
  Analytical and Bioanalytical Chemistry. Sep, 2018  |   Pubmed ID: 29947897
• Spatially Resolved Proteome Mapping of Laser Capture Microdissected Tissue with Automated Sample Transfer to Nanodroplets
  Molecular & Cellular Proteomics : MCP. Sep, 2018  |   Pubmed ID: 29941660
• Fatiguing Contractions Increase Protein S-glutathionylation Occupancy in Mouse Skeletal Muscle
  Redox Biology. 07, 2018  |   Pubmed ID: 29857311
• Urinary Virome Perturbations in Kidney Transplantation
  Frontiers in Medicine. 2018  |   Pubmed ID: 29725592
• Optimization for Peptide Sample Preparation for Urine Peptidomics
  Methods in Molecular Biology (Clifton, N.J.). Apr, 2018  |   Pubmed ID: 29623538
• Targeted Quantification of Phosphorylation Dynamics in the Context of EGFR-MAPK Pathway
  Analytical Chemistry. 04, 2018  |   Pubmed ID: 29584399
• Subnanogram Proteomics: Impact of LC Column Selection, MS Instrumentation and Data Analysis Strategy on Proteome Coverage for Trace Samples
  International Journal of Mass Spectrometry. Apr, 2018  |   Pubmed ID: 29576737
• Nanodroplet Processing Platform for Deep and Quantitative Proteome Profiling of 10-100 Mammalian Cells
  Nature Communications. 02, 2018  |   Pubmed ID: 29491378
• Multiplexed Targeted Mass Spectrometry Assays for Prostate Cancer-associated Urinary Proteins
  Oncotarget. Nov, 2017  |   Pubmed ID: 29254211
• LC-SRM-Based Targeted Quantification of Urinary Protein Biomarkers
  Methods in Molecular Biology (Clifton, N.J.). Nov, 2017  |   Pubmed ID: 29116567
• -Nitrosylation Inhibits the Kinase Activity of Tomato Phosphoinositide-dependent Kinase 1 (PDK1)
  The Journal of Biological Chemistry. 12, 2017  |   Pubmed ID: 28972151
• Functional Enzyme-Based Approach for Linking Microbial Community Functions with Biogeochemical Process Kinetics
  Environmental Science & Technology. Oct, 2017  |   Pubmed ID: 28891285
• Quantification of Mutant SPOP Proteins in Prostate Cancer Using Mass Spectrometry-based Targeted Proteomics
  Journal of Translational Medicine. Aug, 2017  |   Pubmed ID: 28810879
• Advances in Microscale Separations Towards Nanoproteomics Applications
  Journal of Chromatography. A. Nov, 2017  |   Pubmed ID: 28765000
• Deep-Dive Targeted Quantification for Ultrasensitive Analysis of Proteins in Nondepleted Human Blood Plasma/Serum and Tissues
  Analytical Chemistry. Sep, 2017  |   Pubmed ID: 28724286
• Targeted Proteomic Assays for Quantitation of Proteins Identified by Proteogenomic Analysis of Ovarian Cancer
  Scientific Data. 07, 2017  |   Pubmed ID: 28722704
• Quantitative Proteomics Identifies Altered O-GlcNAcylation of Structural, Synaptic and Memory-associated Proteins in Alzheimer's Disease
  The Journal of Pathology. Sep, 2017  |   Pubmed ID: 28657654
• Targeted Quantification of Functional Enzyme Dynamics in Environmental Samples for Microbially Mediated Biogeochemical Processes
  Environmental Microbiology Reports. Oct, 2017  |   Pubmed ID: 28618201
• Quantitative Proteomic Characterization of Redox-dependent Post-translational Modifications on Protein Cysteines
  Molecular BioSystems. May, 2017  |   Pubmed ID: 28357434
• Biodegradation of Alkaline Lignin by L1
  Biotechnology for Biofuels. 2017  |   Pubmed ID: 28239416
• An Efficient Method for Native Protein Purification in the Selected Range from Prostate Cancer Tissue Digests
  Chinese Clinical Oncology. Dec, 2016  |   Pubmed ID: 28061542
• Conservation of Protein Abundance Patterns Reveals the Regulatory Architecture of the EGFR-MAPK Pathway
  Science Signaling. 07, 2016  |   Pubmed ID: 27405981
• Advances in Targeted Proteomics and Applications to Biomedical Research
  Proteomics. 08, 2016  |   Pubmed ID: 27302376
• Mining the Human Urine Proteome for Monitoring Renal Transplant Injury
  Kidney International. 06, 2016  |   Pubmed ID: 27165815
• The Current State of the Art of Quantitative Phosphoproteomics and Its Applications to Diabetes Research
  Expert Review of Proteomics. 2016  |   Pubmed ID: 26960075
• 9-Fluorenylmethyl (Fm) Disulfides: Biomimetic Precursors for Persulfides
  Organic Letters. Mar, 2016  |   Pubmed ID: 26870874
• Contributions of Immunoaffinity Chromatography to Deep Proteome Profiling of Human Biofluids
  Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. May, 2016  |   Pubmed ID: 26868616
• Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays
  Methods in Molecular Biology (Clifton, N.J.). 2016  |   Pubmed ID: 26867747
• SNaPP: Simplified Nanoproteomics Platform for Reproducible Global Proteomic Analysis of Nanogram Protein Quantities
  Endocrinology. Mar, 2016  |   Pubmed ID: 26745641
• Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays
  Clinical Chemistry. Jan, 2016  |   Pubmed ID: 26719571
• SerpinB1 Promotes Pancreatic β Cell Proliferation
  Cell Metabolism. Jan, 2016  |   Pubmed ID: 26701651
• Quantitative Profiling of Protein S-Glutathionylation Reveals Redox-Dependent Regulation of Macrophage Function During Nanoparticle-Induced Oxidative Stress
  ACS Nano. Jan, 2016  |   Pubmed ID: 26700264
• The Clinical Impact of Recent Advances in LC-MS for Cancer Biomarker Discovery and Verification
  Expert Review of Proteomics. 2016  |   Pubmed ID: 26581546
• The Measurement of Reversible Redox Dependent Post-translational Modifications and Their Regulation of Mitochondrial and Skeletal Muscle Function
  Frontiers in Physiology. 2015  |   Pubmed ID: 26635632
• Preserved DNA Damage Checkpoint Pathway Protects Against Complications in Long-Standing Type 1 Diabetes
  Cell Metabolism. Aug, 2015  |   Pubmed ID: 26244933
• Compensatory Islet Response to Insulin Resistance Revealed by Quantitative Proteomics
  Journal of Proteome Research. Aug, 2015  |   Pubmed ID: 26151086
• Analytical Platform Evaluation for Quantification of ERG in Prostate Cancer Using Protein and MRNA Detection Methods
  Journal of Translational Medicine. Feb, 2015  |   Pubmed ID: 25889691
• Sensitive Targeted Quantification of ERK Phosphorylation Dynamics and Stoichiometry in Human Cells Without Affinity Enrichment
  Analytical Chemistry. Jan, 2015  |   Pubmed ID: 25517423
• The Identification of Novel Potential Injury Mechanisms and Candidate Biomarkers in Renal Allograft Rejection by Quantitative Proteomics
  Molecular & Cellular Proteomics : MCP. Feb, 2014  |   Pubmed ID: 33498143
• Perturbations in the Urinary Exosome in Transplant Rejection
  Frontiers in Medicine. 2014  |   Pubmed ID: 25593928
• Proteomic Approaches for Site-specific O-GlcNAcylation Analysis
  Bioanalysis. 2014  |   Pubmed ID: 25411699
• Brain Insulin Lowers Circulating BCAA Levels by Inducing Hepatic BCAA Catabolism
  Cell Metabolism. Nov, 2014  |   Pubmed ID: 25307860
• Antibody-independent Targeted Quantification of TMPRSS2-ERG Fusion Protein Products in Prostate Cancer
  Molecular Oncology. Oct, 2014  |   Pubmed ID: 25266362
• Expediting SRM Assay Development for Large-scale Targeted Proteomics Experiments
  Journal of Proteome Research. Oct, 2014  |   Pubmed ID: 25145539
• A Method to Determine Lysine Acetylation Stoichiometries
  International Journal of Proteomics. 2014  |   Pubmed ID: 25143833
• Proteome-wide Light/dark Modulation of Thiol Oxidation in Cyanobacteria Revealed by Quantitative Site-specific Redox Proteomics
  Molecular & Cellular Proteomics : MCP. Dec, 2014  |   Pubmed ID: 25118246
• Detecting Differential Protein Expression in Large-scale Population Proteomics
  Bioinformatics (Oxford, England). Oct, 2014  |   Pubmed ID: 24928210
• High and Low Doses of Ionizing Radiation Induce Different Secretome Profiles in a Human Skin Model
  PloS One. 2014  |   Pubmed ID: 24642900
• Optimization for Peptide Sample Preparation for Urine Peptidomics
  Clinical Proteomics. Feb, 2014  |   Pubmed ID: 24568099
• Resin-assisted Enrichment of Thiols As a General Strategy for Proteomic Profiling of Cysteine-based Reversible Modifications
  Nature Protocols. Jan, 2014  |   Pubmed ID: 24336471
• The Identification of Novel Potential Injury Mechanisms and Candidate Biomarkers in Renal Allograft Rejection by Quantitative Proteomics
  Molecular & Cellular Proteomics : MCP. Feb, 2014  |   Pubmed ID: 24335474
• Proteomic Identification and Quantification of S-glutathionylation in Mouse Macrophages Using Resin-assisted Enrichment and Isobaric Labeling
  Free Radical Biology & Medicine. Feb, 2014  |   Pubmed ID: 24333276
• A Highly Sensitive Targeted Mass Spectrometric Assay for Quantification of AGR2 Protein in Human Urine and Serum
  Journal of Proteome Research. Feb, 2014  |   Pubmed ID: 24251762
• Impact of Alg3 Gene Deletion on Growth, Development, Pigment Production, Protein Secretion, and Functions of Recombinant Trichoderma Reesei Cellobiohydrolases in Aspergillus Niger
  Fungal Genetics and Biology : FG & B. Dec, 2013  |   Pubmed ID: 24076077
• Long-gradient Separations Coupled with Selected Reaction Monitoring for Highly Sensitive, Large Scale Targeted Protein Quantification in a Single Analysis
  Analytical Chemistry. Oct, 2013  |   Pubmed ID: 24004026
• Resin-assisted Enrichment of N-terminal Peptides for Characterizing Proteolytic Processing
  Analytical Chemistry. Jul, 2013  |   Pubmed ID: 23772796
• Targeted Quantification of Low Ng/mL Level Proteins in Human Serum Without Immunoaffinity Depletion
  Journal of Proteome Research. Jul, 2013  |   Pubmed ID: 23763644
• Evaluation of Selected Binding Domains for the Analysis of Ubiquitinated Proteomes
  Journal of the American Society for Mass Spectrometry. Aug, 2013  |   Pubmed ID: 23649778
• Trauma-associated Human Neutrophil Alterations Revealed by Comparative Proteomics Profiling
  Proteomics. Clinical Applications. Aug, 2013  |   Pubmed ID: 23589343
• Determination of Burn Patient Outcome by Large-scale Quantitative Discovery Proteomics
  Critical Care Medicine. Jun, 2013  |   Pubmed ID: 23507713
• Synthesis and Application of an Environmentally Insensitive Cy3-based Arsenical Fluorescent Probe to Identify Adaptive Microbial Responses Involving Proximal Dithiol Oxidation
  Journal of the American Chemical Society. Mar, 2013  |   Pubmed ID: 23379730
• Liver-Derived Systemic Factors Drive β Cell Hyperplasia in Insulin-Resistant States
  Cell Reports. Jan, 2013  |   Pubmed ID: 23375376
• In-source Fragmentation and the Sources of Partially Tryptic Peptides in Shotgun Proteomics
  Journal of Proteome Research. Feb, 2013  |   Pubmed ID: 23268687
• Quantitative Site-specific Reactivity Profiling of S-nitrosylation in Mouse Skeletal Muscle Using Cysteinyl Peptide Enrichment Coupled with Mass Spectrometry
  Free Radical Biology & Medicine. Dec, 2012  |   Pubmed ID: 23277143
• Antibody-free, Targeted Mass-spectrometric Approach for Quantification of Proteins at Low Picogram Per Milliliter Levels in Human Plasma/serum
  Proceedings of the National Academy of Sciences of the United States of America. Sep, 2012  |   Pubmed ID: 22949669
• Analysis of Serum Total and Free PSA Using Immunoaffinity Depletion Coupled to SRM: Correlation with Clinical Immunoassay Tests
  Journal of Proteomics. Aug, 2012  |   Pubmed ID: 22846433
• Advancing the Sensitivity of Selected Reaction Monitoring-based Targeted Quantitative Proteomics
  Proteomics. Apr, 2012  |   Pubmed ID: 22577010
• Identification of Phosphorylated Butyrylcholinesterase in Human Plasma Using Immunoaffinity Purification and Mass Spectrometry
  Analytica Chimica Acta. Apr, 2012  |   Pubmed ID: 22444575
• Simple Sodium Dodecyl Sulfate-assisted Sample Preparation Method for LC-MS-based Proteomics Applications
  Analytical Chemistry. Mar, 2012  |   Pubmed ID: 22339560
• Mapping N-linked Glycosylation Sites in the Secretome and Whole Cells of Aspergillus Niger Using Hydrazide Chemistry and Mass Spectrometry
  Journal of Proteome Research. Jan, 2012  |   Pubmed ID: 22136231
• IgY14 and SuperMix Immunoaffinity Separations Coupled with Liquid Chromatography-mass Spectrometry for Human Plasma Proteomics Biomarker Discovery
  Methods (San Diego, Calif.). Feb, 2012  |   Pubmed ID: 21925605
• 18O-labeled Proteome Reference As Global Internal Standards for Targeted Quantification by Selected Reaction Monitoring-mass Spectrometry
  Molecular & Cellular Proteomics : MCP. Dec, 2011  |   Pubmed ID: 21988777
• Quantitative Proteomics Analysis of Adsorbed Plasma Proteins Classifies Nanoparticles with Different Surface Properties and Size
  Proteomics. Dec, 2011  |   Pubmed ID: 21956884
• Unraveling Pancreatic Islet Biology by Quantitative Proteomics
  Expert Review of Proteomics. Aug, 2011  |   Pubmed ID: 21819304
• Identification of C-type Heme-containing Peptides Using Nonactivated Immobilized Metal Affinity Chromatography Resin Enrichment and Higher-energy Collisional Dissociation
  Analytical Chemistry. Oct, 2011  |   Pubmed ID: 21740036
• Liquid Chromatography-mass Spectrometry-based Quantitative Proteomics
  The Journal of Biological Chemistry. Jul, 2011  |   Pubmed ID: 21632532
• Trypsin-catalyzed Oxygen-18 Labeling for Quantitative Proteomics
  Methods in Molecular Biology (Clifton, N.J.). 2011  |   Pubmed ID: 21604114
• Enhanced Sensitivity for Selected Reaction Monitoring Mass Spectrometry-based Targeted Proteomics Using a Dual Stage Electrodynamic Ion Funnel Interface
  Molecular & Cellular Proteomics : MCP. Feb, 2011  |   Pubmed ID: 20410378
• Improved LC-MS/MS Spectral Counting Statistics by Recovering Low-scoring Spectra Matched to Confidently Identified Peptide Sequences
  Journal of Proteome Research. Nov, 2010  |   Pubmed ID: 20812748
• Clinical Microfluidics for Neutrophil Genomics and Proteomics
  Nature Medicine. Sep, 2010  |   Pubmed ID: 20802500
• Plasma Proteome Response to Severe Burn Injury Revealed by 18O-labeled "universal" Reference-based Quantitative Proteomics
  Journal of Proteome Research. Sep, 2010  |   Pubmed ID: 20698492
• CD90/THY1 is Overexpressed in Prostate Cancer-associated Fibroblasts and Could Serve As a Cancer Biomarker
  Modern Pathology : an Official Journal of the United States and Canadian Academy of Pathology, Inc. Oct, 2010  |   Pubmed ID: 20562849
• Shotgun Proteomics Identifies Proteins Specific for Acute Renal Transplant Rejection
  Proteomics. Clinical Applications. Jan, 2010  |   Pubmed ID: 20543976
• Sensitive Immunoassays of Nitrated Fibrinogen in Human Biofluids
  Talanta. Jun, 2010  |   Pubmed ID: 20441955
• Quantitative Analysis of Cell Surface Membrane Proteins Using Membrane-impermeable Chemical Probe Coupled with 18O Labeling
  Journal of Proteome Research. May, 2010  |   Pubmed ID: 20380418
• Region-specific Protein Abundance Changes in the Brain of MPTP-induced Parkinson's Disease Mouse Model
  Journal of Proteome Research. Mar, 2010  |   Pubmed ID: 20155936
• Endogenous 3,4-dihydroxyphenylalanine and Dopaquinone Modifications on Protein Tyrosine: Links to Mitochondrially Derived Oxidative Stress Via Hydroxyl Radical
  Molecular & Cellular Proteomics : MCP. Jun, 2010  |   Pubmed ID: 20124354
• Mapping Protein Abundance Patterns in the Brain Using Voxelation Combined with Liquid Chromatography and Mass Spectrometry
  Methods (San Diego, Calif.). Feb, 2010  |   Pubmed ID: 19654045
• N-terminal Enrichment: Developing a Protocol to Detect Specific Proteolytic Fragments
  Journal of Biomolecular Techniques : JBT. Dec, 2009  |   Pubmed ID: 19949699
• Mouse-specific Tandem IgY7-SuperMix Immunoaffinity Separations for Improved LC-MS/MS Coverage of the Plasma Proteome
  Journal of Proteome Research. Nov, 2009  |   Pubmed ID: 19722698
• A Statistical Framework for Protein Quantitation in Bottom-up MS-based Proteomics
  Bioinformatics (Oxford, England). Aug, 2009  |   Pubmed ID: 19535538
• An Extensive Survey of Tyrosine Phosphorylation Revealing New Sites in Human Mammary Epithelial Cells
  Journal of Proteome Research. Aug, 2009  |   Pubmed ID: 19534553
• Dual Spatial Maps of Transcript and Protein Abundance in the Mouse Brain
  Expert Review of Proteomics. Jun, 2009  |   Pubmed ID: 19489697
• A Simple Procedure for Effective Quenching of Trypsin Activity and Prevention of 18O-labeling Back-exchange
  Journal of Proteome Research. May, 2009  |   Pubmed ID: 19222237
• Large-scale Multiplexed Quantitative Discovery Proteomics Enabled by the Use of an (18)O-labeled "universal" Reference Sample
  Journal of Proteome Research. Jan, 2009  |   Pubmed ID: 19053531
• Quantitative Phosphoproteome Analysis of Lysophosphatidic Acid Induced Chemotaxis Applying Dual-step (18)O Labeling Coupled with Immobilized Metal-ion Affinity Chromatography
  Journal of Proteome Research. Oct, 2008  |   Pubmed ID: 18785766
• Enhanced Detection of Low Abundance Human Plasma Proteins Using a Tandem IgY12-SuperMix Immunoaffinity Separation Strategy
  Molecular & Cellular Proteomics : MCP. Oct, 2008  |   Pubmed ID: 18632595
• Characterization of the Mouse Pancreatic Islet Proteome and Comparative Analysis with Other Mouse Tissues
  Journal of Proteome Research. Aug, 2008  |   Pubmed ID: 18570455
• DAnTE: a Statistical Tool for Quantitative Analysis of -omics Data
  Bioinformatics (Oxford, England). Jul, 2008  |   Pubmed ID: 18453552
• Quantitative Proteome Mapping of Nitrotyrosines
  Methods in Enzymology. 2008  |   Pubmed ID: 18423218
• Proteome-wide Identification of Proteins and Their Modifications with Decreased Ambiguities and Improved False Discovery Rates Using Unique Sequence Tags
  Analytical Chemistry. Mar, 2008  |   Pubmed ID: 18271604
• Mitochondrial Dysfunction, Oxidative Stress, and Apoptosis Revealed by Proteomic and Transcriptomic Analyses of the Striata in Two Mouse Models of Parkinson's Disease
  Journal of Proteome Research. Feb, 2008  |   Pubmed ID: 18173235
• Elimination of Systematic Mass Measurement Errors in Liquid Chromatography-mass Spectrometry Based Proteomics Using Regression Models and a Priori Partial Knowledge of the Sample Content
  Analytical Chemistry. Feb, 2008  |   Pubmed ID: 18163597
• Application of Proteomics in the Discovery of Candidate Protein Biomarkers in a Diabetes Autoantibody Standardization Program Sample Subset
  Journal of Proteome Research. Feb, 2008  |   Pubmed ID: 18092746
• Capillary-based Multi Nanoelectrospray Emitters: Improvements in Ion Transmission Efficiency and Implementation with Capillary Reversed-phase LC-ESI-MS
  Analytical Chemistry. Jan, 2008  |   Pubmed ID: 18044958
• Accurate Mass Measurements in Proteomics
  Chemical Reviews. Aug, 2007  |   Pubmed ID: 17649984
• A Genome-scale Map of Expression for a Mouse Brain Section Obtained Using Voxelation
  Physiological Genomics. Aug, 2007  |   Pubmed ID: 17504947
• A Method for Selective Enrichment and Analysis of Nitrotyrosine-containing Peptides in Complex Proteome Samples
  Journal of Proteome Research. Jun, 2007  |   Pubmed ID: 17497906
• Profiling Signaling Polarity in Chemotactic Cells
  Proceedings of the National Academy of Sciences of the United States of America. May, 2007  |   Pubmed ID: 17494752
• Quantitative Analysis of Human Immunodeficiency Virus Type 1-infected CD4+ Cell Proteome: Dysregulated Cell Cycle Progression and Nuclear Transport Coincide with Robust Virus Production
  Journal of Virology. Jul, 2007  |   Pubmed ID: 17494070
• The Use of a Quantitative Cysteinyl-peptide Enrichment Technology for High-throughput Quantitative Proteomics
  Methods in Molecular Biology (Clifton, N.J.). 2007  |   Pubmed ID: 17484113
• Quantitative Proteomic Approaches for Studying Phosphotyrosine Signaling
  Expert Review of Proteomics. Feb, 2007  |   Pubmed ID: 17288512
• Spatial Mapping of Protein Abundances in the Mouse Brain by Voxelation Integrated with High-throughput Liquid Chromatography-mass Spectrometry
  Genome Research. Mar, 2007  |   Pubmed ID: 17255552
• Characterization of the Human Pancreatic Islet Proteome by Two-dimensional LC/MS/MS
  Journal of Proteome Research. Dec, 2006  |   Pubmed ID: 17137336
• Advances and Challenges in Liquid Chromatography-mass Spectrometry-based Proteomics Profiling for Clinical Applications
  Molecular & Cellular Proteomics : MCP. Oct, 2006  |   Pubmed ID: 16887931
• Evaluation of Multiprotein Immunoaffinity Subtraction for Plasma Proteomics and Candidate Biomarker Discovery Using Mass Spectrometry
  Molecular & Cellular Proteomics : MCP. Nov, 2006  |   Pubmed ID: 16854842
• Endogenously Nitrated Proteins in Mouse Brain: Links to Neurodegenerative Disease
  Biochemistry. Jul, 2006  |   Pubmed ID: 16800626
• High Dynamic Range Characterization of the Trauma Patient Plasma Proteome
  Molecular & Cellular Proteomics : MCP. Oct, 2006  |   Pubmed ID: 16684767
• Characterization of the Mouse Brain Proteome Using Global Proteomic Analysis Complemented with Cysteinyl-peptide Enrichment
  Journal of Proteome Research. Feb, 2006  |   Pubmed ID: 16457602
• Normalization Approaches for Removing Systematic Biases Associated with Mass Spectrometry and Label-free Proteomics
  Journal of Proteome Research. Feb, 2006  |   Pubmed ID: 16457593
• Advances in Proteomics Data Analysis and Display Using an Accurate Mass and Time Tag Approach
  Mass Spectrometry Reviews. May-Jun, 2006  |   Pubmed ID: 16429408
• Development and Evaluation of a Micro- and Nanoscale Proteomic Sample Preparation Method
  Journal of Proteome Research. Nov-Dec, 2005  |   Pubmed ID: 16335993
• Human Plasma N-glycoproteome Analysis by Immunoaffinity Subtraction, Hydrazide Chemistry, and Mass Spectrometry
  Journal of Proteome Research. Nov-Dec, 2005  |   Pubmed ID: 16335952
• Utilizing Human Blood Plasma for Proteomic Biomarker Discovery
  Journal of Proteome Research. Jul-Aug, 2005  |   Pubmed ID: 16083256
• Quantitative Proteome Analysis of Human Plasma Following in Vivo Lipopolysaccharide Administration Using 16O/18O Labeling and the Accurate Mass and Time Tag Approach
  Molecular & Cellular Proteomics : MCP. May, 2005  |   Pubmed ID: 15753121
• Improved Proteome Coverage by Using High Efficiency Cysteinyl Peptide Enrichment: the Human Mammary Epithelial Cell Proteome
  Proteomics. Apr, 2005  |   Pubmed ID: 15742320
• Probability-based Evaluation of Peptide and Protein Identifications from Tandem Mass Spectrometry and SEQUEST Analysis: the Human Proteome
  Journal of Proteome Research. Jan-Feb, 2005  |   Pubmed ID: 15707357
• Targeted Comparative Proteomics by Liquid Chromatography-tandem Fourier Ion Cyclotron Resonance Mass Spectrometry
  Analytical Chemistry. Jan, 2005  |   Pubmed ID: 15649034
• Comparative Proteome Analyses of Human Plasma Following in Vivo Lipopolysaccharide Administration Using Multidimensional Separations Coupled with Tandem Mass Spectrometry
  Proteomics. Feb, 2005  |   Pubmed ID: 15627965
• High-throughput Proteomics Using Fourier Transform Ion Cyclotron Resonance Mass Spectrometry
  Expert Review of Proteomics. Jun, 2004  |   Pubmed ID: 15966802
• Simultaneous Monitoring of Zn2+ Secretion and Intracellular Ca2+ from Islets and Islet Cells by Fluorescence Microscopy
  BioTechniques. Dec, 2004  |   Pubmed ID: 15597541
• High-throughput Comparative Proteome Analysis Using a Quantitative Cysteinyl-peptide Enrichment Technology
  Analytical Chemistry. Sep, 2004  |   Pubmed ID: 15362891
• Phosphoprotein Isotope-coded Solid-phase Tag Approach for Enrichment and Quantitative Analysis of Phosphopeptides from Complex Mixtures
  Analytical Chemistry. Oct, 2003  |   Pubmed ID: 14714534
• Late-life Restoration of Mitochondrial Function Reverses Cardiac Dysfunction in Old Mice
  ELife.   |   Pubmed ID: 32648542