Waiting
Procesando inicio de sesión ...

Trial ends in Request Full Access Tell Your Colleague About Jove
Journal / Immunology and Infection / High-Throughput Transcriptome Analysis for…
JoVE Journal
Immunology and Infection
Author Produced

Se requiere una suscripción a JoVE para ver este contenido.

JoVE Journal Immunology and Infection
High-Throughput Transcriptome Analysis for Investigating Host-Pathogen Interactions
Bacteriophage Effectiveness for Biocontrol of Foodborne Pathogens Evaluated via High-Throughput Settings
Journal (Immunology and Infection)
Bacteriophage Effectiveness for Biocontrol of Foodborne Pathogens Evaluated via High-Throughput Settings
A Cryo-pulverization Protocol for Processing Mouse Paws to Evaluate Molecular Pathways of Tissue Inflammation in a Collagen Induced Arthritis Model
Journal (Immunology and Infection)
A Cryo-pulverization Protocol for Processing Mouse Paws to Evaluate Molecular Pathways of Tissue Inflammation in a Collagen Induced Arthritis Model
 

High-Throughput Transcriptome Analysis for Investigating Host-Pathogen Interactions

Article DOI: 10.3791/62324-v • 14:58 min • March 5th, 2022
March 5th, 2022 •
1,2, 3, 2,3, 3, 2,3, 2,3,4
1Laboratory of Pathology of Infectious Diseases, Department of Pathology, Medical School, University of São Paulo, 2Scientific Platform Pasteur USP, 3Department of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, 4Hospital Israelita Albert Einstein

Capítulos

Resumen
Automatic Translation

The protocol presented here describes a complete pipeline to analyze RNA-sequencing transcriptome data from raw reads to functional analysis, including quality control and preprocessing steps to advanced statistical analytical approaches.

Tags

High-throughput Transcriptome Analysis Host-pathogen Interactions Quality Control Low-quality Reads Adapter Sequences Sequencing Annotations Reference Genomes Genes Statistical Analysis Co-expression Analysis Differentially Expressed Genes Co-expression Modules Molecular Degree Of Perturbation Analysis Functional Analysis Biological Functions Tools Linux System Docker Container Blood Samples RNA Sequencing Chikungunya Virus Docker Installation
Read Article

Get cutting-edge science videos from JoVE sent straight to your inbox every month.

Waiting X
Simple Hit Counter