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Biology
Identification globale des réseaux d’interaction co-translationnelle par profilage sélectif des r...
Identification globale des réseaux d’interaction co-translationnelle par profilage sélectif des r...
JoVE Journal
Biology
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JoVE Journal Biology
Global Identification of Co-Translational Interaction Networks by Selective Ribosome Profiling

Identification globale des réseaux d’interaction co-translationnelle par profilage sélectif des ribosomes

Full Text
3,045 Views
06:58 min
October 7, 2021

DOI: 10.3791/62878-v

Johannes Venezian1, Hila Zilberman1, Ayala Shiber1

1Faculty of Biology,Technion - Israel Institute of Technology

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Please note that some of the translations on this page are AI generated. Click here for the English version.

Overview

This study explores the crucial role of co-translational interactions in nascent-chain modifications, targeting, folding, and assembly pathways using selective ribosome profiling. The model organism employed is the eukaryote Saccharomyces cerevisiae.

Key Study Components

Research Area

  • Co-translational interactions
  • Protein targeting and folding
  • Ribosome profiling

Background

  • Nascent-chain modifications are vital for protein functionality.
  • Understanding these processes can illuminate disease mechanisms.
  • Selective ribosome profiling uniquely captures these interactions in vivo.

Methods Used

  • Selective ribosome profiling
  • Saccharomyces cerevisiae
  • RNA extraction, western blotting, deep sequencing

Main Results

  • Identified co-translational interactions and binding with ribosome-associated chaperones.
  • Demonstrated ribosome occupancy along open reading frames.
  • Established the method's validity through various assays.

Conclusions

  • The study demonstrates the importance of co-translational interactions for maintaining a functional proteome.
  • This approach is relevant for understanding protein synthesis and associated diseases.

Frequently Asked Questions

What is selective ribosome profiling?
Selective ribosome profiling is a method for direct, in vivo analysis of ribosome interactions during protein translation.
Why is Saccharomyces cerevisiae used as a model organism?
It serves as a well-studied eukaryotic model that simplifies the analysis of complex cellular processes.
How does this study contribute to our understanding of diseases?
By elucidating co-translational interactions, this research provides insights into the mechanisms behind protein folding and associated diseases.
What technologies are utilized in this research?
The study employs techniques including selective ribosome profiling, RNA extraction, and deep sequencing for analysis.
What are the implications of co-translational interactions?
These interactions are crucial for ensuring the proper targeting and folding of proteins, impacting their functional roles.
What experimental approaches were taken?
The researchers used immuno-purification and western blot validation, among other methods, to analyze the interactions.

Les interactions co-traductionnelles jouent un rôle crucial dans les modifications de la chaîne naissante, le ciblage, le pliage et les voies d’assemblage. Nous décrivons ici le profilage sélectif des ribosomes, une méthode d’analyse directe in vivo de ces interactions dans le modèle eucaryote Saccharomyces cerevisiae.

Les interactions co-traductionnelles jouent un rôle crucial dans les modifications naissantes de la chaîne ciblant les voies de pliage et d’assemblage. Nous décrivons ici le profilage sélectif des ribosomes, une méthode d’analyse directe in vivo de ces interactions dans le modèle eucaryote Saccaromyces cerevisiae. Le profilage sélectif des ribosomes est la seule méthode à ce jour qui capture et caractérise les interactions co-translationnelles in vivo de manière directe.

Le profilage sélectif des ribosomes permet un profilage global de tous les facteurs et interactions avec la traduction des ribosomes en résolution proche du codon. Commencez par collecter les cellules de levure construites contenant les protéines marquées souhaitées. Effectuer la lyse cellulaire à l’aide d’un broyage cryogénique dans un broyeur mélangeur deux fois pendant deux minutes à 30 Hertz.

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