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15.8:

מוטגנזה במבחנה

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In-vitro Mutagenesis

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מדענים יכולים להשבית או למחוק גן בנוקאאוט בחיות לרוב בעכברים, כדי ללמוד יותר על תפקודו של הגן, בדרך כלל על ידי החלפתו בוקטור הכוונה, פיסת דנ”א מהונדסת. לוקטור ההכוונה יש רצפים שהם הומולוגיים, זהים לרצפים לפני הגן ואחריו. בדרך כלל הוא מכיל גם סמן ברירה חיובית, כגון הגן של עמידת לנאומיצין, NeoR, במרכזו, וסמן ברירה שלילית, כמו הגן של תימידין קינאז, TK, בקצה אחד.כשהוא מוחדר לתוך תאי גזע עובריים, הוא מחליף את הגן דרך רקומבינציה הומולוגית, אשר מתרחשת באופן טבעי בין מתיחות הדנ”א עם רצפים דומים. תאים שבהם הוחלף הגן כראוי יכילו את הסמן החיובי, אך לא את הסמן השלילי, שיאפשר לזהות אותם בתרבית. תאים אלה אז מוכנסים לתוך העובר של העכבר ומושתלים לתוך הרחם של הנקבה.לעכבר שנוצר יש שילוב של תאים נורמליים ותאים עם הגן המחוק בכרומוזום אחד. עכברים אלה אז מתרבים ו‫יוצרים מה שנקרא עכברי נוקאאוט, שהם הומוזיגוטיים לגן המחוק בכל התאים.

15.8:

מוטגנזה במבחנה

To learn more about the function of a gene, researchers can observe what happens when the gene is inactivated or “knocked out,” by creating genetically engineered knockout animals. Knockout mice have been particularly useful as models for human diseases such as cancer, Parkinson’s disease, and diabetes.

The Process

Genes can be randomly knocked out, or specific genes can be targeted. To knock out a particular gene, an engineered piece of DNA called a targeting vector is used to replace the normal gene, thereby inactivating it.

Targeting vectors have sequences on each end that are identical—or homologous— to the sequences flanking each side of the gene of interest. These homologous sequences allow the targeting vector to replace the gene through homologous recombination—a process that occurs naturally between DNA with similar sequences during meiosis.

The targeting vector is introduced into mouse embryonic stem cells in culture, using methods such as electroporation—use of electric pulses to temporarily create pores in the cell membrane. Typically, to identify cells where the vector has properly replaced the gene, it is designed to include a positive selection marker—such as the gene for neomycin resistance (NeoR)—between the homologous regions; and a negative selection marker—such as the gene for viral thymidine kinase (TK)—after one of the homologous regions.

The cells are exposed to neomycin, and only those that have incorporated the vector into their DNA will survive because they have the NeoR gene. Also, cells, where the vector has replaced the targeted gene through homologous recombination, will not have the TK gene, allowing them to survive in the presence of the drug ganciclovir. Therefore, exposure to ganciclovir is used to eliminate cells that have the vector randomly inserted into their genome, because these cells will have the TK gene.

The cells with the gene properly knocked out are then inserted into a mouse embryo, which is implanted into the uterus of a female, where it develops until birth. The resulting mouse is a chimera—meaning it is composed of a mixture of cells—some with normal DNA from the embryo, and some with the gene knocked out on one chromosome from the engineered cells. These mice are bred, and offspring containing the gene in their germline are further crossbred to create a line of mice where every cell is homozygous for the knockout. These knockout mice can then be used to study gene function.

Suggested Reading

Hall, Bradford, Advait Limaye, and Ashok B Kulkarni. “Overview: Generation of Gene Knockout Mice.” Current Protocols in Cell Biology / Editorial Board, Juan S. Bonifacino … [et Al.] CHAPTER (September 2009): Unit-19.1217. [Source]