6.25: Application of Group Theory to IR Spectroscopy

1. Setup of the Schlenk Line (for a more detailed procedure, please review the "Schlenk Lines Transfer of Solvent" video in the Essentials of Organic Chemistry series). Schlenk line safety should be reviewed prior to conducting this experiment. Glassware should be inspected for star cracks before use. Care should be taken to ensure that O₂ is not condensed in the Schlenk line trap if using liquid N₂. At liquid N₂ temperature, O₂ condenses and is explosive in the presence of organic solvents. If it is suspected that O₂ has been condensed or a blue liquid is observed in the cold trap, leave the trap cold under dynamic vacuum. Do NOT remove the liquid N₂ trap or turn off the vacuum pump. Over time the liquid O₂ will sublime into the pump; it is only safe to remove the liquid N₂ trap once all of the O₂ has sublimed.

1. Close the pressure release valve.
2. Turn on the N₂ gas and the vacuum pump.
3. As the Schlenk line vacuum reaches its minimum pressure, prepare the cold trap with either liquid N₂ or dry ice/acetone.
4. Assemble the cold trap.

2. Synthesis of Mo(CO)₄[P(OPh)₃]₂ (Figure 4)¹

Note: Use standard Schlenk line techniques for the synthesis of Mo(CO)₄[P(OPh)₃]₂ (see the "Synthesis of a Ti(III) Metallocene Using Schlenk line Technique" video). Metal carbonyl complexes are a source of free CO, which is highly toxic. Carbon monoxide poisoning occurs when CO binds to hemoglobin, resulting in significant reduction of oxygen supply to the body. Therefore, it is extremely important to take appropriate safety measures when handling and working with metal carbonyl complexes. Reactions that generate free CO need to be conducted in a well-ventilated hood to prevent exposure to the toxic gas.

1. Add 1.6 g (4.92 mmol) Mo(CO)₄(nbd) (nbd = 2,5-Norbornadiene) and 1.6 mL (9.84 mmol) triphenyl phosphite (P(OPh)₃) to a 100 mL Schlenk flask and prepare the Schlenk flask for the cannula transfer of solvent.
   Note: Mo(CO)₄(nbd) ((Bicyclo[2.2.1]hepta-2,5-diene)tetracarbonylmolybdenum(0)) can be purchased from Sigma Aldrich or synthesized using literature methods.²
2. Add 20 mL of degassed dichloromethane to the Schlenk flask via cannula transfer.
3. Stir the reaction mixture for 4 h at room temperature under N₂.
4. Remove the volatiles under vacuum and wash the resulting precipitate with cold hexanes (two washes each with 10 mL, −78 °C). 
5. Dry the solid product under vacuum for 15 min.
6. Measure the IR spectrum of the product in a solution of hexanes.

Figure 4. Synthesis of Mo(CO)₄[P(OPh)₃]_2.

Group theory is a mathematical model connecting molecular symmetry to properties such as IR-active vibrational modes.

Every molecule can be classified with a point group, which describes every symmetry element present in a molecule with respect to a fixed point.

Group theory provides special tables, called character tables, to predict the effect of a molecule's symmetry on its vibrational modes and other important properties.

This video will discuss the underlying principles of group theory, illustrate the procedure for the synthesis and characterization of an isomer of Mo(CO)4[P(OPh)3]2, and introduce a few applications of group theory in chemistry.

Molecular symmetry describes the indistinguishable configurations of a molecule. The transformations between them are called symmetry operations, which occur with respect to one or more symmetry elements.

The five symmetry elements are proper and improper rotation axes, mirror planes, centers of inversion, and identity. Every molecule has the identity element, or E, in which no change occurs.

A mirror plane, labeled ?, is a reflection plane with identical starting and ending configurations. Molecules may have more than one mirror plane. A center of inversion, labeled i, is a point through which every atom is reflected.

A proper rotation axis is an axis around which a molecule rotates to an identical configuration. It is labeled Cn, where n is 360 divided by the angle of rotation.

An improper rotation axis, labeled Sn, is the axis around which a molecule is rotated and then reflected through a perpendicular mirror plane. Molecules may have more than one rotation axis. The axis with the highest n is the principal axis.

Molecules are assigned to point groups using a symmetry tree, which identifies the symmetry operations needed to classify the molecule.

For example, BF3 is non-linear. It does not have at least two axes with n greater than 2. It has at least one rotation axis; its principal axis is C3. It has three C2 axes perpendicular to its principal axis, and a mirror plane perpendicular to its principal axis. Thus, boron trifluoride belongs to the D3h point group.

Each point group has a character table listing its essential symmetry operations. Each row contains an irreducible representation of the operations, along with the corresponding atomic orbitals and linear movements.

Reducible representations are generated by evaluating how these symmetry operations affect molecular properties. Reducing this representation gives the contributing irreducible representations.

Now that you understand the principles of group theory, let's go through a procedure for synthesizing an isomer of Mo(CO)4[P(OPh)3]2 and comparing its IR spectrum to the number of IR-active modes predicted for each isomer by group theory.

To begin the procedure, close the Schlenk line vent, and start the flow of N2 gas. Turn on the vacuum pump and with the system at its minimum pressure, cool the vacuum trap with dry ice in acetone.

In a fume hood, measure out 0.5 g of Mo(CO)4(nbd) and place the molybdenum precursor into a 200-mL Schlenk flask. Equip the reaction flask with a stir bar and stopper the flask with a glass stopper. Connect the flask to the Schlenk line via the side arm, and prepare the flask for cannula transfer by evacuating the vessel for 5 minutes, followed by refilling the flask with N2. Repeat this evacuation and refill process a total of 3 times.

Next, prepare another Schlenk flask fitted with a rubber septum containing 20 mL of CH2Cl2. Connect the flask to the Schlenk line and secure the flask in the hood. Using a syringe, draw up 0.87 mL of triphenyl phosphite and dispense it into the Schlenk flask. Make sure the Schlenk line stopcock is open to N2. Degas the CH2Cl2/triphenyl phosphite mixture by bubbling N2 through the solvent for 10 minutes. Then use cannula transfer to add the solution to the flask containing the solid. Open the reaction flask to N2 gas and stir the mixture at room temperature for 4 hours.

Once the reaction has finished, replace the rubber septum with a glass stopper, and remove volatile solvents under vacuum.

Add hexanes to the resulting product and cool in a dry ice/acetone bath briefly, until a precipitate forms. Filter the precipitate and wash the precipitate twice with 10 mL of cold hexanes and collect the solid by filtration. Dry the solid product under vacuum for 15 minutes.

Lastly, dissolve a portion of the product in hexanes and load the solution into an IR cell. Acquire an IR spectrum of the complex.

Now, let's determine whether the product is the cis or trans isomer by assigning point groups to both isomers and comparing the predicted IR-active modes to the IR spectrum.

Neither the cis nor trans isomer is linear, and neither has more than two rotation axes with orders higher than 2. Both have at least one rotation axis. The principal axes for the cis and trans isomers are C2 and C4, respectively.

The cis isomer does not have two C2 axes perpendicular to its C2 axis, nor does it have a perpendicular mirror plane. It has two mirror planes containing the C2 axis, so its point group is C2v. The trans isomer has four C2 axes and a mirror plane perpendicular to its C4 axis, so its point group is D4h.

Next, reducible representations of the CO stretches are generated by applying each symmetry operation to the molecule and counting the C-O stretches?that do not change locations in space.

The C2v table has four operations: identity, C2 rotation, and reflections through two mirror planes containing the C2 axis. In the identity operation, all four dipole moments remain in place. All four dipole moments take different positions after a C2 rotation. Two dipole moments remain in the same position for each reflection.

The reduction formula calculates the coefficient of each irreducible representation in the reducible representation. The point group order is the number of symmetry operations. Classes are types of symmetry operations. Here, the number of operations in each class is 1, which is traditionally omitted from a character table.

The character is the value corresponding to a representation for a given class. When the reduction formula is applied, three irreducible representations are found, with one occurring twice. These representations transform as either the x, y, or z axis, which is consistent with four IR-active C-O stretches.

Using the same technique, the trans isomer is found to have one IR-active C-O stretch. The IR spectrum of the molybdenum product has peaks at 2046, 1958, and 1942 cm-1. With higher resolution data, a fourth C-O stretch may be observed. Based on the obtained IR, one can conclude that the isolated?Mo(CO)4[P(OPh)3]2?complex is the cis?isomer.

Group theory is widely used in organic and inorganic chemistry. Let's look at a few examples.

Raman spectroscopy detects molecular vibrations that involve changes in polarizability in the electron cloud. A symmetrical stretch in CO2 does not change the dipole moment, and therefore is not IR-active. However, electrons moving away from nuclei change the polarizability, making the stretch Raman-active. Group theory can identify Raman-active vibrational modes by following the same general method used to identify IR-active modes.

Molecular orbital theory, or MO theory, is a model used to describe bonding in molecules. Adding and subtracting the atomic orbitals of two atoms leads to the formation of molecular orbital diagrams of simple diatomics.

To generate MO diagrams of transition metal complexes, scientists use group theory to generate symmetry-adapted linear combinations of atomic orbitals to represent the outer atoms or ligands. This is achieved by generating reducible representations of the ligand atomic orbitals, and then reducing this to an irreducible representation.

The symmetry representations of the metal center and the symmetry-adapted linear combinations are compared in the diagram. In this model, orbitals with the same symmetry overlap to form two molecular orbitals.

You've just watched JoVE's introduction to group theory. You should now be familiar with the underlying principles of molecular symmetry, finding the point group of a molecule, and some examples of how group theory is used in organic and inorganic chemistry. Thanks for watching!