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Brain Infarct Segmentation and Registration on MRI or CT for Lesion-symptom Mapping
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JoVE Journal Behavior
Brain Infarct Segmentation and Registration on MRI or CT for Lesion-symptom Mapping

Brain Infarct Segmentation and Registration on MRI or CT for Lesion-symptom Mapping

DOI:
10.3791/59653-v

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10:25 min

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September 25, 2019

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, , , , , ,
1Department of Neurology and Neurosurgery, UMC Utrecht Brain Center, University Medical Center Utrecht,Utrecht University, 2Image Sciences Institute,University Medical Center Utrecht, 3BrainNow Research Institute, 4Institute for Stroke and Dementia Research, University Hospital,LMU Munich

Chapters

  • 00:04Title
  • 00:59Data Collection and Conversion
  • 02:41Infarct Segmentation on CT
  • 04:38Infarct Segmentation on DWI and FLAIR
  • 05:54Registration to Standard Space
  • 08:19Results: Brain Infarct Segmentation and Registration
  • 09:40Conclusion

Summary

Automatic Translation

Automatic Translation

Provided here is a practical tutorial for an open-access, standardized image processing pipeline for the purpose of lesion-symptom mapping. A step-by-step walkthrough is provided for each processing step, from manual infarct segmentation on CT/MRI to subsequent registration to standard space, along with practical recommendations and illustrations with exemplary cases.

Tags

Brain InfarctLesion SegmentationLesion RegistrationLesion-symptom MappingMRICTDICOMNIfTIImage ProcessingBrain FunctionsSpatial AlignmentStroke

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