Caroline C. Friedel Institute for Informatics Ludwig-Maximilians-Universität München Biography Publications Institution JoVE Articles Caroline C. Friedel has not added a biography. If you are Caroline C. Friedel and would like to personalize this page please email our Author Liaison for assistance. Publications Clonal Expansion Analysis of Transposon Insertions by High-Throughput Sequencing Identifies Candidate Cancer Genes in a PiggyBac Mutagenesis Screen PloS One. 2013 | Pubmed ID: 23940809 Deciphering the Modulation of Gene Expression by Type I and II Interferons Combining 4sU-tagging, Translational Arrest and in Silico Promoter Analysis Nucleic Acids Research. Jul, 2013 | Pubmed ID: 23832230 β1- and αv-class Integrins Cooperate to Regulate Myosin II During Rigidity Sensing of Fibronectin-based Microenvironments Nature Cell Biology. Jun, 2013 | Pubmed ID: 23708002 A Comprehensive Evaluation of Alignment Algorithms in the Context of RNA-seq PloS One. 2012 | Pubmed ID: 23300661 Real-time Transcriptional Profiling of Cellular and Viral Gene Expression During Lytic Cytomegalovirus Infection PLoS Pathogens. Sep, 2012 | Pubmed ID: 22969428 Detection and Correction of Probe-level Artefacts on Microarrays BMC Bioinformatics. 2012 | Pubmed ID: 22647057 Ultrashort and Progressive 4sU-tagging Reveals Key Characteristics of RNA Processing at Nucleotide Resolution Genome Research. Oct, 2012 | Pubmed ID: 22539649 A Context-based Approach to Identify the Most Likely Mapping for RNA-seq Experiments BMC Bioinformatics. 2012 | Pubmed ID: 22537048 Genome-wide Assessment of AU-rich Elements by the AREScore Algorithm PLoS Genetics. Jan, 2012 | Pubmed ID: 22242014 The SARS-coronavirus-host Interactome: Identification of Cyclophilins As Target for Pan-coronavirus Inhibitors PLoS Pathogens. Oct, 2011 | Pubmed ID: 22046132 Virus-host Interactomes and Global Models of Virus-infected Cells Trends in Microbiology. Oct, 2011 | Pubmed ID: 21855347 Quantitative Proteomics of the Integrin Adhesome Show a Myosin II-dependent Recruitment of LIM Domain Proteins EMBO Reports. Mar, 2011 | Pubmed ID: 21311561 Systematic Analysis of Viral and Cellular MicroRNA Targets in Cells Latently Infected with Human Gamma-herpesviruses by RISC Immunoprecipitation Assay Cell Host & Microbe. Apr, 2010 | Pubmed ID: 20413099 HALO--a Java Framework for Precise Transcript Half-life Determination Bioinformatics (Oxford, England). May, 2010 | Pubmed ID: 20299326 Metabolic Tagging and Purification of Nascent RNA: Implications for Transcriptomics Molecular BioSystems. Nov, 2009 | Pubmed ID: 19823741 Evolutionarily Conserved Herpesviral Protein Interaction Networks PLoS Pathogens. Sep, 2009 | Pubmed ID: 19730696 Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Aug, 2009 | Pubmed ID: 19630542 Conserved Principles of Mammalian Transcriptional Regulation Revealed by RNA Half-life Nucleic Acids Research. Sep, 2009 | Pubmed ID: 19561200 Identifying the Topology of Protein Complexes from Affinity Purification Assays Bioinformatics (Oxford, England). Aug, 2009 | Pubmed ID: 19505940 FERN - a Java Framework for Stochastic Simulation and Evaluation of Reaction Networks BMC Bioinformatics. 2008 | Pubmed ID: 18755046 High-resolution Gene Expression Profiling for Simultaneous Kinetic Parameter Analysis of RNA Synthesis and Decay RNA (New York, N.Y.). Sep, 2008 | Pubmed ID: 18658122 ProCope--protein Complex Prediction and Evaluation Bioinformatics (Oxford, England). Sep, 2008 | Pubmed ID: 18635566 Influence of Degree Correlations on Network Structure and Stability in Protein-protein Interaction Networks BMC Bioinformatics. 2007 | Pubmed ID: 17688687 Analysis of Intraviral Protein-protein Interactions of the SARS Coronavirus ORFeome PloS One. 2007 | Pubmed ID: 17520018 Inferring Topology from Clustering Coefficients in Protein-protein Interaction Networks BMC Bioinformatics. 2006 | Pubmed ID: 17137490 Reliable Gene Signatures for Microarray Classification: Assessment of Stability and Performance Bioinformatics (Oxford, England). Oct, 2006 | Pubmed ID: 16882647 Toward the Complete Interactome Nature Biotechnology. Jun, 2006 | Pubmed ID: 16763580 Support Vector Machines for Separation of Mixed Plant-pathogen EST Collections Based on Codon Usage Bioinformatics (Oxford, England). Apr, 2005 | Pubmed ID: 15585526 Análise em tempo real do fator de transcrição, ligação, transcrição, tradução e volume de negócios para exibir eventos globais durante a ativação celular Kathrin Davari*1, Johannes Lichti*1, Caroline C. Friedel2, Elke Glasmacher1,3 1Institute for Diabetes and Obesity (IDO), German Center for Diabetes Research (DZD), Helmholtz Zentrum München, 2Institute for Informatics, Ludwig-Maximilians-Universität München, 3Roche Pharma Research and Early Development, Large Molecule Research, Roche Innovation Center Penzberg JoVE 56752 Genetics Marcação metabólica de RNA recém-transcrita para alta resolução Gene Expression Profiling de síntese de RNA, Processamento e Decay em cultura de células Bernd Rädle*1, Andrzej J. Rutkowski*2, Zsolt Ruzsics1, Caroline C. Friedel3, Ulrich H. Koszinowski1, Lars Dölken2 1Max von Pettenkofer Institute, 2Department of Medicine, University of Cambridge, 3Institute for Informatics, Ludwig-Maximilians-University Munich JoVE 50195 Biology
Análise em tempo real do fator de transcrição, ligação, transcrição, tradução e volume de negócios para exibir eventos globais durante a ativação celular Kathrin Davari*1, Johannes Lichti*1, Caroline C. Friedel2, Elke Glasmacher1,3 1Institute for Diabetes and Obesity (IDO), German Center for Diabetes Research (DZD), Helmholtz Zentrum München, 2Institute for Informatics, Ludwig-Maximilians-Universität München, 3Roche Pharma Research and Early Development, Large Molecule Research, Roche Innovation Center Penzberg JoVE 56752 Genetics
Marcação metabólica de RNA recém-transcrita para alta resolução Gene Expression Profiling de síntese de RNA, Processamento e Decay em cultura de células Bernd Rädle*1, Andrzej J. Rutkowski*2, Zsolt Ruzsics1, Caroline C. Friedel3, Ulrich H. Koszinowski1, Lars Dölken2 1Max von Pettenkofer Institute, 2Department of Medicine, University of Cambridge, 3Institute for Informatics, Ludwig-Maximilians-University Munich JoVE 50195 Biology
