Dmitri B. Papkovsky

Publications

• Heterosubstituted Derivatives of PtPFPP for O Sensing and Cell Analysis: Structure-Activity Relationships
  Bioconjugate Chemistry. Nov, 2022  |   Pubmed ID: 36289566
• Ghrelin Rapidly Elevates Protein Synthesis in Vitro by Employing the RpS6K-eEF2K-eEF2 Signalling Axis
  Cellular and Molecular Life Sciences : CMLS. Jul, 2022  |   Pubmed ID: 35841486
• Mitochondrial Complex IV Defects Induce Metabolic and Signaling Perturbations That Expose Potential Vulnerabilities in HCT116 Cells
  FEBS Open Bio. May, 2022  |   Pubmed ID: 35302710
• A Sensor-based System for Rapid On-site Testing of Microbial Contamination in Meat Samples and Carcasses
  Journal of Applied Microbiology. Feb, 2022  |   Pubmed ID: 34464989
• A Simple Sensor System for Onsite Monitoring of O in Vacuum-Packed Meats During the Shelf Life
  Sensors (Basel, Switzerland). Jun, 2021  |   Pubmed ID: 34206251
• Cell Energy Budget Platform for Multiparametric Assessment of Cell and Tissue Metabolism
  Methods in Molecular Biology (Clifton, N.J.). 2021  |   Pubmed ID: 34060051
• Facile Biosensor-based System for On-site Quantification of Total Viable Counts in Food and Environmental Swabs
  Biosensors & Bioelectronics. Mar, 2021  |   Pubmed ID: 33395568
• Mapping O Concentration in Ex-vivo Tissue Samples on a Fast PLIM Macro-imager
  Scientific Reports. Nov, 2020  |   Pubmed ID: 33149165
• Reduced Oxidative Phosphorylation and Increased Glycolysis in Human Glaucoma Lamina Cribrosa Cells
  Investigative Ophthalmology & Visual Science. Nov, 2020  |   Pubmed ID: 33137197
• Unusually Efficient CUG Initiation of an Overlapping Reading Frame in MRNA Yields Novel Protein POLGARF
  Proceedings of the National Academy of Sciences of the United States of America. Oct, 2020  |   Pubmed ID: 32958672
• Correction To: Disruption of Hypoxia-inducible Fatty Acid Binding Protein 7 Induces Beige Fat-like Differentiation and Thermogenesis in Breast Cancer Cells
  Cancer & Metabolism. 2020  |   Pubmed ID: 32789015
• Visualization of Stem Cell Niche by Fluorescence Lifetime Imaging Microscopy
  Methods in Molecular Biology (Clifton, N.J.). 2020  |   Pubmed ID: 32705636
• Translation Initiation Downstream from Annotated Start Codons in Human MRNAs Coevolves with the Kozak Context
  Genome Research. Jul, 2020  |   Pubmed ID: 32669370
• Disruption of Hypoxia-inducible Fatty Acid Binding Protein 7 Induces Beige Fat-like Differentiation and Thermogenesis in Breast Cancer Cells
  Cancer & Metabolism. 2020  |   Pubmed ID: 32647572
• A Deeper Understanding of Intestinal Organoid Metabolism Revealed by Combining Fluorescence Lifetime Imaging Microscopy (FLIM) and Extracellular Flux Analyses
  Redox Biology. Feb, 2020  |   Pubmed ID: 31935648
• Estimation of the Mitochondrial Membrane Potential Using Fluorescence Lifetime Imaging Microscopy
  Cytometry. Part A : the Journal of the International Society for Analytical Cytology. May, 2020  |   Pubmed ID: 31486581
• Nanoparticle-based Fluoroionophore for Analysis of Potassium Ion Dynamics in 3D Tissue Models and
  Advanced Functional Materials. Feb, 2018  |   Pubmed ID: 30271316
• Cellulose-based Scaffolds for Fluorescence Lifetime Imaging-assisted Tissue Engineering
  Acta Biomaterialia. Oct, 2018  |   Pubmed ID: 30261339
• Imaging of Oxygen and Hypoxia in Cell and Tissue Samples
  Cellular and Molecular Life Sciences : CMLS. Aug, 2018  |   Pubmed ID: 29761206
• Assessment of Performance of the Industrial Process of Bulk Vacuum Packaging of Raw Meat with Nondestructive Optical Oxygen Sensing Systems
  Sensors (Basel, Switzerland). May, 2018  |   Pubmed ID: 29724024
• Multi-Parametric Imaging of Hypoxia and Cell Cycle in Intestinal Organoid Culture
  Advances in Experimental Medicine and Biology. 2017  |   Pubmed ID: 29080132
• Live Cell Imaging of Mouse Intestinal Organoids Reveals Heterogeneity in Their Oxygenation
  Biomaterials. Nov, 2017  |   Pubmed ID: 28898760
• Insulin-like Growth Factor 1 Signaling is Essential for Mitochondrial Biogenesis and Mitophagy in Cancer Cells
  The Journal of Biological Chemistry. Oct, 2017  |   Pubmed ID: 28821609
• Single-cell Time-lapse Imaging of Intracellular O in Response to Metabolic Inhibition and Mitochondrial Cytochrome-c Release
  Cell Death & Disease. Jun, 2017  |   Pubmed ID: 28569778
• Phosphorescent Oxygen and Mechanosensitive Nanostructured Materials Based on Hard Elastic Polypropylene Films
  ACS Applied Materials & Interfaces. Apr, 2017  |   Pubmed ID: 28367617
• Steering Surface Topographies of Electrospun Fibers: Understanding the Mechanisms
  Scientific Reports. Mar, 2017  |   Pubmed ID: 28279011
• Planar Implantable Sensor for in Vivo Measurement of Cellular Oxygen Metabolism in Brain Tissue
  Journal of Neuroscience Methods. Apr, 2017  |   Pubmed ID: 28219725
• Low Energy Costs of F1Fo ATP Synthase Reversal in Colon Carcinoma Cells Deficient in Mitochondrial Complex IV
  Free Radical Biology & Medicine. May, 2017  |   Pubmed ID: 28189850
• Cellular ROS Imaging with Hydro-Cy3 Dye is Strongly Influenced by Mitochondrial Membrane Potential
  Biochimica Et Biophysica Acta. General Subjects. Feb, 2017  |   Pubmed ID: 27818165
• Quantitative Analysis of Mucosal Oxygenation Using Ex Vivo Imaging of Healthy and Inflamed Mammalian Colon Tissue
  Cellular and Molecular Life Sciences : CMLS. Jan, 2017  |   Pubmed ID: 27510419
• Use of Fluorescence Lifetime Imaging Microscopy (FLIM) As a Timer of Cell Cycle S Phase
  PloS One. 2016  |   Pubmed ID: 27973570
• Phosphorescence Based O Sensors - Essential Tools for Monitoring Cell and Tissue Oxygenation and Its Impact on Metabolism
  Free Radical Biology & Medicine. Dec, 2016  |   Pubmed ID: 27789291
• Sulforhodamine Nanothermometer for Multiparametric Fluorescence Lifetime Imaging Microscopy
  Analytical Chemistry. 11, 2016  |   Pubmed ID: 27696826
• An Assessment of the Influence of the Industry Distribution Chain on the Oxygen Levels in Commercial Modified Atmosphere Packaged Cheddar Cheese Using Non-Destructive Oxygen Sensor Technology
  Sensors (Basel, Switzerland). Jun, 2016  |   Pubmed ID: 27331815
• The Ca2+/Mn2+-transporting SPCA2 Pump is Regulated by Oxygen and Cell Density in Colon Cancer Cells
  The Biochemical Journal. Aug, 2016  |   Pubmed ID: 27316461
• Metallochelate Coupling of Phosphorescent Pt-Porphyrins to Peptides, Proteins, and Self-Assembling Protein Nanoparticles
  Bioconjugate Chemistry. Feb, 2016  |   Pubmed ID: 26704593
• Hypothermia Protects Brain Mitochondrial Function from Hypoxemia in a Murine Model of Sepsis
  Journal of Cerebral Blood Flow and Metabolism : Official Journal of the International Society of Cerebral Blood Flow and Metabolism. Nov, 2016  |   Pubmed ID: 26661160
• Intracellular Probes for Imaging Oxygen Concentration: How Good Are They?
  Methods and Applications in Fluorescence. Apr, 2015  |   Pubmed ID: 29148495
• A Novel Effect of DMOG on Cell Metabolism: Direct Inhibition of Mitochondrial Function Precedes HIF Target Gene Expression
  Biochimica Et Biophysica Acta. Oct, 2015  |   Pubmed ID: 26143176
• Oxygen and Glucose Deprivation Induces Widespread Alterations in MRNA Translation Within 20 Minutes
  Genome Biology. May, 2015  |   Pubmed ID: 25943107
• Versatile Conjugated Polymer Nanoparticles for High-Resolution O2 Imaging in Cells and 3D Tissue Models
  ACS Nano. May, 2015  |   Pubmed ID: 25858428
• Oxygen-sensing Scaffolds for 3-dimensional Cell and Tissue Culture
  Acta Biomaterialia. Apr, 2015  |   Pubmed ID: 25653216
• Cell Energy Budget Platform for Assessment of Cell Metabolism
  Methods in Molecular Biology (Clifton, N.J.). 2015  |   Pubmed ID: 25634285
• In Vitro Ischemia Decreases Histone H4K16 Acetylation in Neural Cells
  FEBS Letters. Jan, 2015  |   Pubmed ID: 25479088
• Differential Contribution of Key Metabolic Substrates and Cellular Oxygen in HIF Signalling
  Experimental Cell Research. Jan, 2015  |   Pubmed ID: 25447307
• Multi-parametric O₂ Imaging in Three-dimensional Neural Cell Models with the Phosphorescent Probes
  Methods in Molecular Biology (Clifton, N.J.). 2015  |   Pubmed ID: 25431057
• Comparison of the Three Optical Platforms for Measurement of Cellular Respiration
  Analytical Biochemistry. Jan, 2015  |   Pubmed ID: 25233002
• Imaging Oxygen in Neural Cell and Tissue Models by Means of Anionic Cell-permeable Phosphorescent Nanoparticles
  Cellular and Molecular Life Sciences : CMLS. Jan, 2015  |   Pubmed ID: 25006059
• Small Molecule Phosphorescent Probes for O Imaging in 3D Tissue Models
  Biomaterials Science. Jun, 2014  |   Pubmed ID: 32481818
• Kinetic Analysis of Local Oxygenation and Respiratory Responses of Mammalian Cells Using Intracellular Oxygen-sensitive Probes and Time-resolved Fluorometry
  Methods in Enzymology. 2014  |   Pubmed ID: 24862267
• Oxygen-sensitive Phosphorescent Nanomaterials Produced from High-density Polyethylene Films by Local Solvent-crazing
  Analytical Chemistry. Feb, 2014  |   Pubmed ID: 24422456
• Availability of the Key Metabolic Substrates Dictates the Respiratory Response of Cancer Cells to the Mitochondrial Uncoupling
  Biochimica Et Biophysica Acta. Jan, 2014  |   Pubmed ID: 23891695
• Use of Optical Oxygen Sensors in Non-Destructively Determining the Levels of Oxygen Present in Combined Vacuum and Modified Atmosphere Packaged Pre-Cooked Convenience-Style Foods and the Use of Ethanol Emitters to Extend Product Shelf-Life
  Foods (Basel, Switzerland). Nov, 2013  |   Pubmed ID: 28239134
• Assessment and Use of Optical Oxygen Sensors As Tools to Assist in Optimal Product Component Selection for the Development of Packs of Ready-to-Eat Mixed Salads and for the Non-Destructive Monitoring of In-Pack Oxygen Levels Using Chilled Storage
  Foods (Basel, Switzerland). May, 2013  |   Pubmed ID: 28239110
• Imaging of Neurosphere Oxygenation with Phosphorescent Probes
  Biomaterials. Dec, 2013  |   Pubmed ID: 24016849
• Measurement of Cell Respiration and Oxygenation in Standard Multichannel Biochips Using Phosphorescent O2-sensitive Probes
  The Analyst. Sep, 2013  |   Pubmed ID: 23803790
• Biological Detection by Optical Oxygen Sensing
  Chemical Society Reviews. Nov, 2013  |   Pubmed ID: 23775387
• In Vivo Imaging of Brain Metabolism Activity Using a Phosphorescent Oxygen-sensitive Probe
  Journal of Neuroscience Methods. Jun, 2013  |   Pubmed ID: 23624034
• Chronic Hypoxia Leads to a Glycolytic Phenotype and Suppressed HIF-2 Signaling in PC12 Cells
  Biochimica Et Biophysica Acta. Jun, 2013  |   Pubmed ID: 23462283
• Genome-wide Investigation of Cellular Targets and Mode of Action of the Antifungal Bacterial Metabolite 2,4-diacetylphloroglucinol in Saccharomyces Cerevisiae
  FEMS Yeast Research. May, 2013  |   Pubmed ID: 23445507
• Bafilomycin A1 Activates HIF-dependent Signalling in Human Colon Cancer Cells Via Mitochondrial Uncoupling
  Bioscience Reports. Dec, 2012  |   Pubmed ID: 22943412
• G2019S Leucine-rich Repeat Kinase 2 Causes Uncoupling Protein-mediated Mitochondrial Depolarization
  Human Molecular Genetics. Oct, 2012  |   Pubmed ID: 22736029
• Assessment of Cellular Oxygen Gradients with a Panel of Phosphorescent Oxygen-sensitive Probes
  Analytical Chemistry. Mar, 2012  |   Pubmed ID: 22380020
• Optical Probes and Techniques for O2 Measurement in Live Cells and Tissue
  Cellular and Molecular Life Sciences : CMLS. Jun, 2012  |   Pubmed ID: 22249195
• Cell-penetrating Conjugates of Coproporphyrins with Oligoarginine Peptides: Rational Design and Application for Sensing Intracellular O2
  Bioconjugate Chemistry. Dec, 2011  |   Pubmed ID: 22035070
• Metabolic Profiling of Hypoxic Cells Revealed a Catabolic Signature Required for Cell Survival
  PloS One. 2011  |   Pubmed ID: 21912692
• Intracellular O2 Sensing Probe Based on Cell-penetrating Phosphorescent Nanoparticles
  ACS Nano. Jul, 2011  |   Pubmed ID: 21671589
• Bafilomycin A1 Activates Respiration of Neuronal Cells Via Uncoupling Associated with Flickering Depolarization of Mitochondria
  Cellular and Molecular Life Sciences : CMLS. Mar, 2011  |   Pubmed ID: 20820851
• Bactenecin 7 Peptide Fragment As a Tool for Intracellular Delivery of a Phosphorescent Oxygen Sensor
  The FEBS Journal. Nov, 2010  |   Pubmed ID: 20883447
• Monitoring of Cell Oxygenation and Responses to Metabolic Stimulation by Intracellular Oxygen Sensing Technique
  Integrative Biology : Quantitative Biosciences from Nano to Macro. Sep, 2010  |   Pubmed ID: 20657921
• Extracellular Calcium Depletion Transiently Elevates Oxygen Consumption in Neurosecretory PC12 Cells Through Activation of Mitochondrial Na+/Ca2+ Exchange
  Biochimica Et Biophysica Acta. Sep, 2010  |   Pubmed ID: 20550942
• Phosphorescent Oxygen Sensors Based on Nanostructured Polyolefin Substrates
  Analytical Chemistry. Jan, 2010  |   Pubmed ID: 20038091
• Imaging of Cellular Oxygen and Analysis of Metabolic Responses of Mammalian Cells
  Methods in Molecular Biology (Clifton, N.J.). 2010  |   Pubmed ID: 19957136
• Intracellular Oxygen-sensitive Phosphorescent Probes Based on Cell-penetrating Peptides
  Analytical Biochemistry. Mar, 2010  |   Pubmed ID: 19931212
• Analysis of Activity and Inhibition of Oxygen-dependent Enzymes by Optical Respirometry on the LightCycler System
  Analytical Biochemistry. Feb, 2010  |   Pubmed ID: 19849999
• In Vitro Analysis of Cell Metabolism Using a Long-decay PH-sensitive Lanthanide Probe and Extracellular Acidification Assay
  Analytical Biochemistry. Jul, 2009  |   Pubmed ID: 19379702
• PGC-1alpha is Coupled to HIF-1alpha-dependent Gene Expression by Increasing Mitochondrial Oxygen Consumption in Skeletal Muscle Cells
  Proceedings of the National Academy of Sciences of the United States of America. Feb, 2009  |   Pubmed ID: 19179292
• Toxicological Profiling of Chemical and Environmental Samples Using Panels of Test Organisms and Optical Oxygen Respirometry
  Environmental Toxicology. Apr, 2009  |   Pubmed ID: 18442072
• Dynamics of Intracellular Oxygen in PC12 Cells Upon Stimulation of Neurotransmission
  The Journal of Biological Chemistry. Feb, 2008  |   Pubmed ID: 18086678
• Homogeneous Time-resolved Fluorescence Assays for the Detection of Activity and Inhibition of Phosphatase Enzymes Employing Phosphorescently Labeled Peptide Substrates
  Analytica Chimica Acta. Feb, 2007  |   Pubmed ID: 17386566
• Sensing Intracellular Oxygen Using Near-infrared Phosphorescent Probes and Live-cell Fluorescence Imaging
  American Journal of Physiology. Regulatory, Integrative and Comparative Physiology. Apr, 2007  |   Pubmed ID: 17170232
• Rapid High-throughput Assessment of Aerobic Bacteria in Complex Samples by Fluorescence-based Oxygen Respirometry
  Applied and Environmental Microbiology. Feb, 2006  |   Pubmed ID: 16461677
• The Use of a Fluorescence-based Oxygen Uptake Assay in the Analysis of Cytotoxicity
  Toxicology in Vitro : an International Journal Published in Association with BIBRA. Aug, 2006  |   Pubmed ID: 16386874
• Fluorescence Based Oxygen Uptake Analysis in the Study of Metabolic Responses to Apoptosis Induction
  Journal of Immunological Methods. Nov, 2005  |   Pubmed ID: 16212976
• Emerging Applications of Phosphorescent Metalloporphyrins
  Journal of Fluorescence. Jul, 2005  |   Pubmed ID: 16167215
• Optical Oxygen Microrespirometry As a Platform for Environmental Toxicology and Animal Model Studies
  Environmental Science & Technology. Jul, 2005  |   Pubmed ID: 16053104
• Homogeneous Assays for Cellular Proteases Employing the Platinum(II)-coproporphyrin Label and Time-resolved Phosphorescence
  Analytical Biochemistry. Jul, 2005  |   Pubmed ID: 15958187
• Evaluation of the Phosphorescent Palladium(II)-coproporphyrin Labels in Separation-free Hybridization Assays
  Analytical Biochemistry. Sep, 2003  |   Pubmed ID: 12927834
• Fluorescence-based Cell Viability Screening Assays Using Water-soluble Oxygen Probes
  Journal of Biomolecular Screening. Jun, 2003  |   Pubmed ID: 12857380
• Synthesis and Evaluation of Phosphorescent Oligonucleotide Probes for Hybridisation Assays
  Nucleic Acids Research. Nov, 2002  |   Pubmed ID: 12409473
• Spectral-luminescent Study of the Porphyrin-diketones and Their Complexes
  Spectrochimica Acta. Part A, Molecular and Biomolecular Spectroscopy. Aug, 2001  |   Pubmed ID: 11506042