Publications

• Generalized Leaky Integrate-and-fire Models Classify Multiple Neuron Types
  Nature Communications. Feb, 2018  |   Pubmed ID: 29459723
• Systematic Generation of Biophysically Detailed Models for Diverse Cortical Neuron Types
  Nature Communications. Feb, 2018  |   Pubmed ID: 29459718
• Generation of a Whole-brain Atlas for the Cholinergic System and Mesoscopic Projectome Analysis of Basal Forebrain Cholinergic Neurons
  Proceedings of the National Academy of Sciences of the United States of America. Jan, 2018  |   Pubmed ID: 29259118
• The BRAIN Initiative Cell Census Consortium: Lessons Learned Toward Generating a Comprehensive Brain Cell Atlas
  Neuron. Nov, 2017  |   Pubmed ID: 29096072
• Local Processing in Neurites of VGluT3-expressing Amacrine Cells Differentially Organizes Visual Information
  ELife. Oct, 2017  |   Pubmed ID: 29022876
• Aberrant Cortical Activity in Multiple GCaMP6-Expressing Transgenic Mouse Lines
  ENeuro. Sep-Oct, 2017  |   Pubmed ID: 28932809
• SmartScope2: Simultaneous Imaging and Reconstruction of Neuronal Morphology
  Scientific Reports. Aug, 2017  |   Pubmed ID: 28839271
• Neuronal Cell-type Classification: Challenges, Opportunities and the Path Forward
  Nature Reviews. Neuroscience. Sep, 2017  |   Pubmed ID: 28775344
• An R-CaMP1.07 Reporter Mouse for Cell-type-specific Expression of a Sensitive Red Fluorescent Calcium Indicator
  PloS One. 2017  |   Pubmed ID: 28640817
• Neocortical Chandelier Cells Developmentally Shape Axonal Arbors Through Reorganization but Establish Subcellular Synapse Specificity Without Refinement
  ENeuro. May-Jun, 2017  |   Pubmed ID: 28584877
• A Robot for High Yield Electrophysiology and Morphology of Single Neurons in Vivo
  Nature Communications. Jun, 2017  |   Pubmed ID: 28569837
• Identification of Preoptic Sleep Neurons Using Retrograde Labelling and Gene Profiling
  Nature. 05, 2017  |   Pubmed ID: 28514446
• Specific Connections of the Interpeduncular Subnuclei Reveal Distinct Components of the Habenulopeduncular Pathway
  The Journal of Comparative Neurology. Aug, 2017  |   Pubmed ID: 28387937
• Diverse Central Projection Patterns of Retinal Ganglion Cells
  Cell Reports. Feb, 2017  |   Pubmed ID: 28228269
• Layer-specific Chromatin Accessibility Landscapes Reveal Regulatory Networks in Adult Mouse Visual Cortex
  ELife. 01, 2017  |   Pubmed ID: 28112643
• Organization of the Connections Between Claustrum and Cortex in the Mouse
  The Journal of Comparative Neurology. Apr, 2017  |   Pubmed ID: 27223051
• Long-Term Optical Access to an Estimated One Million Neurons in the Live Mouse Cortex
  Cell Reports. 12, 2016  |   Pubmed ID: 28009304
• Two-Photon Holographic Stimulation of ReaChR
  Frontiers in Cellular Neuroscience. 2016  |   Pubmed ID: 27803649
• Genetically Targeted All-Optical Electrophysiology with a Transgenic Cre-Dependent Optopatch Mouse
  The Journal of Neuroscience : the Official Journal of the Society for Neuroscience. Oct, 2016  |   Pubmed ID: 27798186
• Subpallial Enhancer Transgenic Lines: a Data and Tool Resource to Study Transcriptional Regulation of GABAergic Cell Fate
  Neuron. Oct, 2016  |   Pubmed ID: 27710791
• Integration of Autopatching with Automated Pipette and Cell Detection in Vitro
  Journal of Neurophysiology. Oct, 2016  |   Pubmed ID: 27385800
• Inferring Cortical Function in the Mouse Visual System Through Large-scale Systems Neuroscience
  Proceedings of the National Academy of Sciences of the United States of America. Jul, 2016  |   Pubmed ID: 27382147
• Resolution of High-Frequency Mesoscale Intracortical Maps Using the Genetically Encoded Glutamate Sensor IGluSnFR
  The Journal of Neuroscience : the Official Journal of the Society for Neuroscience. Jan, 2016  |   Pubmed ID: 26818514
• Adult Mouse Cortical Cell Taxonomy Revealed by Single Cell Transcriptomics
  Nature Neuroscience. Feb, 2016  |   Pubmed ID: 26727548
• 3D Image-Guided Automatic Pipette Positioning for Single Cell Experiments in Vivo
  Scientific Reports. Dec, 2015  |   Pubmed ID: 26689553
• Electron Microscopy at Scale
  Cell. Jul, 2015  |   Pubmed ID: 26232218
• Validation of Optical Voltage Reporting by the Genetically Encoded Voltage Indicator VSFP-Butterfly from Cortical Layer 2/3 Pyramidal Neurons in Mouse Brain Slices
  Physiological Reports. Jul, 2015  |   Pubmed ID: 26229003
• Lineage Tracing Using Cux2-Cre and Cux2-CreERT2 Mice
  Neuron. May, 2015  |   Pubmed ID: 25996136
• Ca(2+) Signaling in Astrocytes from Ip3r2(-/-) Mice in Brain Slices and During Startle Responses in Vivo
  Nature Neuroscience. May, 2015  |   Pubmed ID: 25894291
• Transgenic Mice for Intersectional Targeting of Neural Sensors and Effectors with High Specificity and Performance
  Neuron. Mar, 2015  |   Pubmed ID: 25741722
• Vasoactive Intestinal Polypeptide (VIP)-expressing Neurons in the Suprachiasmatic Nucleus Provide Sparse GABAergic Outputs to Local Neurons with Circadian Regulation Occurring Distal to the Opening of Postsynaptic GABAA Ionotropic Receptors
  The Journal of Neuroscience : the Official Journal of the Society for Neuroscience. Feb, 2015  |   Pubmed ID: 25653351
• Neuroinformatics of the Allen Mouse Brain Connectivity Atlas
  Methods (San Diego, Calif.). Feb, 2015  |   Pubmed ID: 25536338
• Adaptive Image Enhancement for Tracing 3D Morphologies of Neurons and Brain Vasculatures
  Neuroinformatics. Apr, 2015  |   Pubmed ID: 25310965
• Correlated Gene Expression and Target Specificity Demonstrate Excitatory Projection Neuron Diversity
  Cerebral Cortex (New York, N.Y. : 1991). Feb, 2015  |   Pubmed ID: 24014670
• Experience-dependent Remodeling of Basket Cell Networks in the Dentate Gyrus
  Neuron. Oct, 2014  |   Pubmed ID: 25277456
• Anatomical Characterization of Cre Driver Mice for Neural Circuit Mapping and Manipulation
  Frontiers in Neural Circuits. 2014  |   Pubmed ID: 25071457
• Virtual Finger Boosts Three-dimensional Imaging and Microsurgery As Well As Terabyte Volume Image Visualization and Analysis
  Nature Communications. Jul, 2014  |   Pubmed ID: 25014658
• Transcriptional Regulation of Enhancers Active in Protodomains of the Developing Cerebral Cortex
  Neuron. Jun, 2014  |   Pubmed ID: 24814534
• Scalable Control of Mounting and Attack by Esr1+ Neurons in the Ventromedial Hypothalamus
  Nature. May, 2014  |   Pubmed ID: 24739975
• A Mesoscale Connectome of the Mouse Brain
  Nature. Apr, 2014  |   Pubmed ID: 24695228
• Systematic Comparison of Adeno-associated Virus and Biotinylated Dextran Amine Reveals Equivalent Sensitivity Between Tracers and Novel Projection Targets in the Mouse Brain
  The Journal of Comparative Neurology. Jun, 2014  |   Pubmed ID: 24639291
• Medial Habenula Output Circuit Mediated by α5 Nicotinic Receptor-expressing GABAergic Neurons in the Interpeduncular Nucleus
  The Journal of Neuroscience : the Official Journal of the Society for Neuroscience. Nov, 2013  |   Pubmed ID: 24227714
• Large-scale Cellular-resolution Gene Profiling in Human Neocortex Reveals Species-specific Molecular Signatures
  Cell. Apr, 2012  |   Pubmed ID: 22500809
• Adeno-associated Viral Vectors for Anterograde Axonal Tracing with Fluorescent Proteins in Nontransgenic and Cre Driver Mice
  Current Protocols in Neuroscience. Apr, 2012  |   Pubmed ID: 22470147
• A Toolbox of Cre-dependent Optogenetic Transgenic Mice for Light-induced Activation and Silencing
  Nature Neuroscience. Mar, 2012  |   Pubmed ID: 22446880
• A Cre-dependent GCaMP3 Reporter Mouse for Neuronal Imaging in Vivo
  The Journal of Neuroscience : the Official Journal of the Society for Neuroscience. Feb, 2012  |   Pubmed ID: 22378886
• Mouse Transgenic Approaches in Optogenetics
  Progress in Brain Research. 2012  |   Pubmed ID: 22341327
• Visual Tuning Properties of Genetically Identified Layer 2/3 Neuronal Types in the Primary Visual Cortex of Cre-transgenic Mice
  Frontiers in Systems Neuroscience. 2011  |   Pubmed ID: 21283555
• A Robust and High-throughput Cre Reporting and Characterization System for the Whole Mouse Brain
  Nature Neuroscience. Jan, 2010  |   Pubmed ID: 20023653
• Thyrotropin-releasing Hormone Receptor 1-deficient Mice Display Increased Depression and Anxiety-like Behavior
  Molecular Endocrinology (Baltimore, Md.). Nov, 2007  |   Pubmed ID: 17666589