Hongkui Zeng

Cell Types Program

Allen Institute for Brain Science

Biography
Publications
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JoVE Articles

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Publications

Generalized Leaky Integrate-and-fire Models Classify Multiple Neuron Types
Nature Communications. Feb, 2018 | Pubmed ID: 29459723
Systematic Generation of Biophysically Detailed Models for Diverse Cortical Neuron Types
Nature Communications. Feb, 2018 | Pubmed ID: 29459718
Generation of a Whole-brain Atlas for the Cholinergic System and Mesoscopic Projectome Analysis of Basal Forebrain Cholinergic Neurons
Proceedings of the National Academy of Sciences of the United States of America. Jan, 2018 | Pubmed ID: 29259118
The BRAIN Initiative Cell Census Consortium: Lessons Learned Toward Generating a Comprehensive Brain Cell Atlas
Neuron. Nov, 2017 | Pubmed ID: 29096072
Local Processing in Neurites of VGluT3-expressing Amacrine Cells Differentially Organizes Visual Information
ELife. Oct, 2017 | Pubmed ID: 29022876
Aberrant Cortical Activity in Multiple GCaMP6-Expressing Transgenic Mouse Lines
ENeuro. Sep-Oct, 2017 | Pubmed ID: 28932809
SmartScope2: Simultaneous Imaging and Reconstruction of Neuronal Morphology
Scientific Reports. Aug, 2017 | Pubmed ID: 28839271
Neuronal Cell-type Classification: Challenges, Opportunities and the Path Forward
Nature Reviews. Neuroscience. Sep, 2017 | Pubmed ID: 28775344
An R-CaMP1.07 Reporter Mouse for Cell-type-specific Expression of a Sensitive Red Fluorescent Calcium Indicator
PloS One. 2017 | Pubmed ID: 28640817
Neocortical Chandelier Cells Developmentally Shape Axonal Arbors Through Reorganization but Establish Subcellular Synapse Specificity Without Refinement
ENeuro. May-Jun, 2017 | Pubmed ID: 28584877
A Robot for High Yield Electrophysiology and Morphology of Single Neurons in Vivo
Nature Communications. Jun, 2017 | Pubmed ID: 28569837
Identification of Preoptic Sleep Neurons Using Retrograde Labelling and Gene Profiling
Nature. 05, 2017 | Pubmed ID: 28514446
Specific Connections of the Interpeduncular Subnuclei Reveal Distinct Components of the Habenulopeduncular Pathway
The Journal of Comparative Neurology. Aug, 2017 | Pubmed ID: 28387937
Diverse Central Projection Patterns of Retinal Ganglion Cells
Cell Reports. Feb, 2017 | Pubmed ID: 28228269
Layer-specific Chromatin Accessibility Landscapes Reveal Regulatory Networks in Adult Mouse Visual Cortex
ELife. 01, 2017 | Pubmed ID: 28112643
Organization of the Connections Between Claustrum and Cortex in the Mouse
The Journal of Comparative Neurology. Apr, 2017 | Pubmed ID: 27223051
Long-Term Optical Access to an Estimated One Million Neurons in the Live Mouse Cortex
Cell Reports. 12, 2016 | Pubmed ID: 28009304
Two-Photon Holographic Stimulation of ReaChR
Frontiers in Cellular Neuroscience. 2016 | Pubmed ID: 27803649
Genetically Targeted All-Optical Electrophysiology with a Transgenic Cre-Dependent Optopatch Mouse
The Journal of Neuroscience : the Official Journal of the Society for Neuroscience. Oct, 2016 | Pubmed ID: 27798186
Subpallial Enhancer Transgenic Lines: a Data and Tool Resource to Study Transcriptional Regulation of GABAergic Cell Fate
Neuron. Oct, 2016 | Pubmed ID: 27710791
Integration of Autopatching with Automated Pipette and Cell Detection in Vitro
Journal of Neurophysiology. Oct, 2016 | Pubmed ID: 27385800
Inferring Cortical Function in the Mouse Visual System Through Large-scale Systems Neuroscience
Proceedings of the National Academy of Sciences of the United States of America. Jul, 2016 | Pubmed ID: 27382147
Resolution of High-Frequency Mesoscale Intracortical Maps Using the Genetically Encoded Glutamate Sensor IGluSnFR
The Journal of Neuroscience : the Official Journal of the Society for Neuroscience. Jan, 2016 | Pubmed ID: 26818514
Adult Mouse Cortical Cell Taxonomy Revealed by Single Cell Transcriptomics
Nature Neuroscience. Feb, 2016 | Pubmed ID: 26727548
3D Image-Guided Automatic Pipette Positioning for Single Cell Experiments in Vivo
Scientific Reports. Dec, 2015 | Pubmed ID: 26689553
Electron Microscopy at Scale
Cell. Jul, 2015 | Pubmed ID: 26232218
Validation of Optical Voltage Reporting by the Genetically Encoded Voltage Indicator VSFP-Butterfly from Cortical Layer 2/3 Pyramidal Neurons in Mouse Brain Slices
Physiological Reports. Jul, 2015 | Pubmed ID: 26229003
Lineage Tracing Using Cux2-Cre and Cux2-CreERT2 Mice
Neuron. May, 2015 | Pubmed ID: 25996136
Ca(2+) Signaling in Astrocytes from Ip3r2(-/-) Mice in Brain Slices and During Startle Responses in Vivo
Nature Neuroscience. May, 2015 | Pubmed ID: 25894291
Transgenic Mice for Intersectional Targeting of Neural Sensors and Effectors with High Specificity and Performance
Neuron. Mar, 2015 | Pubmed ID: 25741722
Vasoactive Intestinal Polypeptide (VIP)-expressing Neurons in the Suprachiasmatic Nucleus Provide Sparse GABAergic Outputs to Local Neurons with Circadian Regulation Occurring Distal to the Opening of Postsynaptic GABAA Ionotropic Receptors
The Journal of Neuroscience : the Official Journal of the Society for Neuroscience. Feb, 2015 | Pubmed ID: 25653351
Neuroinformatics of the Allen Mouse Brain Connectivity Atlas
Methods (San Diego, Calif.). Feb, 2015 | Pubmed ID: 25536338
Adaptive Image Enhancement for Tracing 3D Morphologies of Neurons and Brain Vasculatures
Neuroinformatics. Apr, 2015 | Pubmed ID: 25310965
Correlated Gene Expression and Target Specificity Demonstrate Excitatory Projection Neuron Diversity
Cerebral Cortex (New York, N.Y. : 1991). Feb, 2015 | Pubmed ID: 24014670
Experience-dependent Remodeling of Basket Cell Networks in the Dentate Gyrus
Neuron. Oct, 2014 | Pubmed ID: 25277456
Anatomical Characterization of Cre Driver Mice for Neural Circuit Mapping and Manipulation
Frontiers in Neural Circuits. 2014 | Pubmed ID: 25071457
Virtual Finger Boosts Three-dimensional Imaging and Microsurgery As Well As Terabyte Volume Image Visualization and Analysis
Nature Communications. Jul, 2014 | Pubmed ID: 25014658
Transcriptional Regulation of Enhancers Active in Protodomains of the Developing Cerebral Cortex
Neuron. Jun, 2014 | Pubmed ID: 24814534
Scalable Control of Mounting and Attack by Esr1+ Neurons in the Ventromedial Hypothalamus
Nature. May, 2014 | Pubmed ID: 24739975
A Mesoscale Connectome of the Mouse Brain
Nature. Apr, 2014 | Pubmed ID: 24695228
Systematic Comparison of Adeno-associated Virus and Biotinylated Dextran Amine Reveals Equivalent Sensitivity Between Tracers and Novel Projection Targets in the Mouse Brain
The Journal of Comparative Neurology. Jun, 2014 | Pubmed ID: 24639291
Medial Habenula Output Circuit Mediated by α5 Nicotinic Receptor-expressing GABAergic Neurons in the Interpeduncular Nucleus
The Journal of Neuroscience : the Official Journal of the Society for Neuroscience. Nov, 2013 | Pubmed ID: 24227714
Large-scale Cellular-resolution Gene Profiling in Human Neocortex Reveals Species-specific Molecular Signatures
Cell. Apr, 2012 | Pubmed ID: 22500809
Adeno-associated Viral Vectors for Anterograde Axonal Tracing with Fluorescent Proteins in Nontransgenic and Cre Driver Mice
Current Protocols in Neuroscience. Apr, 2012 | Pubmed ID: 22470147
A Toolbox of Cre-dependent Optogenetic Transgenic Mice for Light-induced Activation and Silencing
Nature Neuroscience. Mar, 2012 | Pubmed ID: 22446880
A Cre-dependent GCaMP3 Reporter Mouse for Neuronal Imaging in Vivo
The Journal of Neuroscience : the Official Journal of the Society for Neuroscience. Feb, 2012 | Pubmed ID: 22378886
Mouse Transgenic Approaches in Optogenetics
Progress in Brain Research. 2012 | Pubmed ID: 22341327
Visual Tuning Properties of Genetically Identified Layer 2/3 Neuronal Types in the Primary Visual Cortex of Cre-transgenic Mice
Frontiers in Systems Neuroscience. 2011 | Pubmed ID: 21283555
A Robust and High-throughput Cre Reporting and Characterization System for the Whole Mouse Brain
Nature Neuroscience. Jan, 2010 | Pubmed ID: 20023653
Thyrotropin-releasing Hormone Receptor 1-deficient Mice Display Increased Depression and Anxiety-like Behavior
Molecular Endocrinology (Baltimore, Md.). Nov, 2007 | Pubmed ID: 17666589

Preparation of Acute Brain Slices Using an Optimized N-Methyl-D-glucamine Protective Recovery Method

Jonathan T. Ting*¹, Brian R. Lee*¹, Peter Chong¹, Gilberto Soler-Llavina¹, Charles Cobbs², Christof Koch¹, Hongkui Zeng¹, Ed Lein¹

¹Cell Types Program, Allen Institute for Brain Science, ²The Ben and Catherine Ivy Center for Advanced Brain Tumor Treatment, Swedish Neuroscience Institute

JoVE 53825

Hongkui Zeng has not added a biography.

Publications

Preparation of Acute Brain Slices Using an Optimized N-Methyl-D-glucamine Protective Recovery Method

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