Jeremy C. Simpson

Publications

• Cell3: a New Vision for Study of the Endomembrane System in Mammalian Cells
  Bioscience Reports. Dec, 2021  |   Pubmed ID: 34874399
• Cell3: A New Vision for Study of the Endomembrane System in Mammalian Cells
  Bioscience Reports. Nov, 2021  |   Pubmed ID: 34793591
• 2D-GolgiTrack-a Semi-automated Tracking System to Quantify Morphological Changes and Dynamics of the Golgi Apparatus and Golgi-derived Membrane Tubules
  Medical & Biological Engineering & Computing. Nov, 2021  |   Pubmed ID: 34783979
• Multiparametric Nanoparticle-induced Toxicity Readouts with Single Cell Resolution in HepG2 Multicellular Tumour Spheroids
  Nanoscale. Oct, 2021  |   Pubmed ID: 34661590
• A Novel Automated Image Analysis Pipeline for Quantifying Morphological Changes to the Endoplasmic Reticulum in Cultured Human Cells
  BMC Bioinformatics. Sep, 2021  |   Pubmed ID: 34496765
• Inactivation Efficacy of Atmospheric Air Plasma and Airborne Acoustic Ultrasound Against Bacterial Biofilms
  Scientific Reports. 01, 2021  |   Pubmed ID: 33504900
• A Novel High-content Screening Approach for the Elucidation of C. Jejuni Biofilm Composition and Integrity
  BMC Microbiology. 01, 2021  |   Pubmed ID: 33397288
• Emerging Roles for Rho GTPases Operating at the Golgi Complex
  Small GTPases. Sep-Nov, 2021  |   Pubmed ID: 32881632
• Antimicrobial Effects of Airborne Acoustic Ultrasound and Plasma Activated Water from Cold and Thermal Plasma Systems on Biofilms
  Scientific Reports. 10, 2020  |   Pubmed ID: 33057158
• RNA Interference Screening Identifies Novel Roles for RhoBTB1 and RhoBTB3 in Membrane Trafficking Events in Mammalian Cells
  Cells. 04, 2020  |   Pubmed ID: 32354068
• Modification of the Mammalian Endomembrane System in Healthy and Diseased Cells
  International Journal of Molecular Sciences. Mar, 2020  |   Pubmed ID: 32244909
• Characterisation of GLUT4 Trafficking in HeLa Cells: Comparable Kinetics and Orthologous Trafficking Mechanisms to 3T3-L1 Adipocytes
  PeerJ. 2020  |   Pubmed ID: 32185116
• SCLpred-EMS: Subcellular Localization Prediction of Endomembrane System and Secretory Pathway Proteins by Deep N-to-1 Convolutional Neural Networks
  Bioinformatics (Oxford, England). 06, 2020  |   Pubmed ID: 32142105
• Precise Targeting of MiRNA Sites Restores CFTR Activity in CF Bronchial Epithelial Cells
  Molecular Therapy : the Journal of the American Society of Gene Therapy. 04, 2020  |   Pubmed ID: 32059764
• Acquisition of Fluoroquinolone Resistance Leads to Increased Biofilm Formation and Pathogenicity in Campylobacter Jejuni
  Scientific Reports. 12, 2019  |   Pubmed ID: 31796849
• NeurodegenERation: The Central Role for ER Contacts in Neuronal Function and Axonopathy, Lessons From Hereditary Spastic Paraplegias and Related Diseases
  Frontiers in Neuroscience. 2019  |   Pubmed ID: 31680803
• Rab35 Controls Cilium Length, Function and Membrane Composition
  EMBO Reports. 10, 2019  |   Pubmed ID: 31432619
• The Challenges and Possibilities of Extracellular Vesicles As Therapeutic Vehicles
  European Journal of Pharmaceutics and Biopharmaceutics : Official Journal of Arbeitsgemeinschaft Fur Pharmazeutische Verfahrenstechnik E.V. Nov, 2019  |   Pubmed ID: 31419585
• Multitasking Rab Proteins in Autophagy and Membrane Trafficking: A Focus on Rab33b
  International Journal of Molecular Sciences. Aug, 2019  |   Pubmed ID: 31408960
• A High-Throughput Automated Confocal Microscopy Platform for Quantitative Phenotyping of Nanoparticle Uptake and Transport in Spheroids
  Small (Weinheim an Der Bergstrasse, Germany). 09, 2019  |   Pubmed ID: 31334922
• Computational and Experimental Analysis of Bioactive Peptide Linear Motifs in the Integrin Adhesome
  PloS One. 2019  |   Pubmed ID: 30689642
• Rapid Growth Cone Uptake and Dynein-Mediated Axonal Retrograde Transport of Negatively Charged Nanoparticles in Neurons Is Dependent on Size and Cell Type
  Small (Weinheim an Der Bergstrasse, Germany). 01, 2019  |   Pubmed ID: 30565853
• Bioinspired Star-Shaped Poly(l-lysine) Polypeptides: Efficient Polymeric Nanocarriers for the Delivery of DNA to Mesenchymal Stem Cells
  Molecular Pharmaceutics. 05, 2018  |   Pubmed ID: 29590755
• Heritable Skeletal Disorders Arising from Defects in Processing and Transport of Type I Procollagen from the ER: Perspectives on Possible Therapeutic Approaches
  Handbook of Experimental Pharmacology. 2018  |   Pubmed ID: 29071510
• Roles for the VCP Co-factors Npl4 and Ufd1 in Neuronal Function in Drosophila Melanogaster
  Journal of Genetics and Genomics = Yi Chuan Xue Bao. Oct, 2017  |   Pubmed ID: 29037990
• Characterization of Carboxylate Nanoparticle Adhesion with the Fungal Pathogen Candida Albicans
  Nanoscale. Oct, 2017  |   Pubmed ID: 29019498
• Functional Characterisation of the YIPF Protein Family in Mammalian Cells
  Histochemistry and Cell Biology. Apr, 2017  |   Pubmed ID: 27999994
• Systematic Functional Analysis of the Ras GTPase Family Unveils a Conserved Network Required for Anterograde Protein Trafficking
  Proteomics. 01, 2017  |   Pubmed ID: 27957805
• Rho GTPases Operating at the Golgi Complex: Implications for Membrane Traffic and Cancer Biology
  Tissue & Cell. Apr, 2017  |   Pubmed ID: 27720426
• Genome-Wide SiRNA Screening Using Forward Transfection: Identification of Modulators of Membrane Trafficking in Mammalian Cells
  Methods in Molecular Biology (Clifton, N.J.). 2016  |   Pubmed ID: 27581283
• A Systematic High-Content Screening Microscopy Approach Reveals Key Roles for Rab33b, OATL1 and Myo6 in Nanoparticle Trafficking in HeLa Cells
  Scientific Reports. 07, 2016  |   Pubmed ID: 27374232
• Lysosome Triggered Near-infrared Fluorescence Imaging of Cellular Trafficking Processes in Real Time
  Nature Communications. Mar, 2016  |   Pubmed ID: 26927507
• Implementation of the Rank-Weighted Co-localization (RWC) Algorithm in Multiple Image Analysis Platforms for Quantitative Analysis of Microscopy Images
  Source Code for Biology and Medicine. 2016  |   Pubmed ID: 26884809
• High-content Analysis of Rab Protein Function at the ER-Golgi Interface
  Bioarchitecture. 2015  |   Pubmed ID: 26693811
• A High-content Screening Microscopy Approach to Dissect the Role of Rab Proteins in Golgi-to-ER Retrograde Trafficking
  Journal of Cell Science. Jul, 2015  |   Pubmed ID: 25999475
• High-content Analysis for Drug Delivery and Nanoparticle Applications
  Drug Discovery Today. Aug, 2015  |   Pubmed ID: 25908578
• A Fluorescent Live Imaging Screening Assay Based on Translocation Criteria Identifies Novel Cytoplasmic Proteins Implicated in G Protein-coupled Receptor Signaling Pathways
  Molecular & Cellular Proteomics : MCP. May, 2015  |   Pubmed ID: 25759509
• Hydroxyapatite and Fluorapatite Coatings on Dental Screws: Effects of Blast Coating Process and Biological Response
  Journal of Materials Science. Materials in Medicine. Jan, 2015  |   Pubmed ID: 25578701
• Biocompatibility of Ferroelectric Lithium Niobate and the Influence of Polarization Charge on Osteoblast Proliferation and Function
  Journal of Biomedical Materials Research. Part A. Aug, 2015  |   Pubmed ID: 25504748
• Trajectory-based Co-localization Measures for Nanoparticle-cell Interaction Studies
  Small (Weinheim an Der Bergstrasse, Germany). May, 2015  |   Pubmed ID: 25504742
• The Trials and Tubule-ations of Rab6 Involvement in Golgi-to-ER Retrograde Transport
  Biochemical Society Transactions. Oct, 2014  |   Pubmed ID: 25233431
• HGF Induces Epithelial-to-mesenchymal Transition by Modulating the Mammalian Hippo/MST2 and ISG15 Pathways
  Journal of Proteome Research. Jun, 2014  |   Pubmed ID: 24766643
• Endoplasmic Reticulum Stress-activated Transcription Factor ATF6α Requires the Disulfide Isomerase PDIA5 to Modulate Chemoresistance
  Molecular and Cellular Biology. May, 2014  |   Pubmed ID: 24636989
• RNAi-mediated Inhibition of Apoptosis Fails to Prevent Cationic Nanoparticle-induced Cell Death in Cultured Cells
  Nanomedicine (London, England). Aug, 2014  |   Pubmed ID: 24359549
• Actin in Action: Imaging Approaches to Study Cytoskeleton Structure and Function
  Cells. Nov, 2013  |   Pubmed ID: 24709877
• High-content Screening and Analysis of the Golgi Complex
  Methods in Cell Biology. 2013  |   Pubmed ID: 24295313
• Time Resolved Study of Cell Death Mechanisms Induced by Amine-modified Polystyrene Nanoparticles
  Nanoscale. Nov, 2013  |   Pubmed ID: 24108393
• Human Diseases Associated with Form and Function of the Golgi Complex
  International Journal of Molecular Sciences. Sep, 2013  |   Pubmed ID: 24025425
• A Real-time Impedance Based Method to Assess Rhodococcus Equi Virulence
  PloS One. 2013  |   Pubmed ID: 23555995
• Anti-prion Drug MPPIg5 Inhibits PrP(C) Conversion to PrP(Sc)
  PloS One. 2013  |   Pubmed ID: 23383136
• Quantitative Image Analysis Approaches for Probing Rab GTPase Localization and Function in Mammalian Cells
  Biochemical Society Transactions. Dec, 2012  |   Pubmed ID: 23176486
• Quantifying Size-dependent Interactions Between Fluorescently Labeled Polystyrene Nanoparticles and Mammalian Cells
  Journal of Nanobiotechnology. Sep, 2012  |   Pubmed ID: 23006133
• Chemical Chaperones Improve Protein Secretion and Rescue Mutant Factor VIII in Mice with Hemophilia A
  PloS One. 2012  |   Pubmed ID: 22973456
• A Method for Improved Clustering and Classification of Microscopy Images Using Quantitative Co-localization Coefficients
  BMC Research Notes. Jun, 2012  |   Pubmed ID: 22681635
• Genome-wide RNAi Screening Identifies Human Proteins with a Regulatory Function in the Early Secretory Pathway
  Nature Cell Biology. Jun, 2012  |   Pubmed ID: 22660414
• High-speed Imaging of Rab Family Small GTPases Reveals Rare Events in Nanoparticle Trafficking in Living Cells
  ACS Nano. Feb, 2012  |   Pubmed ID: 22276691
• Dual Channel Rank-based Intensity Weighting for Quantitative Co-localization of Microscopy Images
  BMC Bioinformatics. Oct, 2011  |   Pubmed ID: 22017789
• Quantitative Proteomics and Dynamic Imaging of the Nucleolus Reveal Distinct Responses to UV and Ionizing Radiation
  Molecular & Cellular Proteomics : MCP. Oct, 2011  |   Pubmed ID: 21778410
• Cationic Nanoparticles Induce Caspase 3-, 7- and 9-mediated Cytotoxicity in a Human Astrocytoma Cell Line
  Nanotoxicology. Dec, 2011  |   Pubmed ID: 21142842
• Role of Varp, a Rab21 Exchange Factor and TI-VAMP/VAMP7 Partner, in Neurite Growth
  EMBO Reports. Oct, 2009  |   Pubmed ID: 19745841
• Screening the Secretion Machinery: High Throughput Imaging Approaches to Elucidate the Secretory Pathway
  Seminars in Cell & Developmental Biology. Oct, 2009  |   Pubmed ID: 19660568