Tao Ye

Publications

• Analysis of the Sea Urchin Genome Highlights Contrasting Trends of Genomic and Regulatory Evolution in Deuterostomes
  Cell Genomics. Apr, 2023  |   Pubmed ID: 37082140
• Epigenomic Mapping Identifies an Enhancer Repertoire That Regulates Cell Identity in Bladder Cancer Through Distinct Transcription Factor Networks
  Oncogene. May, 2023  |   Pubmed ID: 36944729
• Identification of New Candidate Drugs for Primary Sjögren's Syndrome Using a Drug Repurposing Transcriptomic Approach
  Rheumatology (Oxford, England). Mar, 2023  |   Pubmed ID: 36869684
• Distinct Mechanisms Underlie H2O2 Sensing in C. Elegans Head and Tail
  PloS One. 2022  |   Pubmed ID: 36173997
• Concurrent CDX2 Cis-deregulation and UBTF::ATXN7L3 Fusion Define a Novel High-risk Subtype of B-cell ALL
  Blood. Jun, 2022  |   Pubmed ID: 35316324
• Waves of Sumoylation Support Transcription Dynamics During Adipocyte Differentiation
  Nucleic Acids Research. Feb, 2022  |   Pubmed ID: 35100417
• Androgen Receptor-mediated Transcriptional Repression Targets Cell Plasticity in Prostate Cancer
  Molecular Oncology. Jul, 2022  |   Pubmed ID: 34919781
• The Related Coactivator Complexes SAGA and ATAC Control Embryonic Stem Cell Self-renewal Through Acetyltransferase-independent Mechanisms
  Cell Reports. Aug, 2021  |   Pubmed ID: 34433046
• Extensive NEUROG3 Occupancy in the Human Pancreatic Endocrine Gene Regulatory Network
  Molecular Metabolism. Nov, 2021  |   Pubmed ID: 34352411
• CD4 T Cells Require Ikaros to Inhibit Their Differentiation Toward a Pathogenic Cell Fate
  Proceedings of the National Academy of Sciences of the United States of America. Apr, 2021  |   Pubmed ID: 33893236
• Nutrigenomic Analyses Reveal MiRNAs and MRNAs Affected by Feed Restriction in the Mammary Gland of Midlactation Dairy Cows
  PloS One. 2021  |   Pubmed ID: 33857151
• Histone H2Bub1 Deubiquitylation is Essential for Mouse Development, but Does Not Regulate Global RNA Polymerase II Transcription
  Cell Death and Differentiation. Aug, 2021  |   Pubmed ID: 33731875
• TBPL2/TFIIA Complex Establishes the Maternal Transcriptome Through Oocyte-specific Promoter Usage
  Nature Communications. Dec, 2020  |   Pubmed ID: 33353944
• Temozolomide-Induced RNA Interactome Uncovers Novel LncRNA Regulatory Loops in Glioblastoma
  Cancers. Sep, 2020  |   Pubmed ID: 32927769
• Unstable TTTTA/TTTCA Expansions in MARCH6 Are Associated with Familial Adult Myoclonic Epilepsy Type 3
  Nature Communications. Oct, 2019  |   Pubmed ID: 31664039
• Disrupting the IL-36 and IL-23/IL-17 Loop Underlies the Efficacy of Calcipotriol and Corticosteroid Therapy for Psoriasis
  JCI Insight. Jan, 2019  |   Pubmed ID: 30674716
• Homozygous TAF8 Mutation in a Patient with Intellectual Disability Results in Undetectable TAF8 Protein, but Preserved RNA Polymerase II Transcription
  Human Molecular Genetics. Jun, 2018  |   Pubmed ID: 29648665
• Cockayne's Syndrome A and B Proteins Regulate Transcription Arrest After Genotoxic Stress by Promoting ATF3 Degradation
  Molecular Cell. Dec, 2017  |   Pubmed ID: 29225035
• Dual Effects of Constitutively Active Androgen Receptor and Full-length Androgen Receptor for N-cadherin Regulation in Prostate Cancer
  Oncotarget. Sep, 2017  |   Pubmed ID: 29069764
• Paralogs Are New Members of the PiRNA Pathway Controlling Retrotransposon Suppression
  Journal of Cell Science. Apr, 2017  |   Pubmed ID: 28254886
• Genome-wide Analysis of RARβ Transcriptional Targets in Mouse Striatum Links Retinoic Acid Signaling with Huntington's Disease and Other Neurodegenerative Disorders
  Molecular Neurobiology. Jul, 2017  |   Pubmed ID: 27405468
• KAT2A/KAT2B-targeted Acetylome Reveals a Role for PLK4 Acetylation in Preventing Centrosome Amplification
  Nature Communications. Oct, 2016  |   Pubmed ID: 27796307
• Hepatitis C Virus-Induced Upregulation of MicroRNA MiR-146a-5p in Hepatocytes Promotes Viral Infection and Deregulates Metabolic Pathways Associated with Liver Disease Pathogenesis
  Journal of Virology. Jul, 2016  |   Pubmed ID: 27147737
• Tip60 Complex Binds to Active Pol II Promoters and a Subset of Enhancers and Co-regulates the C-Myc Network in Mouse Embryonic Stem Cells
  Epigenetics & Chromatin. 2015  |   Pubmed ID: 26550034
• Endogenous SiRNAs and PiRNAs Derived from Transposable Elements and Genes in the Malaria Vector Mosquito Anopheles Gambiae
  BMC Genomics. Apr, 2015  |   Pubmed ID: 25879960
• Rfx6 Maintains the Functional Identity of Adult Pancreatic β Cells
  Cell Reports. Dec, 2014  |   Pubmed ID: 25497096
• The Oncogenic MicroRNA Hsa-miR-155-5p Targets the Transcription Factor ELK3 and Links It to the Hypoxia Response
  PloS One. 2014  |   Pubmed ID: 25401928
• UVB Induces a Genome-wide Acting Negative Regulatory Mechanism That Operates at the Level of Transcription Initiation in Human Cells
  PLoS Genetics. Jul, 2014  |   Pubmed ID: 25058334
• Mof-associated Complexes Have Overlapping and Unique Roles in Regulating Pluripotency in Embryonic Stem Cells and During Differentiation
  ELife. Jun, 2014  |   Pubmed ID: 24898753
• Phosphorylation of the Retinoic Acid Receptor RARγ2 is Crucial for the Neuronal Differentiation of Mouse Embryonic Stem Cells
  Journal of Cell Science. May, 2014  |   Pubmed ID: 24569880
• Genes Involved in Cell Adhesion and Signaling: a New Repertoire of Retinoic Acid Receptor Target Genes in Mouse Embryonic Fibroblasts
  Journal of Cell Science. Feb, 2014  |   Pubmed ID: 24357724
• Genome Sequence of Halomonas Sp. Strain A3H3, Isolated from Arsenic-Rich Marine Sediments
  Genome Announcements. Oct, 2013  |   Pubmed ID: 24115546
• Homeostasis in Intestinal Epithelium is Orchestrated by the Circadian Clock and Microbiota Cues Transduced by TLRs
  Cell. May, 2013  |   Pubmed ID: 23663780
• Genetic Analysis of the Biosynthesis of 2-methoxy-3-isobutylpyrazine, a Major Grape-derived Aroma Compound Impacting Wine Quality
  Plant Physiology. Jun, 2013  |   Pubmed ID: 23606597
• Widespread Negative Response Elements Mediate Direct Repression by Agonist-liganded Glucocorticoid Receptor
  Cell. Apr, 2011  |   Pubmed ID: 21496643
• SeqMINER: an Integrated ChIP-seq Data Interpretation Platform
  Nucleic Acids Research. Mar, 2011  |   Pubmed ID: 21177645