Method Article

Mosaic Analysis of Gene Function in Postnatal Mouse Brain Development by Using Virus-based Cre Recombination

DOI:

10.3791/2823

August 1st, 2011

In This Article

Summary

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An in vivo method to test gene function in postnatal brain is described. Recombinant AAVs expressing Cre and/or a fluorescent protein are injected into neonatal mouse brain. Mosaic gene inactivation and sparse neuronal labeling are achieved, allowing rapid analysis of gene function in processes critical to neural circuit development.

Abstract

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Normal brain function relies not only on embryonic development when major neuronal pathways are established, but also on postnatal development when neural circuits are matured and refined. Misregulation at this stage may lead to neurological and psychiatric disorders such as autism and schizophrenia1,2. Many genes have been studied in the prenatal brain and found crucial to many developmental processes3-5. However, their function in the postnatal brain is largely unknown, partly because their deletion in mice often leads to lethality during neonatal development, and partly because their requirement in early development hampers the postnatal analysis. To overcome these obstacles, floxed alleles of these genes are currently being generated in mice 6. When combined with transgenic alleles that express Cre recombinase in specific cell types, conditional deletion can be achieved to study gene function in the postnatal brain. However, this method requires additional alleles and extra time (3-6 months) to generate the mice with appropriate genotypes, thereby limiting the expansion of the genetic analysis to a large scale in the mouse brain.

Here we demonstrate a complementary approach that uses virally-expressed Cre to study these floxed alleles rapidly and systematically in postnatal brain development. By injecting recombinant adeno-associated viruses (rAAVs)7,8 encoding Cre into the neonatal brain, we are able to delete the gene of interest in different regions of the brain. By controlling the viral titer and coexpressing a fluorescent protein marker, we can simultaneously achieve mosaic gene inactivation and sparse neuronal labeling. This method bypasses the requirement of many genes in early development, and allows us to study their cell autonomous function in many critical processes in postnatal brain development, including axonal and dendritic growth, branching, and tiling, as well as synapse formation and refinement. This method has been used successfully in our own lab (unpublished results) and others8,9, and can be extended to other viruses, such as lentivirus 9, as well as to the expression of shRNA or dominant active proteins 10. Furthermore, by combining this technique with electrophysiology as well as recently-developed optical imaging tools 11, this method provides a new strategy to study how genetic pathways influence neural circuit development and function in mice and rats.

Protocol

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1. Preparing viruses for injection

  1. rAAVs were purchased from the recommended commercial vendor, but they can also be produced in one's own lab (see discussion below). The virus solution is typically produced at a titer of ˜1x1012 genome copies per milliliter (GC/ml) and may be used at full titer to manipulate a large number of cells. Alternatively, they may be diluted to produce the desired level of sparse labeling. The appropriate dilution must be determined by the user, but a 1:10 dilution is recommended to start.
  2. Thaw viruses on ice immediately before use. Transfer the desired pre-dilution volume of virus solution into a small (˜250....

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Discussion

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The neonatal viral injection method presented here provides a simple and rapid way to generate in vivo mosaics for the study of postnatal brain development. The method takes advantage of floxed alleles that are currently available as well as those that are being made through the High Throughput Gene Targeting project6. Compared to the use of transgenic expression of Cre, this method provides a rapid way to test gene function in various cell types, as mice carrying the floxed alleles can be used dire.......

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Disclosures

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No conflicts of interest declared.

Acknowledgements

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This work is supported by an RO1 grant from NIH (NINDS).

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Materials

List of materials used in this article
NameCompanyCatalog NumberComments
rAAV8-Cre, -GFP, -DsRed,Vector Biolabs#7060, #7061, custom orderhttp://www.vectorbiolabs.com
Harvard Pump 11 PlusHarvard Apparatus#702208(No foot pedal port)
Retinal Pigment Epithelium Injection KitWorld Precision Instruments, Inc.RPE-KITContains connective tubing, injection needles (36G), and needle holder
NanoFil Syringe, 100μlWorld Precision Instruments, Inc.NANOFIL-100Includes reusable loading needle
D-PBSInvitrogen14040-117
GFP antibodyAvesGFP-1020
DsRed antibodyClontech Laboratories632496
Heating BlockVWR international97042-610
ROSA26R mouseJackson Laboratory003309

References

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  1. Geschwind, D. H., Levitt, P. Autism spectrum disorders: developmental disconnection syndromes. Curr Opin Neurobiol. 17, 103-111 (2007).
  2. Giedd, J. N., Rapoport, J. L. Structural MRI of pediatric brain development: what have we learned and where are we goin....

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Tags

Mosaic AnalysisVirus based Cre RecombinationPostnatal Brain DevelopmentConditional Gene DeletionAdeno associated Virus InjectionFluorescent Protein LabelingImmunofluorescence MicroscopyNeural Circuit DevelopmentAxonal Dendritic GrowthSynapse Formation Refinement

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