This protocol explains how to deposit and manipulate C60 molecules on graphene such that 1D and quasi-1D C60 chain structures can be realized. The techniques in this experiment were developed to address the need to guide adsorbates into desirable configurations without having to rely on manual manipulation, which is slow and can require great effort. The procedures described here rely on the use of a high vacuum system with a sample preparation area capable of supporting molecular deposition and thermal annealing of the samples. STM is used to characterize the samples, but other molecular resolution techniques may be applied.