Precise staging of embryos is critical due to the rapid maturation of functional properties over the time course of just several hours. Several issues complicate this staging. First, most researchers use timed egg lays to stage embryos, but the egg laying time can vary enormously from animal to animal in different conditions (Broadie et al. 1992). In particular, females on a limited diet tend to retain fertilized eggs for prolonged periods prior to laying. It is therefore critical to “clear” females by feeding on a rich yeast diet for at least 2 days prior to collecting eggs (Broadie et al. 1992). Moreover, older females also retain eggs for a longer period prior to laying. An older female may routinely lay eggs only a couple hours prior to their hatching. It is therefore important to use young females (<7 days) for the most consistent laying times (Broadie et al. 1992). Second, during late embryo stages, it is difficult to stage embryos solely by morphological criteria. Most clear staging features are complete by <16 hrs AEL (Campos-Ortega and Hartenstein, 1985), but most functional development occurs >16 hrs AEL. Late developmental features (e.g. tracheal air-filling, tanning of cuticle) are few and tend to be less temporally restricted. For these reasons, we recommend a combinatorial approach: collect eggs from 1-2 hr timed lays, stage to well-defined early morphological events of <30 minutes in duration (e.g. gastrulation, dorsal closure, 3-part gut; Campos-Ortega and Hartenstein, 1985) and then incubate to the desired age in a well-controlled 25°C incubator.
The manual dissection and glue application require fine motor skills under a microscope that few people initially possess. These skills must be developed over time. Experimenters should be willing to commit a minimum of several weeks of daily dedicated practice before expecting a high frequency of success. Preparations suitable for microscopic examination of the CNS and some ventral neuromuscular junctions should be achievable relatively quickly, while healthy preparations suitable for electrophysiology will typically require more effort.