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DOI: 10.3791/58472-v
This article presents a method for producing large amounts of recombinant RNA in Escherichia coli using a chimeric RNA scaffold. The circular RNA produced facilitates purification to homogeneity, making it suitable for various applications.
Here, we present a protocol to produce large amounts of recombinant RNA in Escherichia coli by co-expressing a chimeric RNA that contains the RNA of interest in a viroid scaffold and a plant tRNA ligase. The main product is a circular molecule that facilitates purification to homogeneity.
This method can help to produce large amounts of recombinant RNAs of interest for application in research or industry. The main advantage is that recombinant RNA is produced in Escherichia coli in a cheap process that can be easily scaled up. Importantly, the RNA is produced on a circular RNA scaffold, which facilitates purification to homogeneity.
In contrast to DNA or proteins, RNAs of interest are not easily produced in large amounts in biofactory systems, such an Escherichia coli culture. Our method is based on co-expression of the RNA of interest inserted into a highly stable circular scaffold and applying a ligase that mediates RNA circularization. The circular RNA scaffold derives from a patented viroid.
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