$$\rightleftharpoonup{xx}$$
$$\longleftharp{xx}$$,
$$\longrightharp{xx}$$,
The soilborne fungi that make up the Fusarium oxysporum species complex (FOSC) are impactful hemibiotrophic plant pathogens that can cause serious disease and yield loss in a diverse range of crops1. Fusarium wilt of watermelon, caused by F. oxysporum f. sp. niveum (Fon), has been increasing in scope, incidence, and severity across the world in the last several decades2,3. In seedlings, the symptoms of Fusarium wilt often resemble damping-off. In older plants, the foliage becomes gray, chlorotic, and necrotic. Eventually, wilting of the plants progresses to full plant collapse and death4. Direct yield loss occurs due to the symptoms and plant death, while indirect yield loss can occur due to sun damage caused by the elimination of the foliar canopy5. Sexual reproduction and associated reproductive structures have never been observed in F. oxysporum. However, the pathogen produces two types of asexual spores, micro- and macroconidia, as well as larger, long-term survival structures called chlamydospores, which can survive in the soil for many years6.
The FOSC is classified into formae speciales based on observed host ranges, usually limited to one or a few host species1. Although recent research has indicated that this species complex may be a composite of 15 different species, the particular species that infect watermelon are currently unknown7. F. oxysporum f. sp. niveum (Fon) is the name for the groups of strains that exclusively infect Citrullus lanatus or the domesticated watermelon8,9. F. oxysporum strains within most pathogenic formae speciales display certain levels of diversity with regard to their genetic components and virulence toward a host species. For instance, one strain may infect all cultivars of a host, whereas another may only infect the more susceptible cultivars. To account for such variation, these groups are informally classified into races based on evolutionary relationships or common phenotypic characteristics. Within Fon, four races (0, 1, 2, and 3) have been characterized based on their pathogenicity against a set of select watermelon cultivars, with the discovery of race 3 occurring recently10.
Despite this apparent diversity, the morphologies of spores or hyphae are not distinguishable between the races of Fon races, meaning that molecular or phenotypic assays are needed to identify an isolate's unique race11. Molecular research has identified some genetic differences. For example, the role of Secreted in Xylem (SIX) effectors has been studied for years in F. oxysporum, and some of these effectors have been located on the chromosomes exchanged during horizontal gene transfer12. For example, SIX6 is found in Fon races 0 and 1 but not in race 213. SIX effectors have been implicated in the pathogenicity of F. oxysporum f. sp. lycopersici and F. oxysporum f. sp. cubense, which cause Fusarium wilt on tomato and banana, respectively14,15,16,17. The analysis of SIX effector profiles among strains of F. oxysporum f. sp. spiniciae, the Fusarium wilt pathogen on spinach, has enabled classification that accurately reflects genetic and phenotypic diversity18. However, the differences between virulence mechanisms of Fon races are currently not entirely understood, and molecular assays developed upon their use have shown inconsistent and inaccurate results19. Therefore, phenotypic results from infection assays are currently the best way to classify isolates.
F. oxysporum initially infects hosts through the roots before making its way up the xylem20. This makes direct inoculation of the roots of a given host cultivar an effective way to perform race-typing and is the basis of the root-dip and tray-dip inoculation methods21. When not infecting a host, F. oxysporum resides in the soil and can remain dormant for years. Growing susceptible watermelon cultivars in soil from a field of interest is one way to test for the presence of Fon. Expanding this method to include cultivars of different known levels of resistance in soil that is deliberately infested with Fon is also a good way to perform race-typing (Table 1) and is the basis of the infested kernel seeding method. The modified tray-dip method is a variation of the original tray-dip method that allows for a high-throughput race-typing where many plants and field isolates can be investigated rapidly22. Important factors of a quick and successful race-typing bioassay include using cultivars that have documented differences in resistance to the different pathogen races, ensuring that the inoculum is both biologically active and abundant during infection, maintaining an environment that is both conducive for the pathogen and host, and using a consistent rating system for severity or incidence of disease. This paper describes the root-dip23,24, infested kernel seeding25,26, and modified tray-dip22 methods for phenotypic race-typing based on the principles described above.