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Compound effects on acute seizures
Behavioral seizures are recorded if they occur during drug injection (DI) or during the subsequent AM/PM seizure handling/monitoring sessions. Seizures observed during handling seizures can be presented as a heat map, which is shown in Figure 2 for LEV (350 mg/kg). For the analysis of seizure burden, the average of the final (day 7) cumulative seizure burden values for the vehicle-treated group are taken and compared by the Mann-Whitney U test to the compound treated group (seizure burden values include those collected at the post-injection observation). For compound efficacy, a Fisher's exact test determines if there is a statistical difference in efficacy between vehicle- and drug-treated groups. Similarly, tolerability data are analyzed with Fisher's exact test. Bodyweight analysis is performed by repeated-measures ANOVA to determine changes over the course of the experiment, as well as differences between compound- and vehicle-treated mice.

Figure 2: A heat map of behavioral seizures following testing with vehicle (0.5% methylcellulose) or LEV (350 mg/kg). Twice daily injections occurred 1 h prior to handling and seizure observations. Behavioral seizures were recorded if they occurred during drug injection (DI) or during the subsequent AM/PM seizure handling/monitoring sessions. LEV (350 mg/kg) significantly reduces seizures observed during handling sessions (35.9% of vehicle seizure burden) over the 5 day observation period. The heat map is created by picturing seizures stage 1-3 in green, 4 in yellow, and 5 in orange. This new figure was created from a published dataset19. Please click here to view a larger version of this figure.
Chronic epilepsy
Apart from the reported seizure burden in the first week pi, there are several readouts that could be useful depending on the study and hypothesis. If animals are kept long-term, a subset of infected animals will develop spontaneous epileptic seizures at several weeks pi, which occur less frequently than acute seizures and, thus, require EEG recording. In order to record EEG from mice, electrodes need to be implanted in a stereotaxic surgery24. Figure 3 shows various epileptic events in the chronic phase by EEG recording in mice infected with TMEV8.

Figure 3: Typical EEG traces in the chronic phase (14 weeks pi) following DA virus infection in mice. (A-C) Representative EEG events in which no behavioral motor correlate was seen, i.e., (A) single spikes, (B) spike clusters, (C) as well as an electrographic, presumably focal seizure. (D-F) Representative EEG events with behavioral correlates. The mouse illustrated in D had seizure-like events with myoclonic twitches (indicated by "M", accompanied by movement artifacts), stereotyped movements (indicated by "head press", when the mouse pressed the head flatly on the ground), or behavioral arrest; "Scr" describes a movement artifact of scratching, (E) and (F) show typical EEG alterations during generalized convulsive seizures: (E) a Racine stage 3 seizure with a duration of 22 s and 1 Hz, and (F) a stage 5 seizure with a duration of 34 s and 5.4 Hz. This figure has been published before8 and is reprinted with permission from Elsevier. Please click here to view a larger version of this figure.
Histology
Since epilepsy and seizures are usually accompanied by hippocampal pathology in patients, which is recapitulated in experimental models, most laboratories also analyze hippocampal changes or the effect of a potential antiseizure treatment on pathology. Commonly analyzed parameters include hippocampal neurodegeneration and shrinking, as well as inflammation by labeling for specific immune cell populations. For such analyses, at the end of the experiment, mice are deeply anesthetized until breathing arrest occurs and the heart rate significantly slows down or shows arrhythmia. Blood is removed by intracardial perfusion of PBS followed by 4% paraformaldehyde (PFA)25 to fixate the tissue. The tissue is then processed by cryosectioning and (immune-)staining26, followed by microscopic analyses.

Figure 4: Hippocampal degeneration in epileptic TMEV-infected mice. (A,B) Cresyl violet-stained coronal sections show normal cytoarchitecture in a (A) control (PBS) mouse and hippocampal degeneration in a (B) TMEV mouse at 2 months pi. Note: Enlarged lateral ventricles, collapse of the alveus, and thinning of the pyramidal cell layer. (C) Quantification of this damage shows a significant decrease in hippocampal area and a corresponding increase in the ventricular area of TMEV mice (N = 7) vs. PBS mice (N = 6; data are mean ± SEM; p < 0.001; Student's t-test). (D,E) NeuN labeling further illustrates the magnitude of neuronal cell loss in sections taken at 6 months pi. Arrows indicate regions with complete pyramidal cell loss. (E) The dentate gyrus appears to be relatively intact even in epileptic mice. Scale bar = (A,B) 2 mm; (D,E) 0.5 mm. This figure has been published before6 and is reprinted with permission from Oxford University Press. Please click here to view a larger version of this figure.

Figure 5: Representative photomicrographs of different severity of T cell infiltration due to acute encephalitis at 7 days postinfection. Serial sections containing the ipsilateral dorsal hippocampus were stained with antibodies against CD3 in order to label T-lymphocytes. (A,D) A normal hippocampus without T cell infiltration as it appeared in mock-infected animals. (B, E) Moderate T cell infiltration as is seen in the majority of TMEV-infected mice. (C, F) A severe infiltration of T lymphocytes, which was only seen in some of the infected mice. This figure has been published before8 and is reprinted with permission from Elsevier. Please click here to view a larger version of this figure.
Supplementary File 1: The supplementary file consists of the form used for compound testing in the TMEV model. Page 1 gives an overview of the experimental setup. Information on the compound, vehicle, and compound solution preparation is recorded on pages 1-2. Compound application is recorded on page 3. The scoring sheets on pages 4-5 are used for recording the seizures observed and quantified by the experimenter performing the compound injection. On page 4, data can be collected for cages 1-4 of 5 mice each, and on page 5, cages 5-8 can be recorded, which is the standard number of animals for compound testing in our hands. The scoring sheets on pages 6-7 are used by the blinded observer who is performing the observation, handling, and gentle cage shaking 1 h after every compound injection. Again, seizure scores can be noted for eight cages in total on these exemplary score sheets. The last page 8 can be used for recording any other observations or notes. Please click here to view a larger version of this figure.