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JoVE Journal
Neuroscience
3D Scanning Technology Bridging Microcircuits and Macroscale Brain Images in 3D Novel Embedding O...
3D Scanning Technology Bridging Microcircuits and Macroscale Brain Images in 3D Novel Embedding O...
JoVE Journal
Neuroscience
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JoVE Journal Neuroscience
3D Scanning Technology Bridging Microcircuits and Macroscale Brain Images in 3D Novel Embedding Overlapping Protocol

3D Scanning Technology Bridging Microcircuits and Macroscale Brain Images in 3D Novel Embedding Overlapping Protocol

Full Text
7,682 Views
10:14 min
May 12, 2019

DOI: 10.3791/58911-v

Saya Ide1, Motoki Kajiwara1, Hirohiko Imai2, Masanori Shimono1

1Graduate School of Medicine and Faculty of Medicine,Kyoto University, 2Graduate School of Informatics,Kyoto University

Overview

This article presents a novel experimental protocol leveraging 3D scanning technology which integrates both macro-scale brain anatomy imaged by MRI (>100 μm) and micro-scale neuronal distributions using immunohistochemistry and multielectrode arrays (~10 μm). This approach enables precise mapping of neural structures and their respective functions.

Key Study Components

Area of Science

  • Neuroanatomy
  • Neuroscience Imaging
  • Electrophysiology

Background

  • The study focuses on addressing the challenge of bridging macroscopic and microscopic scales in neuroanatomical research.
  • It explores the reliability and accuracy of 3D scanning technology in mapping brain structures.
  • This method allows for the detailed investigation of known MRI contrast patterns related to disease.
  • Existing protocols are expanded to include both living subjects and post-mortem samples.

Purpose of Study

  • To develop a 3D protocol that embeds micro-scale information into macro-scale anatomical images.
  • To facilitate the identification of pathologies associated with distinct brain structures.
  • To improve the methodological framework for neuroanatomical research.

Methods Used

  • The main platform involves 3D scanning technology integrated with MRI imaging.
  • The key biological model includes post-mortem mouse brains, employing MRI and immunohistochemistry.
  • Critical steps include careful handling of the brain to avoid contamination and accurate scanning protocols.
  • Involves specific temperature and solution conditions during sample preparation.
  • 3D Slicer software is utilized for image processing and merging surface data.

Main Results

  • The protocol achieves high precision in correlating anatomical and electrophysiological data.
  • It validates methods for identifying brain regions implicated in neurological disorders.
  • Significant improvements in spatial resolution are noted when merging macro and micro imaging techniques.
  • Insights into neural connectivity and functional regions are enhanced through this methodology.

Conclusions

  • This study demonstrates the feasibility of utilizing advanced 3D scanning technology in neuroanatomical research.
  • The integration of different spatial scales offers new insights into neural mechanisms and disease models.
  • Overall, the method improves the understanding of the brain’s structure-function relationship.

Frequently Asked Questions

What are the advantages of using 3D scanning technology?
3D scanning technology enhances precision in correlating anatomical structures with neural activities, allowing researchers to pinpoint disease-related changes more effectively.
How is the biological model prepared for scanning?
The model, typically a post-mortem mouse brain, is carefully extracted and treated to maintain its anatomical integrity before undergoing 3D scanning.
What types of data can be obtained using this protocol?
The protocol yields detailed imaging data and can facilitate the evaluation of neural connectivity and the identification of disease markers via enhanced resolution.
Can this method be adapted for human studies?
Yes, the 3D neuro protocol can be applied to human MRIs, bridging the gap between preclinical and clinical research.
What are the key limitations of this protocol?
Key limitations include the sensitivity of 3D scan systems to environmental conditions and the need for rapid processing to maintain sample quality.

This article introduces an experimental protocol using 3D scanning technology bridging two spatial scales: the macroscopic spatial scale of whole-brain anatomy imaged by MRI at >100 μm and the microscopic spatial scale of neuronal distributions using immunohistochemistry staining and a multielectrode array system and other methods (~10 μm).

This protocol is the first to introduce 3D scanning technology in the anatomical, specifically neuroanatomical research field, and has achieved highly accurate overlapping performance. The 3D neuro embedding overlap, or 3D neuro protocol, embeds micro-scale sterile sockets into macro-scale brain images, and bridges these different spatial scales seamlessly. We also have to apply the 3D neuro protocol to human MRIs and post-mortem brain.

The overlapping enables us to identify known MRI contrast patterns relating to disease. 3D scan systems are sensitive to water surrounding the extracted bio organism, so it is critical to wipe the water very carefully. Furthermore, the procedure must be performed as quickly as possible.

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