Combined Near-infrared Fluorescent Imaging and Micro-computed Tomography for Directly Visualizing Cerebral Thromboemboli

Summary

This protocol describes the application of combined near-infrared fluorescent (NIRF) imaging and micro-computed tomography (microCT) for visualizing cerebral thromboemboli. This technique allows the quantification of thrombus burden and evolution. The NIRF imaging technique visualizes fluorescently labeled thrombus in excised brain, while the microCT technique visualizes thrombus inside living animals using gold-nanoparticles.

Abstract

Direct thrombus imaging visualizes the root cause of thromboembolic infarction. Being able to image thrombus directly allows far better investigation of stroke than relying on indirect measurements, and will be a potent and robust vascular research tool. We use an optical imaging approach that labels thrombi with a molecular imaging thrombus marker — a Cy5.5 near-infrared fluorescent (NIRF) probe that is covalently linked to the fibrin strands of the thrombus by the fibrin-crosslinking enzymatic action of activated coagulation factor XIIIa during the process of clot maturation. A micro-computed tomography (microCT)-based approach uses thrombus-seeking gold nanoparticles (AuNPs) functionalized to target the major component of the clot: fibrin. This paper describes a detailed protocol for the combined in vivo microCT and ex vivo NIRF imaging of thromboemboli in a mouse model of embolic stroke. We show that in vivo microCT and fibrin-targeted glycol-chitosan AuNPs (fib-GC-AuNPs) can be used for visualizing both in situ thrombi and cerebral embolic thrombi. We also describe the use of in vivo microCT-based direct thrombus imaging to serially monitor the therapeutic effects of tissue plasminogen activator-mediated thrombolysis. After the last imaging session, we demonstrate by ex vivo NIRF imaging the extent and the distribution of residual thromboemboli in the brain. Finally, we describe quantitative image analyses of microCT and NIRF imaging data. The combined technique of direct thrombus imaging allows two independent methods of thrombus visualization to be compared: the area of thrombus-related fluorescent signal on ex vivo NIRF imaging vs. the volume of hyperdense microCT thrombi in vivo.

Introduction

One in 6 people will have a stroke at some point in their lifetime. Ischemic stroke is by far the most common stroke type, and accounts for about 80 percent of all stroke cases. Because thromboemboli cause the majority of these ischemic strokes, there is an increasing interest in direct thrombus imaging.

It was estimated that about 2 million brain cells die during every minute of middle cerebral artery occlusion¹, leading to the slogan "Time is Brain". Computed tomography (CT) studies can be done rapidly, and are widely available; for this reason, CT remains the imaging of choice for the initial diagnosis and treatment of hyperacute ischemic stroke. CT is particularly valuable for informing the critical early decisions: administering tissue plasminogen activator (tPA) for thrombolysis and/or triaging to endovascular clot-retrieval². Current CT-based thrombus imaging, however, cannot serially track cerebral thromboemboli in vivo, because it uses indirect methods to demonstrate thrombi: after opacification of the blood pool by iodinated contrast, the thrombi are demonstrated as filling defects in the vessels. There are dose limits and risks associated with the repeated administration of iodinated contrast, which preclude repeated imaging of thrombi in this manner.

Thus, there is a critical need for a direct imaging methodology for cerebral thrombi in stroke patients, to allow faster and better treatment decisions to be made. We propose to accomplish this by enhancing the value of CT, the currently used frontline imaging modality for stroke, with the use of a thrombus-seeking nanoparticular molecular imaging agent.

We have demonstrated the use of this agent using micro-computed tomography (microCT), a high-resolution ex vivo or in vivo (small animal) imaging version of CT that allows rapid data acquisition^3,4. Even with the relatively poor soft tissue contrast available for small animal microCT (much worse than available from human sized scanners), the imaging agent was able to seek and mark thrombi by making them hyperdense on CT, a 'dense vessel sign' enhanced by molecular imaging.

Complementing the CT technique, our group has previously developed an optical direct thrombus imaging technique using Cy5.5 near-infrared fluorescent (NIRF) probe to visualize cerebral thrombus burden⁵. This is an ex vivo technique on post mortem brains, but is highly sensitive, and serves to confirm in vivo data in the research setting.

Having both CT and NIRF based thrombus-seeking imaging techniques allows us to compare and contrast these techniques to achieve highly informative data on the role of thrombus and thrombus imaging in the process of ischemic stroke development.

Here, we describe a detailed protocol of a combined technique of in vivo microCT and ex vivo NIRF imaging to directly visualize thromboemboli in a mouse model of embolic stroke. These simple and robust methods are useful to advance our understanding of thrombotic diseases by enabling the accurate in vivo assessment of thrombus burden / distribution and characterization of dynamic thrombus evolution in a prompt and quantitative manner in vivo during therapy, followed by ex vivo data that serves as a control and reference standard for the confirmation of in vivo imaging findings.

Protocol

All animal procedures demonstrated in this protocol have been reviewed and approved by the Dongguk University Ilsan Hospital Animal Care and Use Committee and conducted in accordance with the principles and procedures outlined in the NIH Guide for the Care and Use of Animals.

1. Preparation of Exogenously Formed Clot Labeled with Fluorescence Marker (Figure 1)

1. Anesthetize a mouse in an induction chamber using 3% isoflurane mixed with 30% oxygen (1.5 L/min 100% oxygen). Ensure adequate depth of anesthesia by observing muscle tone and confirming the absence of the toe pinch reflex.
2. Place the animal on a sterile drape in prone position, and keep it under anesthesia using an inhalation mask and 2% isoflurane mixed with 30% oxygen. Perform the following procedures using aseptic techniques and sterile gowns / masks / gloves / instruments. Maintain sterile conditions by cleaning and sanitizing the experimental area with 70% alcohol before and after the procedures.
3. Collect about 300 ~ 1,000 µl arterial blood after cardiac puncture⁶. Mix 70 µl whole blood with 30 µl C15 probe⁵ (20 µmol/L concentration), a Cy5.5 fluorescent probe sensitive to the fibrin-crosslinking activity of activated factor XIII (FXIIIa) coagulation enzyme, to fluorescently mark the clot (Figure 1A). Inject the mixed blood using a 3 ml syringe (23 gauge needle) into a 20 cm long polyethylene tube (PE-50, I.D. 0.58 mm). PE tubing must be sterilized (or certified sterile by manufacturer) and the clots must be prepared aseptically in a tissue culture hood.
4. Verify the animal's death by observing the lack of respiration and cardiac pulse.
5. Leave the blood-loaded tube at room temperature for 2 hr, then at 4 °C for 22 hr, and perform the following procedures, as previously reported⁷.
6. Cut the thrombus-containing tube into 1.5 cm-long pieces. Using a 3 ml syringe filled with phosphate-buffered saline (PBS), expel thrombus onto a PBS-containing 6-well plate by gently injecting PBS into each piece of tube. Wash the thrombi three times with PBS (Figure 1B).
7. Load the distal end portion of a 15 cm-long PE-10 tube (I.D. 0.28 mm) with a 1.5 cm-long thrombus by carefully drawing the washed thrombus, while avoiding air bubbles, using a saline-filled 1 ml syringe with a 30 gauge needle that is inserted into the proximal end of the tube.
8. Connect the thrombus-loaded PE-10 tube with a 3 cm long PE-50 tube (I.D. 0.58 mm) modified to have a tapered end (I.D. 200 µm), which will be placed on the middle cerebral artery (MCA) – anterior cerebral artery (ACA) bifurcation area of the internal carotid artery (ICA) in a mouse model of embolic stroke (Figure 1C).

2. Modeling a Mouse Model of Thromboembolic Stroke (Figure 2)

1. Anesthetize a different mouse to be stroked as previously reported⁷ in an induction chamber using 3% isoflurane mixed with 30% oxygen (1.5 L/min). Inject meloxicam (5 mg/kg) subcutaneously to relieve post-surgical pain. Ensure adequate depth of anesthesia by observing muscle tone and confirming the absence of the toe pinch reflex.
2. Apply a small amount of veterinary ointment to each eye to prevent dryness during anesthesia. Perform the following surgical procedures using aseptic techniques and sterile gowns / masks / gloves / instruments. Maintain sterile conditions by cleaning and sanitizing the surgical area with 70% alcohol before, during, and after the surgery.
3. Move the mouse to an operating table. Place the animal on a sterile drape in prone position, and keep it under anesthesia using an inhalation mask and 2% isoflurane. Then, clamp the body temperature at 36.5 °C using a homeothermic blanket with feedback from a rectal thermometer.
4. After surgical prep with betadine and 70% alcohol, make a 1 cm vertical incision by using a scalpel on the scalp between the left ear and eye. Glue the distal end of the optical fiber of a laser Doppler flowmeter onto the exposed left temporal bone surface (1 mm left and 4 mm below from the bregma). Then, start Doppler flow monitoring (Figure 2A).
5. Lay down the animal. Straighten the neck by pulling on the upper front tooth with a string attached to a pin and shave the neck area. Then, make a 3 cm vertical midline incision, spread it open, and expose the left carotid bulb area by dissecting peri-vascular soft tissues. Be careful not to injure the vagus nerve.
6. Ligate the left proximal common carotid artery (CCA) using a sterile 6-0 black silk suture, and ligate the left ICA and the left pterygopalatine artery (PPA) using sterile 7-0 black silk sutures.
7. Cauterize the left superior thyroid artery, which is a branch of the left external carotid artery using a monopolar electrical cautery, and ligate the left proximal external carotid artery (ECA) loosely and the more distal site tightly using sterile 7-0 black silk sutures.
8. Using a micro-scissor, make a small hole (about 0.2 ~ 0.25 µm diameter) between the ligated sites of the ECA.
9. Insert the thrombus-containing catheter into the hole in the ECA while loosening the proximal ECA ligation. Tighten the proximal ECA ligation again after advancing the catheter into the CCA in order to cinch the catheter in place.
10. Cauterize to cut the ECA distal part, which is distal to the distal ligation site, and rotate the free proximal ECA clockwise to align it to the direction of the ICA while withdrawing the catheter from the CCA. Then, advance the catheter about 9 mm into the MCA − ACA bifurcation area of the distal ICA immediately after loosening the ICA ligation. Then, tighten the ICA ligation.
11. Place the thrombus into the bifurcation area by gently pressing the syringe 1 ml to inject the thrombus. Check the decrease of Doppler cerebral blood flow (CBF), which should be lowered by 30% or lower compared to baseline, if the thrombus successfully occluded the vessel (Figure 2B).
12. Remove the catheter, and ligate the ECA proximal site immediately and tightly. In addition, unligate the CCA and the PPA.
13. Close the incision site using 6-0 silk sutures. Stop anesthesia after continuing the Doppler monitoring over a required time span (here, for 30 min after thrombus injection). Return the mouse in an empty cage, and keep it warm with a heating lamp. Do not leave the mouse unattended until it has gained sufficient consciousness to maintain sternal recumbency.

3. In Vivo MicroCT Imaging of Cerebral Thrombus (Figure 3)

1. Re-anesthetize the mouse with 2% isoflurane as described in the step 2.1 at a pre-specified time-point (here, 1 hr) following the onset of embolic stroke due to the placement of thrombus in the cerebral artery. Ensure adequate depth of anesthesia by confirming the absence of the toe pinch reflex. Apply a small amount of veterinary ointment to each eye to prevent dryness during anesthesia.
2. Resuspend fibrin-targeted gold nanoparticles (fib-GC-AuNP⁴) at a concentration of 10 mg Au/ml in 10 mM PBS, and sonicate the thrombus imaging agent for 30 min to ensure dissolution and dispersion of the nanoparticles. Inject 300 µl fib-GC-AuNP (10 mg/ml) into the penile vein.
3. Place the animal on the bed of a microCT machine, and straighten the neck by pulling the upper front tooth with a string attached to a pin to reduce motion artifacts.
4. At 5 min after the injection of fib-GC-AuNP, begin to obtain microCT images of the brain. For the experiments described here, use the following imaging parameters: 65 kVp, 60 µA, 26.7 x 26.7 x 27.9 mm³ field of view, 0.053 x 0.053 x 0.054 mm³ voxel size, 100 milliseconds per frame, 1 averaging, 360 views, 512 x 512 reconstruction matrix, 600 slices, 64 sec scan time.
5. Return the mouse in an empty cage, and keep it warm with a heating lamp. Do not leave the mouse unattended until it has gained sufficient consciousness to maintain sternal recumbency.
6. Transform the raw image data into Digital Imaging and Communications in Medicine (DICOM) format using the 'Start' command of the 'Reconstruction' panel in a software package installed on the microCT scanner.
7. For quantitative analyses of the images (in step 6), transform the DICOM data into TIFF format by using a commercially available software package according to manufacturer's instructions.
8. For qualitative analyses as well as quantitative analyses in a simpler and more rapid way, use the software package and the original 0.054 mm thick images in DICOM format for generating a new set of axial and coronal images rendered to have 1 or 2 mm (here, 2 mm) thickness, as follows.
   1. Select the DICOM folder on the 'Data Source' tree, click the right mouse button, and import the folder to 'MasterDB' or 'PrivateDB'.
   2. Click the 'MasterDB' or 'PrivateDB' in the 'Data Source' tree, and select the imported folder. After clicking the '3D' tab on the leftmost panel, when the 'Loading Options' window pops up, press 'OK' to import a sequence of images in the folder as a stack.
   3. Change the image representation to maximum intensity projection (MIP) format by clicking the word 'MRP' in the axial and coronal image windows and choosing 'MIP' on the pop-up menu. Then, change the image thickness to 2 mm after clicking 'TH : 0 [mm]' in the same windows.
   4. Using the 2 mm width 3D navigator bar that allows for exploring an image stack and slicing it at an appropriate angle and location, prepare a 2 mm thick axial section image with full coverage of the circle of Willis (COW), which harbors thrombi. Click the capture button (camera icon) on the 'Output' panel. Save the image in TIFF format.
9. Then, prepare five 2 mm thick coronal section images that cover contiguously from the frontal lobe to the cerebellum.
   1. First, prepare the second slice by carefully aligning the navigator bar on the axial image so that the coronal image can best visualize the MCA − ACA thrombi.
   2. Next, prepare the other four slices in a contiguous way. Click the capture button (camera icon) on the 'Output' panel. Save the images in TIFF format.

4. Thrombolysis and In Vivo MicroCT Imaging of Cerebral Thrombus (Figure 3)

1. Prepare a 100 cm long PE-10 tube with a 30 gauge needle on one end and a 1 ml syringe on the other end. Fill the tube with either saline (600 µl) or tPA (here, 24 mg/kg, 600 µl) while avoiding air bubbles.
2. Re-anesthetize the mouse as described in the step 2.1. Insert the needle tip within the penile vein of the animal. Place the animal carefully onto the bed of the microCT machine. Then, immobilize and stabilize the intravenously injected part of the catheter system by taping it to the bed.
3. Perform a follow-up imaging session as pre-treatment baseline. Then, inject either 60 µl normal saline or tPA by depressing the syringe plunger into the catheter system. After the bolus injection, begin to infuse the remaining solution (540 µl) over a period of time (here, 30 min).
4. Obtain microCT images using the same parameters as in the step 3.4 at pre-specified time-points: here, at 3 and 24 hr after the bolus injection. To perform the following ex vivo NIRF thrombus imaging of the brain, euthanize the animal under anesthesia by cervical dislocation.

5. Ex Vivo NIRF Thrombus Imaging and Triphenyl Tetrazolium Chloride (TTC) Staining of the Brain Tissue (Figure 4)

1. After decapitation, remove the scalp and cut through the skull with scissors from the foramen magnum up toward the sagittal suture. Remove the cranial vault by carefully elevating the edges of the incised skull using scissors while avoiding injury to the underlying brain, thus laying bare the hemispheres.
2. Cut out the optic nerves in the brain base as close as possible to the brain surface, because they could overlap with the circle of Willis arteries that should be visualized on NIRF imaging. Then, in order to clearly visualize the Y-shape 'MCA / ACA / distal ICA' for the NIRF thrombus imaging, cut out the distal ICAs as far as possible to the brain surface after gently compressing the cerebellar base to expose the cutting points (Figure 4A).
3. Perform NIRF imaging (excitation / emission, 675 / 690 nm; 1 sec exposure) of the removed brain tissue with its base pointing up (Figure 4B, C), which visualizes the fluorescently labeled thromboemboli in the arteries of the COW (Figure 4D). Then, perform additional imaging with the vertex of the brain pointing up, which visualizes cortical thromboemboli. Avoid drying of the brain by putting a few drops of saline on the tissue.
4. Using a brain matrix device according to the manufacturer's instructions, quickly prepare 2 mm thick brain slices coronally: 6 pieces of 2 mm thick slices (2.3, 0.3, -1.7, -3.7, -5.7 mm from the bregma). Avoid drying of the brain slices by using saline drops, and perform NIRF imaging of both the front and back surface of the sections.
5. Put the brain slices in 2% triphenyl tetrazolium chloride (TTC) solution for 20 min, while avoiding exposure to light. Then, move the slices into 4% formaldehyde solution at 4 °C, while avoiding exposure to light.

6. Quantification of Thrombus Area Using MicroCT Images and ImageJ (1.49d) Software (Figure 5)

1. Open Images (Figure 5A).
   1. Open image sequence files to create a stack file by choosing 'File > Import > Image Sequence' or 'File > Open'. Convert the images to 8-bit grayscale by using 'Image > Type > 8-bit'.
2. Convert the Unit from Inch to Millimeter (Figure 5A).
   1. When one pixel of CT image files corresponds to 0.053 mm, use 'Analyze > Set Scale' to enter '1', '0.053', and 'mm' for 'Distance in pixels', 'Known distance', and 'Unit of length', respectively.
   2. When (only) a scale bar is available, using the 'Straight Line' tool draw a line with its length equal to that of the scale bar. Then, use 'Analyze > Set Scale' to enter the length of the scale bar in millimeter.
3. Background Subtraction (Figure 5B)
   1. By using 'Edit> Selection> Specify' place a circular or rectangular region of interest (ROI) on an area of the brain parenchyma without thrombus or bone-related hyperdense regions. Because the specified ROI applies to every slice of the stack, check to be sure if it is not overlapped with hyperdense regions in each slice.
   2. Choose 'Plugin > ROI > BG subtraction from ROI' and enter 2.0 for the 'Number of stdev from mean'.
4. Segmentation of Thromboemboli-related Hyperdense Lesions (Figure 5C)
   1. Choose 'Image > Adjust > Threshold', and enter the values of 'Lower Threshold Level' and 'Upper Threshold Level' as 22 and 255, respectively. Select 'Over/Under' to display pixels below the lower threshold value in blue, thresholded pixels in grayscale, and pixels above the upper threshold value in green.
   2. Use the 'Freehand Selection Tool' to draw ROIs that surround thromboemboli-related hyperdense lesions without including bony areas. During the drawing, keep pressing either [shift] or [alt] to add or remove a region, respectively.
      Note: If hyperdense thromboembolic lesions are distant from bony structures, instead of the 'Freehand Selection Tool', 'Wand Tool' can safely be used without changing its 'Tolerance' level.
5. Quantification of the Segmented Lesions (Figure 5D)
   1. Use 'Analyze > Set Measurements' to choose 'Area', 'Mean Gray Value', and 'Integrated Density (Area X Mean)'. Check the following options: 'Limit to Threshold' and 'Display Label'. Use 'Analyze > Measure' to get the quantified data. Then, save the results as a ".xls" file.
   2. Save the stack file in TIFF format. In addition, use 'Analyze > Tools > ROI manager' to save the ROIs.

Results

Baseline microCT images, obtained in vivo after administering fib-GC-AuNP (10 mg/ml, 300 µl) at 1 hr after embolic stroke, clearly visualized cerebral thrombus in the MCA – ACA bifurcation area of the distal internal carotid artery (Figure 6). Follow-up microCT imaging showed no change in the COW thrombus with saline treatment. However, treatment with tPA showed a gradual dissolution of the COW thrombus (blue arrowheads in Figure 6). T...

Discussion

We demonstrated the use of two complementary molecular imaging techniques for direct thrombus imaging in experimental models of embolic stroke: a fibrin targeted gold nanoparticle (fib-GC-AuNP) for in vivo microCT-based imaging, and a FXIIIa targeted optical imaging probe for ex vivo fluorescent imaging.

After intravenous administration of fib-GC-AuNPs, thrombi became visible to CT as dense structures, caused by the particles becoming entrapped in the thrombi by the action of...

Materials

List of materials used in this article

Name	Company	Catalog Number	Comments
Machines
microCT	NanoFocusRay, JeonJu, Korea	NFR Polaris-G90
NIRF imaging system	Roper-scientific,Tucson, AZ	coolsnap-Ez
Laser Doppler flowmeter	Perimed, Stockholm, Sweden	PeriFlux System 5000
Surgical microscope	Leica Microsystems, Seoul, Korea	EZ4HD
Inhalation anesthesia machine	PerkinElmer, Massachusetts, USA	XGI-8
Software
NFR control	NanoFocusRay, JeonJu, Korea	NFR Polaris-G90	microCT control software
Lucion	Infinitt, Seoul, Korea	Lucion	3D render imaging software
Lab chart 7	ADInstruments, Colorado, USA	Lab chart 7	rCBF
ImageJ software	Wanye Rasband, NIH, USA	1.49d	imaging analysis
Devices/Instruments
Infusion pump	Harvard, Massachusetts, USA	pump 22(55-2226)
Homeothermic blanket	Panlab, Barcelona, Spain	HB101
Pocket cautery	Daejong, Seoul, Korea	DJE-39
Brain matrice	Ted pella, CA, USA	15003	coronal section
PE-50 tubing	Natsume, Tokyo, Japan	SP-45(PE-50)	I.D. 0.58 mm O.D. 0.96 mm
PE-10 tubing	Natsume, Tokyo, Japan	SP-10(PE-10)	I.D. 0.28 mm O.D. 0.61 mm
30 gauge needle	sungshim-medical, Seoul, Korea
Syringe	CPL-medical, Ansan, Korea		1 & 3 cc
Gauze	Panamedic, Cheonan, Korea
Tape	Scotch, Seoul, Korea	3M-810
Micro forceps	Fine Science Tools, Vancouver, Canada	11253-27	Dumont #L5
Micro scissor	Fine Science Tools, Vancouver, Canada	15000-03	Vannas spring
Scissor	Fine Science Tools, Vancouver, Canada	14084-08	8.5 cm
Black silk suture	Ailee, Busan, Korea	SK6071, SK728	6-0 and 7-0
Reagents
meloxicam	Yuhan, Seoul, Korea
vet ointment	Novartis, Basel, Swiss
10% Povidone-iodine (betadine)	Firson, Cheon-an, Korea
FeCl3	Sigma, Missouri, United States	157740-5G
TTC	Amresco, Ohio, USA	0765-100g
Isoflurane	Hana-Pham, Gyeonggi, Korea	Ifran	100 ml
PBS	Welgene, Daegu, Korea	LB001-02	500 ml
Gold nanoparticles			Synthesis
C15 optical agent			Synthesis
Tissue plasminogen activator	Boehringer Ingelheim, Biberach, Germany	rtPA(actilyse)	20 mg
Normal saline	Daihan Pham, Seoul, Korea	48N3AF3	20 ml