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Chapters
- 00:05Title
- 01:28Pooled PCR Library Preparation and Sequencing
- 04:46Sequencing Reads Alignment and Analysis
- 07:35Rare Variant Detection using SPLINTER
- 11:11SPLINTER Results: Detection of Rare Genomic Variants from Pooled Sequencing
- 13:24Conclusion
Pooled DNA sequencing is a fast and cost-effective strategy to detect rare variants associated with complex phenotypes in large cohorts. Here we describe the computational analysis of pooled, next-generation sequencing of 32 cancer-related genes using the SPLINTER software package. This method is scalable, and applicable to any phenotype of interest.
Tags
Rare Genomic VariantsPooled SequencingSPLINTERDNA Sequencing TechnologyGenetic VariationArray-based GenotypingCommon Disease/rare Variant HypothesisMissing HeritabilityPersonal Profile Of Rare Or Private DNA VariantsComplex PhenotypesAffected IndividualsUnaffected CohortComputational AnalysisPooled Sequencing ApproachSoftware Package
