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Brug RNA-sekventering til Detect Novel Splice Varianter Relateret til Drug Resistance i<em> In vitro</em> Kræft Modeller
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1Department of Pediatric Oncology/Hematology,VU University Medical Center, 2Department of Hematology,VU University Medical Center, 3Department of Medical Oncology,VU University Medical Center, 4Department of Clinical Genetics,VU University Medical Center, 5Division of General and Transplant Surgery, Azienda Ospedaliera Universitaria Pisana,Universita’ di Pisa, 6Amsterdam Immunology and Rheumatology Center,VU University Medical Center, 7Princess Máxima Center for Pediatric Oncology, 8Cancer Pharmacology Lab, AIRC Start-Up Unit,University of Pisa, 9Institute of Nanoscience and Nanotechnology,CNR-Nano
Chapters
- 00:05Title
- 01:09Characterization of Drug Resistance Profiles through Cytotoxicity Assays
- 05:01RNA Isolation and Library Preparation for RNA-sequencing
- 05:55Validation of the Results by RT-PCR and qRT-PCR Assays
- 07:21Results: Detection of Differential Splicing Events in Chemotherapy-resistant Cell Lines Compared to Parental Wild-type by Using RNA-sequencing
- 09:07Conclusion
Her beskriver vi en protokol til formål at undersøge effekten af afvigende splejsning på resistens i solide tumorer og blodkræftsygdomme. Til dette mål, vi analyserede transkriptom profiler af forældrenes og resistente in vitro modeller gennem RNA-seq og etablerede et QRT-PCR-metode til at validere kandidatgener.
