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JoVE Journal
Biochemistry
Electrochemical Detection of Deuterium Kinetic Isotope Effect on Extracellular Electron Transport...
Electrochemical Detection of Deuterium Kinetic Isotope Effect on Extracellular Electron Transport...
JoVE Journal
Biochemistry
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JoVE Journal Biochemistry
Electrochemical Detection of Deuterium Kinetic Isotope Effect on Extracellular Electron Transport in Shewanella oneidensis MR-1

Electrochemical Detection of Deuterium Kinetic Isotope Effect on Extracellular Electron Transport in Shewanella oneidensis MR-1

Full Text
10,780 Views
09:00 min
April 16, 2018

DOI: 10.3791/57584-v

Yoshihide Tokunou1, Kazuhito Hashimoto2, Akihiro Okamoto2

1Department of Applied Chemistry,University of Tokyo, 2Global Research Center for Environment and Energy based on Nanomaterials Science,National Institute for Materials Science

Overview

This protocol outlines whole-cell electrochemical experiments to investigate proton transport's role in extracellular electron transport (EET) in Shewanella oneidensis MR-1. The study employs the deuterium kinetic isotope effect to assess the impact of proton transport on EET kinetics.

Key Study Components

Area of Science

  • Electrochemistry
  • Microbiology
  • Bioenergetics

Background

  • Shewanella oneidensis MR-1 is known for its ability to transfer electrons to electrodes.
  • Proton transport is crucial for the efficiency of extracellular electron transport.
  • The deuterium kinetic isotope effect is a valuable method for studying proton involvement in electron transport.
  • Using living bacteria provides insights into native proton management during EET.

Purpose of Study

  • To observe the contribution of proton transport to the rate of EET.
  • To utilize the deuterium kinetic isotope effect for examining proton transport's role.
  • To improve understanding of the mechanisms underlying bacterial electron transfer.

Methods Used

  • Whole-cell electrochemical experiments.
  • Detection of the deuterium kinetic isotope effect.
  • Use of living Shewanella oneidensis MR-1 cells.
  • Growth of bacterial cultures in LB medium.

Main Results

  • Proton transport significantly affects the kinetics of EET.
  • The deuterium kinetic isotope effect provides clear insights into proton involvement.
  • Noise from other cellular processes was effectively minimized.
  • The method reflects native proton management in EET.

Conclusions

  • Proton transport is a critical factor in the efficiency of EET in bacteria.
  • The protocol offers a reliable approach to study these processes in living cells.
  • Findings contribute to a deeper understanding of microbial electron transfer mechanisms.

Frequently Asked Questions

What is the main focus of this study?
The study focuses on the role of proton transport in extracellular electron transport in Shewanella oneidensis MR-1.
How does the deuterium kinetic isotope effect contribute to the research?
It allows for the examination of proton transport's contribution to electron transport kinetics.
Why use living bacteria instead of purified enzymes?
Using living bacteria reflects the native proton management during electron transport processes.
What challenges were faced during the experiments?
The main challenge was to minimize noise from other cellular processes that could interfere with results.
What are the implications of this research?
The findings enhance the understanding of microbial electron transfer mechanisms and their efficiency.

Here we present a protocol of whole-cell electrochemical experiments to study the contribution of proton transport to the rate of extracellular electron transport via the outer-membrane cytochromes complex in Shewanella oneidensis MR-1.

The overall goal of this protocol is to observe the contribution of proton transport to the rate of bacterial extracellular electron transport by the detection of the deuterium kinetic isotope effect. Our method reveals the impact of proton transport on the kinetics of extracellular electron transport or EET from bacteria to an electrode via outer membrane c-type cytochromes. Our assay reflects the native proton management in EET because we used living bacteria rather than purified enzyme.

However, our challenge was to remove the noises from other cellular processes. The deuterium kinetic isotope effect termed as KIE is one of the best technique to examine the contribution of proton transport on the associated electron transport process. To grow Shewanella MR-1 cells, transfer one colony of the cells grown on an agar plate into 15 milliliters of LB medium.

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